Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46836 * 2 1 4 4 C 1.50696 * 109.46963 * 119.99886 * 2 1 3 5 5 H 1.08000 * 120.00542 * 120.00004 * 4 2 1 6 6 C 1.37881 * 120.00072 * 300.27568 * 4 2 1 7 7 N 1.31511 * 120.00009 * 359.72633 * 6 4 2 8 8 Si 1.86808 * 120.00011 * 179.72742 * 6 4 2 9 9 H 1.48496 * 109.47140 * 59.99786 * 8 6 4 10 10 H 1.48502 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47067 * 299.99756 * 8 6 4 12 12 O 1.45196 * 109.47067 * 239.99601 * 2 1 3 13 13 C 1.34237 * 116.99784 * 90.00188 * 12 2 1 14 14 O 1.20822 * 120.00014 * 359.97438 * 13 12 2 15 15 C 1.50693 * 119.99869 * 180.02562 * 13 12 2 16 16 C 1.50703 * 109.22301 * 284.04742 * 15 13 12 17 17 O 1.20830 * 119.99695 * 120.00163 * 16 15 13 18 18 O 1.34222 * 120.00299 * 300.00525 * 16 15 13 19 19 C 1.52581 * 109.22778 * 164.68837 * 15 13 12 20 20 C 1.53095 * 109.95517 * 310.35406 * 19 15 13 21 21 S 1.81750 * 108.84214 * 296.97112 * 20 19 15 22 22 C 1.81750 * 102.21719 * 53.26700 * 21 20 19 23 23 C 1.52585 * 109.23131 * 43.45320 * 15 13 12 24 24 H 1.09000 * 109.47436 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47192 * 299.99981 * 1 2 3 26 26 H 1.08999 * 109.47338 * 60.00121 * 1 2 3 27 27 H 0.97004 * 120.00222 * 180.02562 * 7 6 4 28 28 H 0.96698 * 117.00344 * 179.97438 * 18 16 15 29 29 H 1.09002 * 109.39041 * 70.50231 * 19 15 13 30 30 H 1.08997 * 109.39291 * 190.20420 * 19 15 13 31 31 H 1.09008 * 109.57632 * 177.16131 * 20 19 15 32 32 H 1.09001 * 109.57783 * 56.77881 * 20 19 15 33 33 H 1.08998 * 109.56871 * 186.92691 * 22 21 20 34 34 H 1.08999 * 109.67910 * 66.60653 * 22 21 20 35 35 H 1.08997 * 109.39287 * 169.79179 * 23 15 13 36 36 H 1.09003 * 109.38938 * 289.50014 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6945 -0.2426 2.4827 7 7 0.9384 0.8266 2.6034 8 14 2.3109 -1.1277 4.0080 9 1 3.7958 -1.1283 4.0138 10 1 1.8119 -0.4303 5.2204 11 1 1.8152 -2.5275 4.0022 12 8 2.0140 -0.6845 -1.1855 13 6 2.2171 0.0640 -2.2811 14 8 1.9974 1.2516 -2.2506 15 6 2.7182 -0.5773 -3.5494 16 6 4.1908 -0.8661 -3.4111 17 8 4.5948 -2.0014 -3.5009 18 8 5.0536 0.1376 -3.1882 19 6 2.5026 0.3816 -4.7165 20 6 1.0624 0.9007 -4.7070 21 16 -0.0683 -0.5008 -4.9530 22 6 0.4610 -1.6548 -3.6525 23 6 1.9690 -1.8863 -3.7807 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7010 1.1560 3.4844 28 1 5.9881 -0.0968 -3.1062 29 1 3.1908 1.2221 -4.6261 30 1 2.6928 -0.1407 -5.6540 31 1 0.9292 1.6232 -5.5124 32 1 0.8518 1.3761 -3.7490 33 1 -0.0651 -2.6023 -3.7689 34 1 0.2384 -1.2314 -2.6731 35 1 2.1940 -2.2605 -4.7794 36 1 2.2865 -2.6207 -3.0405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = -181.395146 kcal Electronic energy + Delta-G solvation = -22341.942889 eV Core-core repulsion = 18917.436196 eV Total energy + Delta-G solvation = -3424.506693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.30160 -39.61270 -36.88339 -36.33655 -35.48878 -33.40527 -31.55025 -29.87644 -28.72112 -25.44058 -23.67828 -23.39278 -22.80185 -20.86375 -19.34363 -18.33824 -17.46279 -17.28867 -16.70609 -16.27696 -15.85335 -15.30108 -14.74703 -14.52543 -14.25693 -13.91250 -13.64035 -13.16635 -12.98690 -12.83532 -12.56485 -12.31039 -12.13726 -12.01546 -11.64003 -11.52427 -11.28618 -11.07979 -10.93925 -10.71891 -10.57468 -10.50711 -10.36311 -9.90742 -9.70435 -9.56859 -9.05113 -8.58343 -7.65267 -6.27255 -4.35046 1.78168 1.90039 2.39617 2.53164 2.97856 3.17114 3.21497 3.25518 3.32303 4.23688 4.28889 4.35629 4.81294 4.82679 5.05841 5.16094 5.19031 5.32301 5.36780 5.45556 5.60835 5.75354 5.90988 5.97266 6.03192 6.34388 6.49379 6.74549 6.75695 6.95769 7.45355 7.59042 7.72992 7.76963 8.00687 8.36193 8.73360 9.30765 10.79950 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.005937 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.065187 B = 4714.873677 C = 5378.043544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.048 0.952 4 C -0.525 4.525 5 H 0.069 0.931 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.273 1.273 12 O -0.346 6.346 13 C 0.464 3.536 14 O -0.492 6.492 15 C -0.052 4.052 16 C 0.502 3.498 17 O -0.496 6.496 18 O -0.504 6.504 19 C -0.099 4.099 20 C -0.097 4.097 21 S -0.276 6.276 22 C -0.086 4.086 23 C -0.099 4.099 24 H 0.039 0.961 25 H 0.102 0.898 26 H 0.017 0.983 27 H 0.268 0.732 28 H 0.415 0.585 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 -1.972 -13.658 14.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.563 4.563 5 H 0.087 0.913 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.739 3.261 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.198 1.198 12 O -0.262 6.262 13 C 0.305 3.695 14 O -0.381 6.381 15 C -0.054 4.054 16 C 0.343 3.657 17 O -0.382 6.382 18 O -0.316 6.316 19 C -0.138 4.138 20 C -0.244 4.244 21 S -0.049 6.049 22 C -0.234 4.234 23 C -0.138 4.138 24 H 0.058 0.942 25 H 0.120 0.880 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.274 0.726 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.569 -1.827 -14.248 14.450 hybrid contribution 1.801 -0.283 1.862 2.606 sum 3.371 -2.110 -12.386 13.009 Atomic orbital electron populations 1.22193 0.97187 1.00321 1.01657 1.20753 0.91550 0.93940 0.77315 0.93394 1.20957 1.32836 1.13752 0.88763 0.91329 1.24871 0.94781 0.95059 0.99050 1.69873 1.35714 1.22451 1.24478 0.86320 0.79244 0.79616 0.80921 1.19952 1.20912 1.19839 1.86537 1.75241 1.43403 1.21006 1.22380 0.75842 0.85792 0.85476 1.90545 1.47725 1.16131 1.83678 1.20530 0.89824 1.00053 0.95011 1.22405 0.88427 0.82683 0.72198 1.90727 1.79159 1.22699 1.45646 1.84552 1.23118 1.40660 1.83234 1.21641 0.98016 0.98689 0.95438 1.23891 0.94023 0.97656 1.08857 1.86680 1.51624 1.19533 1.47098 1.23599 0.97597 1.01732 1.00501 1.21654 0.92801 0.94069 1.05294 0.94236 0.87951 0.96417 0.92193 0.72616 0.88433 0.89011 0.87114 0.86268 0.86511 0.88433 0.88843 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 9.32 37.16 0.35 -3.42 16 2 C 0.22 5.56 2.56 -27.89 -0.07 5.49 16 3 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 4 C -0.53 -14.38 8.90 -34.44 -0.31 -14.69 16 5 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.59 11.31 55.43 0.63 -23.96 16 8 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 O -0.35 -7.80 8.66 -39.27 -0.34 -8.14 16 13 C 0.46 9.09 4.54 36.00 0.16 9.26 16 14 O -0.49 -10.48 12.92 -18.75 -0.24 -10.73 16 15 C -0.05 -0.78 0.65 -157.24 -0.10 -0.89 16 16 C 0.50 7.57 6.88 36.01 0.25 7.81 16 17 O -0.50 -8.12 16.52 -18.75 -0.31 -8.43 16 18 O -0.50 -6.51 12.98 -39.24 -0.51 -7.01 16 19 C -0.10 -1.24 4.31 -26.90 -0.12 -1.36 16 20 C -0.10 -1.30 6.07 37.21 0.23 -1.07 16 21 S -0.28 -3.79 22.33 -107.50 -2.40 -6.19 16 22 C -0.09 -1.21 6.14 37.21 0.23 -0.98 16 23 C -0.10 -1.37 3.82 -26.89 -0.10 -1.47 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.10 2.67 6.06 -51.93 -0.31 2.36 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.41 3.23 9.10 45.56 0.41 3.64 16 29 H 0.10 1.20 7.79 -51.93 -0.40 0.79 16 30 H 0.09 0.95 8.06 -51.93 -0.42 0.54 16 31 H 0.11 1.22 8.14 -51.92 -0.42 0.80 16 32 H 0.12 1.95 5.18 -51.93 -0.27 1.68 16 33 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.10 1.63 6.27 -51.93 -0.33 1.31 16 35 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 36 H 0.10 1.53 7.70 -51.93 -0.40 1.13 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -30.84 308.16 -6.88 -37.72 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.74 Total: 6.04 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 0.42 Total: 0.33 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.63 Total: -23.96 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.40 Total: -34.32 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -3.79 SS G_CDS: -2.40 Total: -6.19 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.84 -6.88 -37.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.672 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds