Wall clock time and date at job start Tue Mar 31 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33821 * 122.44683 * 2 1 4 4 S 1.70618 * 110.95811 * 180.02562 * 3 2 1 5 5 C 1.75839 * 91.56118 * 359.81082 * 4 3 2 6 6 C 1.46534 * 125.45754 * 180.20620 * 5 4 3 7 7 O 1.21705 * 120.00008 * 180.14257 * 6 5 4 8 8 N 1.34780 * 119.99826 * 0.14480 * 6 5 4 9 9 C 1.39368 * 119.99667 * 175.12587 * 8 6 5 10 10 C 1.38665 * 119.65068 * 184.90268 * 9 8 6 11 11 C 1.40816 * 118.67393 * 179.78274 * 10 9 8 12 12 C 1.41543 * 120.99960 * 180.26539 * 11 10 9 13 13 H 1.07996 * 120.00303 * 203.92065 * 12 11 10 14 14 C 1.40029 * 119.99819 * 23.91911 * 12 11 10 15 15 N 1.30744 * 120.00483 * 16.68279 * 14 12 11 16 16 Si 1.86802 * 119.99956 * 196.68164 * 14 12 11 17 17 H 1.48496 * 109.47080 * 59.99946 * 16 14 12 18 18 H 1.48495 * 109.47216 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46944 * 300.00251 * 16 14 12 20 20 C 1.41160 * 118.00271 * 0.48131 * 11 10 9 21 21 C 1.36590 * 119.13486 * 359.75591 * 20 11 10 22 22 N 1.32068 * 121.26276 * 0.02562 * 21 20 11 23 23 C 1.36676 * 109.07892 * 0.32930 * 5 4 3 24 24 H 1.09004 * 109.47110 * 269.97282 * 1 2 3 25 25 H 1.09001 * 109.47017 * 29.97415 * 1 2 3 26 26 H 1.08997 * 109.47249 * 149.97727 * 1 2 3 27 27 H 1.08001 * 124.52234 * 0.04853 * 3 2 1 28 28 H 0.96996 * 120.00714 * 355.12978 * 8 6 5 29 29 H 1.08003 * 120.66451 * 0.02562 * 10 9 8 30 30 H 0.96996 * 120.00289 * 180.02562 * 15 14 12 31 31 H 1.08009 * 120.43312 * 179.77764 * 20 11 10 32 32 H 1.08005 * 119.37215 * 180.02562 * 21 20 11 33 33 H 1.08004 * 123.35132 * 179.86975 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8970 0.7895 -0.0007 5 6 3.5938 -0.9426 0.0048 6 6 4.6230 -1.9857 0.0111 7 8 4.3001 -3.1591 0.0120 8 7 5.9272 -1.6455 0.0161 9 6 6.9044 -2.6332 0.1247 10 6 8.2383 -2.2696 0.2319 11 6 9.2081 -3.2842 0.3452 12 6 10.5829 -2.9687 0.4629 13 1 11.3299 -3.6906 0.1678 14 6 10.9744 -1.7203 0.9620 15 7 10.1179 -0.9796 1.6156 16 14 12.7206 -1.1131 0.6940 17 1 12.9938 -1.0189 -0.7625 18 1 12.8799 0.2260 1.3157 19 1 13.6763 -2.0642 1.3164 20 6 8.7686 -4.6256 0.3331 21 6 7.4328 -4.8867 0.2184 22 7 6.5496 -3.9098 0.1185 23 6 2.2445 -1.1600 -0.0006 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.8025 2.1232 0.0008 28 1 6.1856 -0.7134 -0.0558 29 1 8.5272 -1.2290 0.2325 30 1 10.3891 -0.1147 1.9610 31 1 9.4792 -5.4349 0.4140 32 1 7.0922 -5.9116 0.2092 33 1 1.8018 -2.1451 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001534502124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:19 Heat of formation + Delta-G solvation = 30.654714 kcal Electronic energy + Delta-G solvation = -19144.366175 eV Core-core repulsion = 16068.656326 eV Total energy + Delta-G solvation = -3075.709850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.70521 -38.41309 -37.45599 -34.37066 -33.79517 -31.13619 -30.52567 -28.78699 -27.79596 -26.04407 -24.57051 -22.01861 -21.46276 -19.97138 -18.98900 -18.19823 -17.66570 -16.30411 -15.46808 -15.36455 -14.81993 -14.72178 -14.23893 -13.95466 -13.86390 -13.52281 -13.20763 -12.88109 -12.65203 -12.46617 -12.22517 -12.04469 -11.94929 -11.47058 -11.24193 -10.93520 -10.91506 -10.33558 -10.19704 -9.83239 -9.57357 -9.37617 -8.83702 -8.45692 -8.02844 -7.77098 -7.08874 -6.84804 -4.64113 0.55334 1.48153 1.88119 2.32239 2.72448 2.78952 2.99403 3.02150 3.22997 3.52708 3.73059 3.82657 4.64788 4.83299 4.87679 5.15148 5.22443 5.45070 5.47077 5.66118 5.74873 5.82309 6.01216 6.25711 6.35053 6.52332 6.60989 6.78976 6.92222 7.07400 7.35393 7.42094 7.71991 7.88029 8.15297 8.37402 8.65546 8.71071 8.79817 9.65758 10.03546 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.004029 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.352489 B = 6948.017330 C = 8045.631734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.116 4.116 3 C -0.244 4.244 4 S 0.196 5.804 5 C -0.246 4.246 6 C 0.572 3.428 7 O -0.467 6.467 8 N -0.652 5.652 9 C 0.339 3.661 10 C -0.244 4.244 11 C 0.144 3.856 12 C -0.454 4.454 13 H 0.083 0.917 14 C 0.078 3.922 15 N -0.786 5.786 16 Si 0.912 3.088 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.282 4.282 21 C 0.121 3.879 22 N -0.557 5.557 23 C -0.064 4.064 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.166 0.834 28 H 0.405 0.595 29 H 0.128 0.872 30 H 0.283 0.717 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.144 8.194 -2.227 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.381 4.381 4 S 0.465 5.535 5 C -0.367 4.367 6 C 0.356 3.644 7 O -0.339 6.339 8 N -0.297 5.297 9 C 0.114 3.886 10 C -0.269 4.269 11 C 0.136 3.864 12 C -0.485 4.485 13 H 0.101 0.899 14 C -0.141 4.141 15 N -0.411 5.411 16 Si 0.736 3.264 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.306 4.306 21 C -0.033 4.033 22 N -0.276 5.276 23 C -0.096 4.096 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.183 0.817 28 H 0.240 0.760 29 H 0.146 0.854 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.029 8.287 -2.159 13.964 hybrid contribution 0.506 0.358 0.106 0.629 sum -10.523 8.645 -2.053 13.773 Atomic orbital electron populations 1.20496 0.89556 1.02731 1.02327 1.18761 0.97801 0.91569 1.04825 1.25080 0.98649 1.03158 1.11259 1.83094 1.03840 0.98762 1.67823 1.24888 0.98277 0.97044 1.16498 1.17037 0.81547 0.87583 0.78226 1.90910 1.80579 1.17297 1.45076 1.43251 1.04788 1.09495 1.72200 1.18127 0.85890 0.87196 0.97386 1.21542 0.89718 1.01241 1.14446 1.17554 0.93271 0.90053 0.85528 1.19558 0.92069 0.99478 1.37435 0.89916 1.25971 0.99950 0.96049 0.92160 1.69769 1.36715 1.10746 1.23894 0.86296 0.81787 0.78351 0.79924 1.18674 1.20217 1.18854 1.21667 0.95974 0.97022 1.15938 1.21483 0.89489 0.96238 0.96091 1.67213 1.37914 0.98157 1.24339 1.20637 0.90975 0.99940 0.98086 0.91227 0.91656 0.91302 0.81678 0.76037 0.85414 0.90578 0.87930 0.85884 0.82938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.13 36.01 0.36 -0.39 16 2 C -0.12 -1.32 5.78 -106.46 -0.62 -1.93 16 3 C -0.24 -2.57 10.67 29.18 0.31 -2.26 16 4 S 0.20 2.38 22.16 -107.50 -2.38 -0.01 16 5 C -0.25 -3.91 6.45 -36.80 -0.24 -4.15 16 6 C 0.57 11.69 7.74 -12.92 -0.10 11.59 16 7 O -0.47 -11.24 15.09 5.18 0.08 -11.16 16 8 N -0.65 -13.57 5.38 -12.71 -0.07 -13.64 16 9 C 0.34 8.41 7.42 -154.75 -1.15 7.27 16 10 C -0.24 -6.24 8.63 -38.45 -0.33 -6.57 16 11 C 0.14 3.80 5.60 -106.55 -0.60 3.20 16 12 C -0.45 -11.60 9.12 -37.65 -0.34 -11.95 16 13 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 14 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 15 N -0.79 -19.23 10.92 55.55 0.61 -18.63 16 16 Si 0.91 17.72 29.59 -169.99 -5.03 12.69 16 17 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 18 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 C -0.28 -6.94 9.85 -39.07 -0.38 -7.33 16 21 C 0.12 2.92 11.10 -18.05 -0.20 2.72 16 22 N -0.56 -14.48 7.85 -12.77 -0.10 -14.58 16 23 C -0.06 -0.89 9.80 -40.43 -0.40 -1.29 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 26 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.40 7.14 7.82 -40.82 -0.32 6.82 16 29 H 0.13 3.23 6.21 -52.48 -0.33 2.90 16 30 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 31 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 32 H 0.12 2.60 8.06 -52.48 -0.42 2.18 16 33 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -30.94 306.65 -9.19 -40.13 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -3.15 Total: 9.87 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -3.77 Total: -9.30 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.44 Total: -46.84 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.38 Total: -0.01 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.94 -9.19 -40.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534502124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.787 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds