Wall clock time and date at job start Tue Mar 31 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47313 * 2 1 4 4 C 1.50702 * 109.47000 * 239.99656 * 2 1 3 5 5 H 1.07999 * 119.99664 * 275.10669 * 4 2 1 6 6 C 1.37873 * 119.99856 * 95.11368 * 4 2 1 7 7 N 1.31518 * 120.00041 * 174.73006 * 6 4 2 8 8 Si 1.86798 * 119.99855 * 354.72342 * 6 4 2 9 9 H 1.48501 * 109.47051 * 94.55599 * 8 6 4 10 10 H 1.48506 * 109.47025 * 214.54835 * 8 6 4 11 11 H 1.48498 * 109.47586 * 334.55033 * 8 6 4 12 12 O 1.45205 * 109.47002 * 119.99956 * 2 1 3 13 13 C 1.34236 * 116.99863 * 270.00218 * 12 2 1 14 14 O 1.20832 * 119.99572 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99925 * 180.02562 * 13 12 2 16 16 C 1.50703 * 109.18676 * 75.86801 * 15 13 12 17 17 O 1.20817 * 120.00364 * 240.61563 * 16 15 13 18 18 O 1.34235 * 119.99808 * 60.61791 * 16 15 13 19 19 C 1.52574 * 109.22544 * 316.48644 * 15 13 12 20 20 C 1.53090 * 109.95884 * 310.35588 * 19 15 13 21 21 S 1.81753 * 108.94589 * 296.91364 * 20 19 15 22 22 C 1.82086 * 102.08651 * 53.22335 * 21 20 19 23 23 C 1.52582 * 109.22394 * 195.24843 * 15 13 12 24 24 H 1.08999 * 109.47259 * 65.00838 * 1 2 3 25 25 H 1.09002 * 109.47142 * 185.00382 * 1 2 3 26 26 H 1.09004 * 109.47214 * 305.00229 * 1 2 3 27 27 H 0.96998 * 119.99815 * 179.97438 * 7 6 4 28 28 H 0.96701 * 116.99529 * 180.02562 * 18 16 15 29 29 H 1.09005 * 109.38828 * 190.20727 * 19 15 13 30 30 H 1.09000 * 109.30952 * 70.45745 * 19 15 13 31 31 H 1.09003 * 109.57898 * 56.78259 * 20 19 15 32 32 H 1.08997 * 109.57950 * 177.04225 * 20 19 15 33 33 H 1.09003 * 109.56123 * 186.96623 * 22 21 20 34 34 H 1.09003 * 109.64542 * 66.68082 * 22 21 20 35 35 H 1.08995 * 109.38569 * 169.79240 * 23 15 13 36 36 H 1.08995 * 109.39108 * 289.49672 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1338 -1.7857 -1.2295 6 6 2.3624 0.0122 -2.3573 7 7 2.8979 -0.5945 -3.3941 8 14 2.0490 1.8529 -2.4113 9 1 3.2809 2.5768 -2.0068 10 1 1.6720 2.2505 -3.7916 11 1 0.9451 2.1947 -1.4788 12 8 2.0140 -0.6845 1.1856 13 6 2.2171 0.0641 2.2812 14 8 1.9981 1.2520 2.2503 15 6 2.7193 -0.5770 3.5493 16 6 4.1916 -0.8662 3.4086 17 8 4.5942 -2.0026 3.4869 18 8 5.0557 0.1389 3.1964 19 6 1.9701 -1.8857 3.7815 20 6 0.4621 -1.6542 3.6546 21 16 -0.0694 -0.5013 4.9552 22 6 1.0646 0.9017 4.7079 23 6 2.5049 0.3824 4.7162 24 1 -0.3634 0.4342 -0.9314 25 1 -0.3633 -1.0238 0.0896 26 1 -0.3634 0.5895 0.8418 27 1 3.1297 -0.0861 -4.1869 28 1 5.9900 -0.0958 3.1125 29 1 2.1960 -2.2597 4.7801 30 1 2.2873 -2.6190 3.0401 31 1 0.2389 -1.2288 2.6761 32 1 -0.0639 -2.6019 3.7694 33 1 0.9323 1.6243 5.5132 34 1 0.8540 1.3789 3.7508 35 1 2.6958 -0.1398 5.6537 36 1 3.1931 1.2227 4.6250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987716.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:14 Heat of formation + Delta-G solvation = -200.372776 kcal Electronic energy + Delta-G solvation = -22443.991091 eV Core-core repulsion = 19018.661467 eV Total energy + Delta-G solvation = -3425.329624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.66822 -41.06122 -38.40481 -37.60851 -36.89544 -35.25248 -32.83789 -32.47578 -30.02294 -27.50180 -25.18337 -24.49990 -23.93592 -22.45197 -20.92307 -19.73514 -19.10807 -18.70391 -18.26450 -18.16016 -17.41764 -16.78949 -16.33106 -15.76852 -15.62842 -15.10080 -14.87449 -14.83742 -14.43450 -14.29315 -14.09647 -13.88692 -13.69165 -13.55362 -13.39646 -13.10715 -12.95994 -12.77136 -12.53632 -12.51635 -12.00078 -11.90404 -11.63068 -11.51290 -11.39176 -11.28437 -10.88948 -10.74212 -8.73945 -8.51063 -6.61395 0.59260 0.71387 0.99253 1.22597 1.27470 1.38103 1.43759 1.66829 1.78375 2.16925 2.84262 3.14073 3.21132 3.56407 3.75542 3.82475 4.08609 4.13283 4.19218 4.28551 4.40599 4.51865 4.56763 4.61984 4.73877 4.79242 4.82065 4.88372 4.95199 5.27467 5.32159 5.32570 5.52035 6.05701 6.47592 6.66070 6.71156 7.05889 8.64171 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.006593 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.575306 B = 4245.597204 C = 4800.034649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.187 3.813 3 H 0.039 0.961 4 C -0.535 4.535 5 H 0.045 0.955 6 C 0.034 3.966 7 N -0.921 5.921 8 Si 0.926 3.074 9 H -0.270 1.270 10 H -0.266 1.266 11 H -0.241 1.241 12 O -0.351 6.351 13 C 0.460 3.540 14 O -0.510 6.510 15 C -0.049 4.049 16 C 0.502 3.498 17 O -0.512 6.512 18 O -0.505 6.505 19 C -0.097 4.097 20 C -0.087 4.087 21 S -0.270 6.270 22 C -0.095 4.095 23 C -0.095 4.095 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.276 0.724 28 H 0.436 0.564 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 2.831 18.041 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.134 3.866 3 H 0.057 0.943 4 C -0.573 4.573 5 H 0.063 0.937 6 C -0.167 4.167 7 N -0.559 5.559 8 Si 0.748 3.252 9 H -0.195 1.195 10 H -0.191 1.191 11 H -0.164 1.164 12 O -0.267 6.267 13 C 0.303 3.697 14 O -0.400 6.400 15 C -0.051 4.051 16 C 0.343 3.657 17 O -0.400 6.400 18 O -0.319 6.319 19 C -0.136 4.136 20 C -0.235 4.235 21 S -0.043 6.043 22 C -0.242 4.242 23 C -0.134 4.134 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.299 0.701 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.109 0.891 35 H 0.141 0.859 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.343 2.865 18.590 18.955 hybrid contribution 1.681 0.572 -1.849 2.563 sum -0.662 3.438 16.742 17.104 Atomic orbital electron populations 1.22200 0.95044 1.02075 1.01388 1.20816 0.93024 0.92884 0.79921 0.94294 1.20898 1.46088 0.94803 0.95472 0.93654 1.25703 0.92737 1.03315 0.94963 1.69987 1.40721 1.38983 1.06177 0.86050 0.80391 0.79539 0.79178 1.19541 1.19061 1.16448 1.86674 1.75667 1.43608 1.20788 1.23267 0.74930 0.85762 0.85761 1.90526 1.48579 1.16811 1.84040 1.20724 0.89981 1.01143 0.93294 1.22379 0.88659 0.82682 0.71952 1.90730 1.79533 1.23323 1.46375 1.84499 1.24713 1.39952 1.82779 1.21697 0.92595 0.93009 1.06328 1.23578 0.97823 1.02841 0.99214 1.86764 1.51738 1.19360 1.46484 1.23919 0.94193 0.97874 1.08258 1.21745 0.97724 0.98556 0.95325 0.91347 0.91699 0.93233 0.91421 0.70105 0.86199 0.89392 0.91176 0.84496 0.84517 0.89091 0.85947 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.16 9.23 71.98 0.66 -5.50 16 2 C 0.19 8.97 2.10 29.85 0.06 9.03 16 3 H 0.04 1.94 4.63 -2.39 -0.01 1.93 16 4 C -0.54 -30.42 9.24 25.60 0.24 -30.18 16 5 H 0.05 2.86 8.06 -2.91 -0.02 2.84 16 6 C 0.03 1.93 5.47 84.65 0.46 2.40 16 7 N -0.92 -55.15 13.96 21.45 0.30 -54.86 16 8 Si 0.93 42.51 26.55 68.60 1.82 44.33 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.24 -10.37 6.19 99.48 0.62 -9.76 16 12 O -0.35 -15.46 8.66 -51.47 -0.45 -15.91 16 13 C 0.46 17.05 4.54 71.24 0.32 17.38 16 14 O -0.51 -20.11 12.92 21.95 0.28 -19.82 16 15 C -0.05 -1.37 0.65 -53.95 -0.04 -1.41 16 16 C 0.50 14.43 6.88 71.24 0.49 14.92 16 17 O -0.51 -16.43 16.51 21.99 0.36 -16.06 16 18 O -0.50 -12.25 12.98 -51.47 -0.67 -12.92 16 19 C -0.10 -2.46 3.83 30.48 0.12 -2.34 16 20 C -0.09 -2.16 6.13 72.01 0.44 -1.72 16 21 S -0.27 -6.32 22.36 -56.49 -1.26 -7.58 16 22 C -0.09 -2.15 6.08 72.01 0.44 -1.71 16 23 C -0.09 -2.02 4.31 30.49 0.13 -1.89 16 24 H 0.07 2.78 7.28 -2.39 -0.02 2.77 16 25 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.28 15.25 8.31 -92.71 -0.77 14.47 16 28 H 0.44 6.25 9.10 -74.06 -0.67 5.58 16 29 H 0.12 2.42 8.06 -2.38 -0.02 2.40 16 30 H 0.09 2.54 7.69 -2.39 -0.02 2.52 16 31 H 0.07 2.12 6.27 -2.39 -0.01 2.10 16 32 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.14 2.35 8.14 -2.39 -0.02 2.34 16 34 H 0.09 2.62 5.19 -2.39 -0.01 2.61 16 35 H 0.12 1.94 8.06 -2.39 -0.02 1.92 16 36 H 0.10 2.13 7.78 -2.39 -0.02 2.11 16 Total: -1.00 -69.39 305.81 4.08 -65.32 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.35 Total: 18.52 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 3.33 Total: -1.01 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.30 Total: -54.86 kcal Atomic # 8 Polarization: -64.25 SS G_CDS: -0.47 Total: -64.71 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.82 Total: 44.33 kcal Atomic # 16 Polarization: -6.32 SS G_CDS: -1.26 Total: -7.58 kcal Total: -69.39 4.08 -65.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987716.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.054 kcal (2) G-P(sol) polarization free energy of solvation -69.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds