Wall clock time and date at job start Tue Mar 31 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33821 * 122.44683 * 2 1 4 4 S 1.70618 * 110.95811 * 180.02562 * 3 2 1 5 5 C 1.75839 * 91.56118 * 359.81082 * 4 3 2 6 6 C 1.46534 * 125.45754 * 180.20620 * 5 4 3 7 7 O 1.21705 * 120.00008 * 180.14257 * 6 5 4 8 8 N 1.34780 * 119.99826 * 0.14480 * 6 5 4 9 9 C 1.39368 * 119.99667 * 175.12587 * 8 6 5 10 10 C 1.38665 * 119.65068 * 184.90268 * 9 8 6 11 11 C 1.40816 * 118.67393 * 179.78274 * 10 9 8 12 12 C 1.41543 * 120.99960 * 180.26539 * 11 10 9 13 13 H 1.07996 * 120.00303 * 203.92065 * 12 11 10 14 14 C 1.40029 * 119.99819 * 23.91911 * 12 11 10 15 15 N 1.30744 * 120.00483 * 16.68279 * 14 12 11 16 16 Si 1.86802 * 119.99956 * 196.68164 * 14 12 11 17 17 H 1.48496 * 109.47080 * 59.99946 * 16 14 12 18 18 H 1.48495 * 109.47216 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46944 * 300.00251 * 16 14 12 20 20 C 1.41160 * 118.00271 * 0.48131 * 11 10 9 21 21 C 1.36590 * 119.13486 * 359.75591 * 20 11 10 22 22 N 1.32068 * 121.26276 * 0.02562 * 21 20 11 23 23 C 1.36676 * 109.07892 * 0.32930 * 5 4 3 24 24 H 1.09004 * 109.47110 * 269.97282 * 1 2 3 25 25 H 1.09001 * 109.47017 * 29.97415 * 1 2 3 26 26 H 1.08997 * 109.47249 * 149.97727 * 1 2 3 27 27 H 1.08001 * 124.52234 * 0.04853 * 3 2 1 28 28 H 0.96996 * 120.00714 * 355.12978 * 8 6 5 29 29 H 1.08003 * 120.66451 * 0.02562 * 10 9 8 30 30 H 0.96996 * 120.00289 * 180.02562 * 15 14 12 31 31 H 1.08009 * 120.43312 * 179.77764 * 20 11 10 32 32 H 1.08005 * 119.37215 * 180.02562 * 21 20 11 33 33 H 1.08004 * 123.35132 * 179.86975 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8970 0.7895 -0.0007 5 6 3.5938 -0.9426 0.0048 6 6 4.6230 -1.9857 0.0111 7 8 4.3001 -3.1591 0.0120 8 7 5.9272 -1.6455 0.0161 9 6 6.9044 -2.6332 0.1247 10 6 8.2383 -2.2696 0.2319 11 6 9.2081 -3.2842 0.3452 12 6 10.5829 -2.9687 0.4629 13 1 11.3299 -3.6906 0.1678 14 6 10.9744 -1.7203 0.9620 15 7 10.1179 -0.9796 1.6156 16 14 12.7206 -1.1131 0.6940 17 1 12.9938 -1.0189 -0.7625 18 1 12.8799 0.2260 1.3157 19 1 13.6763 -2.0642 1.3164 20 6 8.7686 -4.6256 0.3331 21 6 7.4328 -4.8867 0.2184 22 7 6.5496 -3.9098 0.1185 23 6 2.2445 -1.1600 -0.0006 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.8025 2.1232 0.0008 28 1 6.1856 -0.7134 -0.0558 29 1 8.5272 -1.2290 0.2325 30 1 10.3891 -0.1147 1.9610 31 1 9.4792 -5.4349 0.4140 32 1 7.0922 -5.9116 0.2092 33 1 1.8018 -2.1451 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001534502124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:19 Heat of formation + Delta-G solvation = 12.762539 kcal Electronic energy + Delta-G solvation = -19145.142038 eV Core-core repulsion = 16068.656326 eV Total energy + Delta-G solvation = -3076.485713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.36353 -39.86485 -38.83695 -36.18228 -35.59664 -32.57426 -32.11698 -30.44447 -28.66798 -27.95906 -25.88746 -23.89685 -23.05248 -21.55509 -20.06030 -19.55042 -19.40550 -17.83912 -17.10031 -16.91706 -16.36110 -16.10416 -16.08466 -15.66734 -14.87879 -14.85475 -14.55339 -14.36452 -14.19085 -14.06349 -13.22968 -13.18756 -12.93899 -12.89476 -12.77924 -12.65134 -12.10800 -11.95613 -11.88716 -11.61436 -11.26130 -11.17584 -9.99090 -9.89984 -9.67342 -9.39216 -8.94408 -8.67714 -6.58834 -0.54890 0.44456 0.76247 0.91935 0.97989 1.40122 1.41602 1.52896 1.60062 1.96838 2.18440 2.20430 2.79270 3.56349 3.72043 4.04372 4.15727 4.19620 4.38727 4.67399 4.69131 4.75279 4.85944 4.88867 4.93738 5.03627 5.06676 5.19875 5.38157 5.45421 5.48282 5.56224 5.87061 6.06768 6.37124 6.50699 6.76049 6.79894 7.11528 7.77266 8.24422 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.004029 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.352489 B = 6948.017330 C = 8045.631734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.129 4.129 3 C -0.218 4.218 4 S 0.227 5.773 5 C -0.296 4.296 6 C 0.571 3.429 7 O -0.516 6.516 8 N -0.648 5.648 9 C 0.333 3.667 10 C -0.261 4.261 11 C 0.116 3.884 12 C -0.482 4.482 13 H 0.087 0.913 14 C 0.040 3.960 15 N -0.810 5.810 16 Si 0.989 3.011 17 H -0.259 1.259 18 H -0.265 1.265 19 H -0.259 1.259 20 C -0.295 4.295 21 C 0.114 3.886 22 N -0.583 5.583 23 C -0.054 4.054 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.205 0.795 28 H 0.417 0.583 29 H 0.125 0.875 30 H 0.294 0.706 31 H 0.119 0.881 32 H 0.150 0.850 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.568 10.625 -2.264 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C -0.356 4.356 4 S 0.495 5.505 5 C -0.416 4.416 6 C 0.359 3.641 7 O -0.391 6.391 8 N -0.295 5.295 9 C 0.108 3.892 10 C -0.287 4.287 11 C 0.107 3.893 12 C -0.512 4.512 13 H 0.105 0.895 14 C -0.178 4.178 15 N -0.435 5.435 16 Si 0.809 3.191 17 H -0.183 1.183 18 H -0.189 1.189 19 H -0.184 1.184 20 C -0.319 4.319 21 C -0.039 4.039 22 N -0.304 5.304 23 C -0.088 4.088 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.222 0.778 28 H 0.254 0.746 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.137 0.863 32 H 0.168 0.832 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.470 10.748 -2.194 15.871 hybrid contribution 0.541 -0.314 0.146 0.642 sum -10.928 10.434 -2.049 15.248 Atomic orbital electron populations 1.20571 0.87050 1.03950 1.03318 1.18989 0.99503 0.90541 1.05078 1.25602 0.97512 1.04650 1.07818 1.82975 1.05164 0.95251 1.67068 1.24468 0.97586 0.98425 1.21158 1.17626 0.81778 0.88175 0.76538 1.90858 1.81245 1.19631 1.47372 1.43252 1.04705 1.09449 1.72045 1.18380 0.86674 0.87687 0.96506 1.21527 0.90143 1.01003 1.16005 1.17991 0.94175 0.91017 0.86089 1.19876 0.91977 1.00964 1.38378 0.89501 1.26865 1.04420 0.95436 0.91092 1.69805 1.38845 1.11247 1.23555 0.85141 0.75954 0.78130 0.79851 1.18346 1.18893 1.18365 1.21864 0.96541 0.97066 1.16404 1.21948 0.89443 0.97287 0.95172 1.67333 1.38629 0.98880 1.25541 1.20868 0.90633 1.00975 0.96369 0.90284 0.89495 0.91139 0.77849 0.74605 0.85733 0.89497 0.86332 0.83231 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 10.13 71.24 0.72 -0.46 16 2 C -0.13 -2.58 5.78 -21.05 -0.12 -2.70 16 3 C -0.22 -3.79 10.67 66.82 0.71 -3.08 16 4 S 0.23 5.08 22.16 -56.49 -1.25 3.83 16 5 C -0.30 -9.45 6.45 24.07 0.16 -9.29 16 6 C 0.57 24.26 7.74 86.41 0.67 24.93 16 7 O -0.52 -26.06 15.09 -4.37 -0.07 -26.12 16 8 N -0.65 -27.99 5.38 -312.33 -1.68 -29.67 16 9 C 0.33 17.19 7.42 132.79 0.98 18.18 16 10 C -0.26 -13.82 8.63 23.00 0.20 -13.62 16 11 C 0.12 6.25 5.60 -21.12 -0.12 6.13 16 12 C -0.48 -24.92 9.12 23.52 0.21 -24.71 16 13 H 0.09 4.27 7.90 -2.91 -0.02 4.24 16 14 C 0.04 1.88 5.20 85.29 0.44 2.33 16 15 N -0.81 -39.65 10.92 21.84 0.24 -39.41 16 16 Si 0.99 35.52 29.59 68.60 2.03 37.55 16 17 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 18 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 19 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 20 C -0.30 -14.88 9.85 22.60 0.22 -14.66 16 21 C 0.11 5.68 11.10 84.27 0.94 6.62 16 22 N -0.58 -31.44 7.85 -194.31 -1.53 -32.97 16 23 C -0.05 -1.49 9.80 21.72 0.21 -1.27 16 24 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.09 0.79 8.12 -2.39 -0.02 0.77 16 26 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 27 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 28 H 0.42 15.17 7.82 -92.71 -0.72 14.44 16 29 H 0.12 6.51 6.21 -2.91 -0.02 6.49 16 30 H 0.29 12.82 8.29 -92.71 -0.77 12.06 16 31 H 0.12 5.40 8.06 -2.91 -0.02 5.38 16 32 H 0.15 6.39 8.06 -2.91 -0.02 6.36 16 33 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -69.24 306.65 3.41 -65.83 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.43 Total: 32.57 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 5.23 Total: -11.61 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -2.97 Total: -102.04 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.07 Total: -26.12 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.55 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -1.25 Total: 3.83 kcal Total: -69.24 3.41 -65.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534502124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.594 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds