Wall clock time and date at job start Tue Mar 31 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28946 * 124.83955 * 2 1 4 4 C 1.31827 * 117.20485 * 180.02562 * 3 2 1 5 5 C 1.34471 * 114.28482 * 359.97438 * 4 3 2 6 6 N 1.39586 * 126.07437 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99904 * 180.02562 * 6 5 4 8 8 O 1.21647 * 120.00193 * 0.02562 * 7 6 5 9 9 C 1.47356 * 119.99623 * 179.97438 * 7 6 5 10 10 C 1.39276 * 120.28925 * 355.35584 * 9 7 6 11 11 C 1.38173 * 120.09097 * 179.97438 * 10 9 7 12 12 C 1.38866 * 120.67974 * 359.97438 * 11 10 9 13 13 C 1.37561 * 120.58346 * 0.02878 * 12 11 10 14 14 C 1.40726 * 119.88223 * 359.69326 * 13 12 11 15 15 C 1.40854 * 120.33099 * 180.27861 * 14 13 12 16 16 H 1.08001 * 119.99983 * 215.82876 * 15 14 13 17 17 C 1.40269 * 119.99706 * 35.83031 * 15 14 13 18 18 N 1.30633 * 120.00106 * 8.98338 * 17 15 14 19 19 Si 1.86804 * 119.99846 * 188.98204 * 17 15 14 20 20 H 1.48509 * 109.46938 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46968 * 119.99799 * 19 17 15 22 22 H 1.48500 * 109.47005 * 240.00261 * 19 17 15 23 23 S 1.70954 * 124.83365 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47811 * 269.98396 * 1 2 3 25 25 H 1.09004 * 109.46801 * 29.98012 * 1 2 3 26 26 H 1.08995 * 109.46990 * 149.97899 * 1 2 3 27 27 H 1.07994 * 122.85594 * 180.26582 * 4 3 2 28 28 H 0.96999 * 119.99820 * 359.97438 * 6 5 4 29 29 H 1.07998 * 119.95576 * 359.97438 * 10 9 7 30 30 H 1.07993 * 119.65885 * 179.97438 * 11 10 9 31 31 H 1.08000 * 119.70294 * 180.02562 * 12 11 10 32 32 H 1.07996 * 120.05615 * 179.97438 * 13 12 11 33 33 H 0.97000 * 119.99558 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0583 0.0000 4 6 3.5502 0.8832 -0.0005 5 6 3.9355 -0.4051 -0.0004 6 7 5.2519 -0.8693 -0.0014 7 6 5.4993 -2.1942 -0.0017 8 8 4.5753 -2.9855 -0.0016 9 6 6.8890 -2.6842 -0.0033 10 6 7.9499 -1.7873 -0.1019 11 6 9.2515 -2.2512 -0.1025 12 6 9.5193 -3.6102 -0.0049 13 6 8.4927 -4.5206 0.0937 14 6 7.1582 -4.0742 0.1025 15 6 6.0999 -4.9976 0.2090 16 1 5.1766 -4.8246 -0.3238 17 6 6.2454 -6.1420 1.0070 18 7 7.2859 -6.2664 1.7870 19 14 4.9511 -7.4880 0.9544 20 1 3.8808 -7.1084 -0.0025 21 1 5.5781 -8.7607 0.5157 22 1 4.3659 -7.6650 2.3077 23 16 2.4835 -1.4032 -0.0006 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 4.2515 1.7045 0.0036 28 1 5.9887 -0.2384 -0.0026 29 1 7.7551 -0.7277 -0.1780 30 1 10.0688 -1.5496 -0.1797 31 1 10.5426 -3.9555 -0.0064 32 1 8.7108 -5.5756 0.1688 33 1 7.3866 -7.0580 2.3386 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566670117.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:43 Heat of formation + Delta-G solvation = 26.180895 kcal Electronic energy + Delta-G solvation = -19569.638453 eV Core-core repulsion = 16493.734604 eV Total energy + Delta-G solvation = -3075.903849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78368 -38.91324 -37.08478 -34.63549 -33.75999 -31.40653 -30.17898 -29.74016 -27.13391 -25.52631 -23.65787 -22.60533 -21.16889 -20.27002 -19.67264 -17.66384 -17.49744 -16.61173 -15.84886 -15.39475 -14.99485 -14.60786 -14.29041 -14.02490 -13.87591 -13.34770 -13.09193 -12.87823 -12.53835 -12.47638 -12.23733 -11.79862 -11.29162 -11.26032 -11.07514 -10.83241 -10.69273 -10.55255 -10.31735 -9.86001 -9.44529 -9.29565 -8.68751 -8.65090 -7.87939 -7.62327 -7.52019 -6.98355 -4.59611 1.08931 1.50532 2.11089 2.23667 2.65459 3.01953 3.09427 3.11071 3.11692 3.51718 3.85114 3.88876 4.50283 4.56093 5.29205 5.40392 5.47366 5.55916 5.59984 5.78645 5.82971 5.92986 6.12250 6.31148 6.39164 6.73459 6.74946 6.92216 7.03052 7.25247 7.40375 7.60983 7.75856 7.90927 7.99794 8.10466 8.45611 8.61910 8.68282 8.89651 9.96766 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.005743 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.277142 B = 4874.482422 C = 6480.910422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.050 4.050 3 N -0.453 5.453 4 C -0.050 4.050 5 C 0.030 3.970 6 N -0.642 5.642 7 C 0.552 3.448 8 O -0.505 6.505 9 C -0.265 4.265 10 C -0.056 4.056 11 C -0.238 4.238 12 C -0.094 4.094 13 C -0.141 4.141 14 C 0.149 3.851 15 C -0.416 4.416 16 H 0.113 0.887 17 C 0.069 3.931 18 N -0.785 5.785 19 Si 0.916 3.084 20 H -0.254 1.254 21 H -0.272 1.272 22 H -0.272 1.272 23 S 0.240 5.760 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.167 0.833 28 H 0.412 0.588 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.140 6.011 -2.008 8.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.327 4.327 3 N -0.168 5.168 4 C -0.204 4.204 5 C -0.191 4.191 6 N -0.288 5.288 7 C 0.349 3.651 8 O -0.384 6.384 9 C -0.270 4.270 10 C -0.075 4.075 11 C -0.257 4.257 12 C -0.113 4.113 13 C -0.160 4.160 14 C 0.144 3.856 15 C -0.444 4.444 16 H 0.130 0.870 17 C -0.151 4.151 18 N -0.409 5.409 19 Si 0.740 3.260 20 H -0.177 1.177 21 H -0.197 1.197 22 H -0.197 1.197 23 S 0.489 5.511 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.184 0.816 28 H 0.251 0.749 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.136 0.864 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.091 4.685 -1.828 7.899 hybrid contribution 0.891 0.663 0.250 1.139 sum -5.200 5.348 -1.578 7.624 Atomic orbital electron populations 1.20214 0.86086 1.03237 1.02979 1.27158 1.01953 0.94333 1.09283 1.66136 1.03863 1.32321 1.14507 1.21348 0.91765 0.93838 1.13461 1.23884 0.91760 0.96425 1.07000 1.43302 1.03294 1.09197 1.72977 1.18843 0.91015 0.79530 0.75699 1.90620 1.45655 1.52656 1.49427 1.19100 0.88710 0.94497 1.24722 1.20638 0.93090 0.96166 0.97581 1.20311 0.95022 0.95251 1.15158 1.20844 0.97655 0.93463 0.99325 1.21360 0.92086 0.98956 1.03577 1.17456 0.92942 0.89455 0.85726 1.20390 1.01559 1.00936 1.21521 0.86971 1.26192 0.96381 0.98708 0.93781 1.69711 1.26745 1.27372 1.17113 0.86096 0.81028 0.79338 0.79513 1.17729 1.19671 1.19710 1.85026 0.92362 1.05552 1.68158 0.90553 0.90274 0.90753 0.81563 0.74931 0.89167 0.88731 0.88752 0.86428 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.46 36.01 0.38 -0.34 16 2 C -0.05 -0.76 7.38 -13.49 -0.10 -0.86 16 3 N -0.45 -7.52 10.54 -11.68 -0.12 -7.64 16 4 C -0.05 -0.79 11.39 -18.88 -0.22 -1.01 16 5 C 0.03 0.52 7.25 -15.35 -0.11 0.41 16 6 N -0.64 -11.48 5.38 -11.61 -0.06 -11.54 16 7 C 0.55 12.11 7.69 -12.55 -0.10 12.01 16 8 O -0.51 -12.16 11.15 5.24 0.06 -12.10 16 9 C -0.27 -6.09 5.92 -104.37 -0.62 -6.71 16 10 C -0.06 -1.11 9.52 -39.22 -0.37 -1.49 16 11 C -0.24 -4.73 10.03 -39.37 -0.39 -5.13 16 12 C -0.09 -1.99 10.01 -39.60 -0.40 -2.38 16 13 C -0.14 -3.36 8.61 -38.89 -0.34 -3.70 16 14 C 0.15 3.75 5.48 -106.53 -0.58 3.17 16 15 C -0.42 -10.75 7.78 -37.83 -0.29 -11.05 16 16 H 0.11 2.99 5.73 -52.49 -0.30 2.69 16 17 C 0.07 1.68 5.25 -17.30 -0.09 1.59 16 18 N -0.78 -19.28 11.25 55.56 0.63 -18.66 16 19 Si 0.92 18.58 29.57 -169.99 -5.03 13.55 16 20 H -0.25 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 S 0.24 4.11 20.41 -107.50 -2.19 1.92 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.17 2.20 8.06 -52.49 -0.42 1.78 16 28 H 0.41 6.10 6.87 -40.82 -0.28 5.82 16 29 H 0.09 1.45 6.42 -52.49 -0.34 1.11 16 30 H 0.09 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.12 2.87 6.72 -52.49 -0.35 2.51 16 33 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 LS Contribution 299.03 15.07 4.51 4.51 Total: -1.00 -28.43 299.03 -8.39 -36.83 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -2.94 Total: 8.62 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -3.23 Total: -15.48 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.44 Total: -37.84 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.06 Total: -12.10 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -2.19 Total: 1.92 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.43 -8.39 -36.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566670117.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.006 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds