Wall clock time and date at job start Tue Mar 31 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28946 * 124.83955 * 2 1 4 4 C 1.31827 * 117.20485 * 180.02562 * 3 2 1 5 5 C 1.34471 * 114.28482 * 359.97438 * 4 3 2 6 6 N 1.39586 * 126.07437 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99904 * 180.02562 * 6 5 4 8 8 O 1.21647 * 120.00193 * 0.02562 * 7 6 5 9 9 C 1.47356 * 119.99623 * 179.97438 * 7 6 5 10 10 C 1.39276 * 120.28925 * 355.35584 * 9 7 6 11 11 C 1.38173 * 120.09097 * 179.97438 * 10 9 7 12 12 C 1.38866 * 120.67974 * 359.97438 * 11 10 9 13 13 C 1.37561 * 120.58346 * 0.02878 * 12 11 10 14 14 C 1.40726 * 119.88223 * 359.69326 * 13 12 11 15 15 C 1.40854 * 120.33099 * 180.27861 * 14 13 12 16 16 H 1.08001 * 119.99983 * 215.82876 * 15 14 13 17 17 C 1.40269 * 119.99706 * 35.83031 * 15 14 13 18 18 N 1.30633 * 120.00106 * 8.98338 * 17 15 14 19 19 Si 1.86804 * 119.99846 * 188.98204 * 17 15 14 20 20 H 1.48509 * 109.46938 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46968 * 119.99799 * 19 17 15 22 22 H 1.48500 * 109.47005 * 240.00261 * 19 17 15 23 23 S 1.70954 * 124.83365 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47811 * 269.98396 * 1 2 3 25 25 H 1.09004 * 109.46801 * 29.98012 * 1 2 3 26 26 H 1.08995 * 109.46990 * 149.97899 * 1 2 3 27 27 H 1.07994 * 122.85594 * 180.26582 * 4 3 2 28 28 H 0.96999 * 119.99820 * 359.97438 * 6 5 4 29 29 H 1.07998 * 119.95576 * 359.97438 * 10 9 7 30 30 H 1.07993 * 119.65885 * 179.97438 * 11 10 9 31 31 H 1.08000 * 119.70294 * 180.02562 * 12 11 10 32 32 H 1.07996 * 120.05615 * 179.97438 * 13 12 11 33 33 H 0.97000 * 119.99558 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0583 0.0000 4 6 3.5502 0.8832 -0.0005 5 6 3.9355 -0.4051 -0.0004 6 7 5.2519 -0.8693 -0.0014 7 6 5.4993 -2.1942 -0.0017 8 8 4.5753 -2.9855 -0.0016 9 6 6.8890 -2.6842 -0.0033 10 6 7.9499 -1.7873 -0.1019 11 6 9.2515 -2.2512 -0.1025 12 6 9.5193 -3.6102 -0.0049 13 6 8.4927 -4.5206 0.0937 14 6 7.1582 -4.0742 0.1025 15 6 6.0999 -4.9976 0.2090 16 1 5.1766 -4.8246 -0.3238 17 6 6.2454 -6.1420 1.0070 18 7 7.2859 -6.2664 1.7870 19 14 4.9511 -7.4880 0.9544 20 1 3.8808 -7.1084 -0.0025 21 1 5.5781 -8.7607 0.5157 22 1 4.3659 -7.6650 2.3077 23 16 2.4835 -1.4032 -0.0006 24 1 -0.3634 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 4.2515 1.7045 0.0036 28 1 5.9887 -0.2384 -0.0026 29 1 7.7551 -0.7277 -0.1780 30 1 10.0688 -1.5496 -0.1797 31 1 10.5426 -3.9555 -0.0064 32 1 8.7108 -5.5756 0.1688 33 1 7.3866 -7.0580 2.3386 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566670117.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:43 Heat of formation + Delta-G solvation = 9.223883 kcal Electronic energy + Delta-G solvation = -19570.373764 eV Core-core repulsion = 16493.734604 eV Total energy + Delta-G solvation = -3076.639161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29556 -40.32037 -38.75166 -36.20150 -35.46062 -32.65352 -31.83483 -31.34971 -28.47815 -27.23112 -24.94163 -24.19472 -22.86061 -21.79360 -21.08374 -19.35727 -18.94321 -18.05021 -17.32814 -17.11355 -16.39595 -16.15113 -15.93114 -15.40581 -15.18950 -15.05107 -14.54674 -14.28297 -14.08988 -13.68939 -13.43101 -13.15926 -12.95832 -12.89293 -12.54632 -12.44250 -12.29264 -12.00753 -11.95189 -11.54011 -11.18513 -10.73242 -10.21904 -10.04033 -9.53962 -9.29467 -8.96801 -8.73551 -6.43841 -0.24406 0.21897 0.44521 0.95463 0.97377 1.34316 1.46397 1.49476 1.79165 2.06739 2.18903 2.26235 2.73818 3.43872 3.63930 4.11194 4.20077 4.28551 4.36142 4.54934 4.69616 4.74551 4.81893 4.92665 5.03368 5.13638 5.21166 5.27651 5.43512 5.54472 5.74305 5.95808 6.05440 6.26930 6.36144 6.65545 6.82035 6.82624 6.90209 7.26325 8.23876 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.005743 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.277142 B = 4874.482422 C = 6480.910422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.022 4.022 3 N -0.474 5.474 4 C -0.029 4.029 5 C -0.002 4.002 6 N -0.628 5.628 7 C 0.550 3.450 8 O -0.535 6.535 9 C -0.281 4.281 10 C -0.053 4.053 11 C -0.232 4.232 12 C -0.089 4.089 13 C -0.172 4.172 14 C 0.121 3.879 15 C -0.457 4.457 16 H 0.091 0.909 17 C 0.034 3.966 18 N -0.817 5.817 19 Si 0.975 3.025 20 H -0.265 1.265 21 H -0.256 1.256 22 H -0.267 1.267 23 S 0.192 5.808 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.197 0.803 28 H 0.427 0.573 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 8.388 -2.132 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.300 4.300 3 N -0.189 5.189 4 C -0.183 4.183 5 C -0.221 4.221 6 N -0.275 5.275 7 C 0.345 3.655 8 O -0.415 6.415 9 C -0.286 4.286 10 C -0.072 4.072 11 C -0.251 4.251 12 C -0.108 4.108 13 C -0.191 4.191 14 C 0.117 3.883 15 C -0.485 4.485 16 H 0.109 0.891 17 C -0.182 4.182 18 N -0.443 5.443 19 Si 0.797 3.203 20 H -0.189 1.189 21 H -0.180 1.180 22 H -0.192 1.192 23 S 0.442 5.558 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.214 0.786 28 H 0.268 0.732 29 H 0.152 0.848 30 H 0.153 0.847 31 H 0.140 0.860 32 H 0.118 0.882 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.189 7.098 -1.955 9.618 hybrid contribution 0.892 0.228 0.241 0.952 sum -5.297 7.326 -1.714 9.202 Atomic orbital electron populations 1.20471 0.82983 1.04825 1.04629 1.27851 1.03530 0.92708 1.05918 1.66275 1.04156 1.32426 1.16061 1.21823 0.92135 0.93916 1.10442 1.23925 0.91226 0.96846 1.10073 1.42846 1.04162 1.07955 1.72518 1.18798 0.90468 0.80715 0.75499 1.90613 1.46350 1.54038 1.50529 1.19465 0.90380 0.94448 1.24270 1.21082 0.92333 0.97963 0.95824 1.20819 0.96206 0.95246 1.12785 1.21225 0.98297 0.93968 0.97294 1.21296 0.92607 0.98858 1.06337 1.17819 0.93517 0.90749 0.86244 1.20327 1.01386 1.03035 1.23770 0.89079 1.26811 0.98164 1.00099 0.93099 1.69734 1.28169 1.28293 1.18099 0.85245 0.78498 0.77388 0.79215 1.18908 1.17998 1.19166 1.85226 0.93891 1.07798 1.68903 0.88723 0.88789 0.89011 0.78639 0.73217 0.84820 0.84718 0.86027 0.88180 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.46 71.24 0.75 -0.58 16 2 C -0.02 -0.63 7.38 88.53 0.65 0.02 16 3 N -0.47 -14.54 10.54 -190.88 -2.01 -16.55 16 4 C -0.03 -0.86 11.39 83.83 0.96 0.10 16 5 C 0.00 -0.06 7.25 82.59 0.60 0.54 16 6 N -0.63 -21.76 5.38 -308.89 -1.66 -23.42 16 7 C 0.55 24.41 7.69 86.64 0.67 25.08 16 8 O -0.54 -26.87 11.15 -4.18 -0.05 -26.92 16 9 C -0.28 -12.95 5.92 -19.70 -0.12 -13.06 16 10 C -0.05 -2.00 9.52 22.50 0.21 -1.79 16 11 C -0.23 -8.46 10.03 22.40 0.22 -8.24 16 12 C -0.09 -3.65 10.01 22.26 0.22 -3.43 16 13 C -0.17 -8.43 8.61 22.72 0.20 -8.23 16 14 C 0.12 6.32 5.48 -21.10 -0.12 6.21 16 15 C -0.46 -25.00 7.78 23.40 0.18 -24.82 16 16 H 0.09 5.23 5.73 -2.91 -0.02 5.21 16 17 C 0.03 1.74 5.25 85.37 0.45 2.19 16 18 N -0.82 -41.95 11.25 21.88 0.25 -41.71 16 19 Si 0.98 39.85 29.57 68.60 2.03 41.88 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 21 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 23 S 0.19 6.56 20.41 -56.49 -1.15 5.40 16 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.20 4.45 8.06 -2.91 -0.02 4.42 16 28 H 0.43 11.58 6.87 -92.71 -0.64 10.94 16 29 H 0.13 3.74 6.42 -2.91 -0.02 3.72 16 30 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 31 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 32 H 0.10 5.14 6.72 -2.91 -0.02 5.12 16 33 H 0.29 13.45 8.29 -92.71 -0.77 12.68 16 Total: -1.00 -64.64 299.03 2.81 -61.83 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.53 Total: 25.48 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 4.87 Total: -26.00 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -3.43 Total: -81.68 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 16 Polarization: 6.56 SS G_CDS: -1.15 Total: 5.40 kcal Total: -64.64 2.81 -61.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566670117.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.055 kcal (2) G-P(sol) polarization free energy of solvation -64.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds