Wall clock time and date at job start Tue Mar 31 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47313 * 2 1 4 4 C 1.50702 * 109.47000 * 239.99656 * 2 1 3 5 5 H 1.07999 * 119.99664 * 275.10669 * 4 2 1 6 6 C 1.37873 * 119.99856 * 95.11368 * 4 2 1 7 7 N 1.31518 * 120.00041 * 174.73006 * 6 4 2 8 8 Si 1.86798 * 119.99855 * 354.72342 * 6 4 2 9 9 H 1.48501 * 109.47051 * 94.55599 * 8 6 4 10 10 H 1.48506 * 109.47025 * 214.54835 * 8 6 4 11 11 H 1.48498 * 109.47586 * 334.55033 * 8 6 4 12 12 O 1.45205 * 109.47002 * 119.99956 * 2 1 3 13 13 C 1.34236 * 116.99863 * 270.00218 * 12 2 1 14 14 O 1.20832 * 119.99572 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99925 * 180.02562 * 13 12 2 16 16 C 1.50703 * 109.18676 * 75.86801 * 15 13 12 17 17 O 1.20817 * 120.00364 * 240.61563 * 16 15 13 18 18 O 1.34235 * 119.99808 * 60.61791 * 16 15 13 19 19 C 1.52574 * 109.22544 * 316.48644 * 15 13 12 20 20 C 1.53090 * 109.95884 * 310.35588 * 19 15 13 21 21 S 1.81753 * 108.94589 * 296.91364 * 20 19 15 22 22 C 1.82086 * 102.08651 * 53.22335 * 21 20 19 23 23 C 1.52582 * 109.22394 * 195.24843 * 15 13 12 24 24 H 1.08999 * 109.47259 * 65.00838 * 1 2 3 25 25 H 1.09002 * 109.47142 * 185.00382 * 1 2 3 26 26 H 1.09004 * 109.47214 * 305.00229 * 1 2 3 27 27 H 0.96998 * 119.99815 * 179.97438 * 7 6 4 28 28 H 0.96701 * 116.99529 * 180.02562 * 18 16 15 29 29 H 1.09005 * 109.38828 * 190.20727 * 19 15 13 30 30 H 1.09000 * 109.30952 * 70.45745 * 19 15 13 31 31 H 1.09003 * 109.57898 * 56.78259 * 20 19 15 32 32 H 1.08997 * 109.57950 * 177.04225 * 20 19 15 33 33 H 1.09003 * 109.56123 * 186.96623 * 22 21 20 34 34 H 1.09003 * 109.64542 * 66.68082 * 22 21 20 35 35 H 1.08995 * 109.38569 * 169.79240 * 23 15 13 36 36 H 1.08995 * 109.39108 * 289.49672 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1338 -1.7857 -1.2295 6 6 2.3624 0.0122 -2.3573 7 7 2.8979 -0.5945 -3.3941 8 14 2.0490 1.8529 -2.4113 9 1 3.2809 2.5768 -2.0068 10 1 1.6720 2.2505 -3.7916 11 1 0.9451 2.1947 -1.4788 12 8 2.0140 -0.6845 1.1856 13 6 2.2171 0.0641 2.2812 14 8 1.9981 1.2520 2.2503 15 6 2.7193 -0.5770 3.5493 16 6 4.1916 -0.8662 3.4086 17 8 4.5942 -2.0026 3.4869 18 8 5.0557 0.1389 3.1964 19 6 1.9701 -1.8857 3.7815 20 6 0.4621 -1.6542 3.6546 21 16 -0.0694 -0.5013 4.9552 22 6 1.0646 0.9017 4.7079 23 6 2.5049 0.3824 4.7162 24 1 -0.3634 0.4342 -0.9314 25 1 -0.3633 -1.0238 0.0896 26 1 -0.3634 0.5895 0.8418 27 1 3.1297 -0.0861 -4.1869 28 1 5.9900 -0.0958 3.1125 29 1 2.1960 -2.2597 4.7801 30 1 2.2873 -2.6190 3.0401 31 1 0.2389 -1.2288 2.6761 32 1 -0.0639 -2.6019 3.7694 33 1 0.9323 1.6243 5.5132 34 1 0.8540 1.3789 3.7508 35 1 2.6958 -0.1398 5.6537 36 1 3.1931 1.2227 4.6250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987716.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:14 Heat of formation + Delta-G solvation = -179.736260 kcal Electronic energy + Delta-G solvation = -22443.096225 eV Core-core repulsion = 19018.661467 eV Total energy + Delta-G solvation = -3424.434758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.35423 -39.68159 -36.97292 -36.36982 -35.56621 -33.23245 -31.61988 -30.77075 -28.87476 -25.52820 -23.74073 -23.43508 -22.82666 -20.75540 -19.45829 -18.42514 -17.57750 -17.34959 -16.84093 -16.58084 -16.01827 -15.44292 -14.68007 -14.59870 -14.22637 -13.91759 -13.71874 -13.19965 -12.95147 -12.88691 -12.71430 -12.53607 -12.47813 -12.17899 -12.04295 -11.63164 -11.42617 -11.29241 -11.10072 -10.76330 -10.72335 -10.61495 -10.12619 -9.92950 -9.68635 -9.64040 -9.28817 -8.80860 -7.72491 -6.37757 -4.42039 1.71588 1.87497 2.33255 2.46017 2.92728 3.04459 3.18508 3.21812 3.25993 4.16801 4.23684 4.29948 4.73568 4.76282 4.91044 5.10460 5.16547 5.25898 5.31298 5.38847 5.55670 5.70912 5.85068 5.87906 5.96510 6.03710 6.28742 6.33965 6.37538 6.51421 7.00384 7.13081 7.36314 7.72849 8.02225 8.37570 8.72638 9.20675 10.73210 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.006593 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.575306 B = 4245.597204 C = 4800.034649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.182 3.818 3 H 0.049 0.951 4 C -0.523 4.523 5 H 0.086 0.914 6 C 0.083 3.917 7 N -0.876 5.876 8 Si 0.867 3.133 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.257 1.257 12 O -0.337 6.337 13 C 0.463 3.537 14 O -0.498 6.498 15 C -0.052 4.052 16 C 0.502 3.498 17 O -0.493 6.493 18 O -0.505 6.505 19 C -0.100 4.100 20 C -0.086 4.086 21 S -0.277 6.277 22 C -0.095 4.095 23 C -0.099 4.099 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.271 0.729 28 H 0.416 0.584 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.772 1.504 15.883 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.130 3.870 3 H 0.067 0.933 4 C -0.560 4.560 5 H 0.104 0.896 6 C -0.122 4.122 7 N -0.512 5.512 8 Si 0.693 3.307 9 H -0.197 1.197 10 H -0.204 1.204 11 H -0.181 1.181 12 O -0.252 6.252 13 C 0.305 3.695 14 O -0.387 6.387 15 C -0.054 4.054 16 C 0.342 3.658 17 O -0.379 6.379 18 O -0.317 6.317 19 C -0.139 4.139 20 C -0.234 4.234 21 S -0.050 6.050 22 C -0.243 4.243 23 C -0.138 4.138 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.275 0.725 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.922 1.532 16.416 16.599 hybrid contribution 1.496 1.038 -1.246 2.206 sum -0.427 2.570 15.170 15.392 Atomic orbital electron populations 1.22312 0.97297 1.01157 1.00653 1.21061 0.91466 0.94161 0.80307 0.93344 1.20761 1.45645 0.96367 0.93209 0.89577 1.24904 0.93140 0.98579 0.95566 1.69876 1.39121 1.36911 1.05293 0.86993 0.80061 0.85433 0.78253 1.19704 1.20409 1.18093 1.86732 1.74973 1.43242 1.20296 1.22565 0.75549 0.85888 0.85543 1.90531 1.48217 1.16210 1.83789 1.20541 0.89995 1.00067 0.94835 1.22353 0.88363 0.82755 0.72337 1.90732 1.79154 1.22614 1.45414 1.84538 1.23179 1.40563 1.83409 1.21667 0.92690 0.94107 1.05460 1.23592 0.97702 1.01789 1.00270 1.86772 1.51355 1.19569 1.47348 1.23925 0.94054 0.97584 1.08733 1.21643 0.97933 0.98737 0.95515 0.91372 0.92409 0.95026 0.91879 0.72493 0.88741 0.87685 0.88633 0.86426 0.87133 0.86395 0.88931 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.23 37.16 0.34 -2.94 16 2 C 0.18 4.38 2.10 -27.88 -0.06 4.32 16 3 H 0.05 1.22 4.63 -51.93 -0.24 0.98 16 4 C -0.52 -14.43 9.24 -34.44 -0.32 -14.75 16 5 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 6 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 7 N -0.88 -25.58 13.96 55.43 0.77 -24.80 16 8 Si 0.87 20.72 26.55 -169.99 -4.51 16.20 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.26 -5.90 6.19 56.52 0.35 -5.55 16 12 O -0.34 -7.36 8.66 -39.27 -0.34 -7.70 16 13 C 0.46 8.77 4.54 36.01 0.16 8.93 16 14 O -0.50 -10.10 12.92 -18.75 -0.24 -10.34 16 15 C -0.05 -0.77 0.65 -157.24 -0.10 -0.87 16 16 C 0.50 7.59 6.88 36.01 0.25 7.84 16 17 O -0.49 -8.20 16.51 -18.74 -0.31 -8.51 16 18 O -0.50 -6.59 12.98 -39.27 -0.51 -7.10 16 19 C -0.10 -1.35 3.83 -26.90 -0.10 -1.45 16 20 C -0.09 -1.13 6.13 37.20 0.23 -0.90 16 21 S -0.28 -3.60 22.36 -107.50 -2.40 -6.00 16 22 C -0.10 -1.21 6.08 37.21 0.23 -0.98 16 23 C -0.10 -1.21 4.31 -26.89 -0.12 -1.32 16 24 H 0.07 1.43 7.28 -51.93 -0.38 1.05 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.42 3.37 9.10 45.56 0.41 3.78 16 29 H 0.09 1.09 8.06 -51.93 -0.42 0.67 16 30 H 0.10 1.54 7.69 -51.93 -0.40 1.14 16 31 H 0.10 1.48 6.27 -51.93 -0.33 1.15 16 32 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.12 1.81 5.19 -51.93 -0.27 1.54 16 35 H 0.09 0.93 8.06 -51.93 -0.42 0.51 16 36 H 0.10 1.16 7.78 -51.93 -0.40 0.76 16 LS Contribution 305.81 15.07 4.61 4.61 Total: -1.00 -31.77 305.81 -6.26 -38.03 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.74 Total: 5.52 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 0.41 Total: 0.09 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.77 Total: -24.80 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.40 Total: -33.65 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.51 Total: 16.20 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.40 Total: -6.00 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.77 -6.26 -38.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987716.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.703 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds