Wall clock time and date at job start Tue Mar 31 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46836 * 2 1 4 4 C 1.50696 * 109.46963 * 119.99886 * 2 1 3 5 5 H 1.08000 * 120.00542 * 120.00004 * 4 2 1 6 6 C 1.37881 * 120.00072 * 300.27568 * 4 2 1 7 7 N 1.31511 * 120.00009 * 359.72633 * 6 4 2 8 8 Si 1.86808 * 120.00011 * 179.72742 * 6 4 2 9 9 H 1.48496 * 109.47140 * 59.99786 * 8 6 4 10 10 H 1.48502 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47067 * 299.99756 * 8 6 4 12 12 O 1.45196 * 109.47067 * 239.99601 * 2 1 3 13 13 C 1.34237 * 116.99784 * 90.00188 * 12 2 1 14 14 O 1.20822 * 120.00014 * 359.97438 * 13 12 2 15 15 C 1.50693 * 119.99869 * 180.02562 * 13 12 2 16 16 C 1.50703 * 109.22301 * 284.04742 * 15 13 12 17 17 O 1.20830 * 119.99695 * 120.00163 * 16 15 13 18 18 O 1.34222 * 120.00299 * 300.00525 * 16 15 13 19 19 C 1.52581 * 109.22778 * 164.68837 * 15 13 12 20 20 C 1.53095 * 109.95517 * 310.35406 * 19 15 13 21 21 S 1.81750 * 108.84214 * 296.97112 * 20 19 15 22 22 C 1.81750 * 102.21719 * 53.26700 * 21 20 19 23 23 C 1.52585 * 109.23131 * 43.45320 * 15 13 12 24 24 H 1.09000 * 109.47436 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47192 * 299.99981 * 1 2 3 26 26 H 1.08999 * 109.47338 * 60.00121 * 1 2 3 27 27 H 0.97004 * 120.00222 * 180.02562 * 7 6 4 28 28 H 0.96698 * 117.00344 * 179.97438 * 18 16 15 29 29 H 1.09002 * 109.39041 * 70.50231 * 19 15 13 30 30 H 1.08997 * 109.39291 * 190.20420 * 19 15 13 31 31 H 1.09008 * 109.57632 * 177.16131 * 20 19 15 32 32 H 1.09001 * 109.57783 * 56.77881 * 20 19 15 33 33 H 1.08998 * 109.56871 * 186.92691 * 22 21 20 34 34 H 1.08999 * 109.67910 * 66.60653 * 22 21 20 35 35 H 1.08997 * 109.39287 * 169.79179 * 23 15 13 36 36 H 1.09003 * 109.38938 * 289.50014 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6945 -0.2426 2.4827 7 7 0.9384 0.8266 2.6034 8 14 2.3109 -1.1277 4.0080 9 1 3.7958 -1.1283 4.0138 10 1 1.8119 -0.4303 5.2204 11 1 1.8152 -2.5275 4.0022 12 8 2.0140 -0.6845 -1.1855 13 6 2.2171 0.0640 -2.2811 14 8 1.9974 1.2516 -2.2506 15 6 2.7182 -0.5773 -3.5494 16 6 4.1908 -0.8661 -3.4111 17 8 4.5948 -2.0014 -3.5009 18 8 5.0536 0.1376 -3.1882 19 6 2.5026 0.3816 -4.7165 20 6 1.0624 0.9007 -4.7070 21 16 -0.0683 -0.5008 -4.9530 22 6 0.4610 -1.6548 -3.6525 23 6 1.9690 -1.8863 -3.7807 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7010 1.1560 3.4844 28 1 5.9881 -0.0968 -3.1062 29 1 3.1908 1.2221 -4.6261 30 1 2.6928 -0.1407 -5.6540 31 1 0.9292 1.6232 -5.5124 32 1 0.8518 1.3761 -3.7490 33 1 -0.0651 -2.6023 -3.7689 34 1 0.2384 -1.2314 -2.6731 35 1 2.1940 -2.2605 -4.7794 36 1 2.2865 -2.6207 -3.0405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:15 Heat of formation + Delta-G solvation = -200.239681 kcal Electronic energy + Delta-G solvation = -22342.760049 eV Core-core repulsion = 18917.436196 eV Total energy + Delta-G solvation = -3425.323853 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.64182 -41.02588 -38.35673 -37.59873 -36.87828 -35.41230 -32.66040 -31.79299 -29.97873 -27.50955 -25.19859 -24.49937 -23.94524 -22.63826 -20.81153 -19.61149 -18.83884 -18.70841 -18.23743 -17.94730 -17.30765 -16.79495 -16.42916 -15.73993 -15.68014 -15.09734 -14.90546 -14.72589 -14.30838 -14.09629 -13.89007 -13.80315 -13.60345 -13.38926 -13.24433 -13.01337 -12.85879 -12.76025 -12.50624 -12.43127 -12.21343 -11.94667 -11.65298 -11.59984 -11.37183 -11.06403 -10.75177 -10.63459 -8.74585 -8.32917 -6.50134 0.62122 0.70663 1.01629 1.39183 1.42419 1.43610 1.50347 1.73280 1.79983 2.35259 2.97918 3.14677 3.21323 3.59795 3.75269 3.84023 4.09200 4.19636 4.27187 4.39586 4.45582 4.60495 4.71936 4.73763 4.74697 4.82717 4.87529 4.92992 5.09826 5.32672 5.43262 5.56825 5.83214 5.98489 6.50478 6.71867 6.75689 7.21123 8.74164 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.005937 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.065187 B = 4714.873677 C = 5378.043544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.222 3.778 3 H 0.011 0.989 4 C -0.552 4.552 5 H 0.064 0.936 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.978 3.022 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.264 1.264 12 O -0.354 6.354 13 C 0.460 3.540 14 O -0.512 6.512 15 C -0.048 4.048 16 C 0.505 3.495 17 O -0.510 6.510 18 O -0.505 6.505 19 C -0.094 4.094 20 C -0.097 4.097 21 S -0.269 6.269 22 C -0.087 4.087 23 C -0.095 4.095 24 H 0.046 0.954 25 H 0.082 0.918 26 H 0.025 0.975 27 H 0.272 0.728 28 H 0.436 0.564 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.137 0.863 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.547 -2.907 -14.728 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.169 3.831 3 H 0.028 0.972 4 C -0.590 4.590 5 H 0.082 0.918 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.801 3.199 9 H -0.194 1.194 10 H -0.200 1.200 11 H -0.189 1.189 12 O -0.270 6.270 13 C 0.302 3.698 14 O -0.402 6.402 15 C -0.051 4.051 16 C 0.346 3.654 17 O -0.398 6.398 18 O -0.319 6.319 19 C -0.133 4.133 20 C -0.244 4.244 21 S -0.043 6.043 22 C -0.235 4.235 23 C -0.134 4.134 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.299 0.701 29 H 0.120 0.880 30 H 0.143 0.857 31 H 0.155 0.845 32 H 0.104 0.896 33 H 0.156 0.844 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.254 -2.752 -15.339 15.746 hybrid contribution 1.610 0.091 2.137 2.678 sum 3.864 -2.661 -13.201 14.010 Atomic orbital electron populations 1.21976 0.96369 1.00475 1.00971 1.20381 0.92116 0.92013 0.78558 0.97155 1.21231 1.33654 1.14082 0.90019 0.91762 1.25755 0.94591 0.95618 1.01930 1.69987 1.36206 1.23475 1.25406 0.85305 0.78800 0.78729 0.77062 1.19433 1.20014 1.18916 1.86517 1.75774 1.43546 1.21205 1.23247 0.75026 0.85658 0.85834 1.90543 1.48398 1.17189 1.84045 1.20708 0.90253 1.01058 0.93042 1.22285 0.88477 0.82660 0.71962 1.90726 1.79419 1.23196 1.46424 1.84512 1.24742 1.40071 1.82597 1.21742 0.97468 0.98597 0.95491 1.23871 0.94527 0.98023 1.08018 1.86645 1.52163 1.19307 1.46143 1.23588 0.98184 1.02730 0.99033 1.21693 0.92279 0.92977 1.06478 0.93522 0.89973 0.95605 0.91849 0.70058 0.87987 0.85711 0.84506 0.89608 0.84372 0.91659 0.86005 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.98 9.32 71.98 0.67 -6.31 16 2 C 0.22 11.82 2.56 29.85 0.08 11.90 16 3 H 0.01 0.63 7.16 -2.39 -0.02 0.62 16 4 C -0.55 -30.87 8.90 25.60 0.23 -30.64 16 5 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 6 C 0.02 1.16 5.30 84.66 0.45 1.61 16 7 N -0.91 -51.40 11.31 21.45 0.24 -51.15 16 8 Si 0.98 42.31 29.54 68.60 2.03 44.33 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 12 O -0.35 -16.38 8.66 -51.48 -0.45 -16.83 16 13 C 0.46 18.22 4.54 71.23 0.32 18.54 16 14 O -0.51 -22.41 12.92 21.98 0.28 -22.12 16 15 C -0.05 -1.40 0.65 -53.95 -0.04 -1.44 16 16 C 0.51 14.42 6.88 71.24 0.49 14.91 16 17 O -0.51 -15.83 16.52 21.95 0.36 -15.46 16 18 O -0.50 -12.21 12.98 -51.34 -0.67 -12.87 16 19 C -0.09 -2.16 4.31 30.49 0.13 -2.03 16 20 C -0.10 -2.44 6.07 72.01 0.44 -2.01 16 21 S -0.27 -6.90 22.33 -56.49 -1.26 -8.17 16 22 C -0.09 -2.35 6.14 72.01 0.44 -1.91 16 23 C -0.10 -2.48 3.82 30.49 0.12 -2.37 16 24 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.08 4.43 6.06 -2.38 -0.01 4.41 16 26 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.27 14.36 8.31 -92.71 -0.77 13.58 16 28 H 0.44 5.94 9.10 -74.06 -0.67 5.27 16 29 H 0.10 2.28 7.79 -2.39 -0.02 2.26 16 30 H 0.12 2.10 8.06 -2.39 -0.02 2.08 16 31 H 0.14 2.69 8.14 -2.38 -0.02 2.67 16 32 H 0.09 2.81 5.18 -2.39 -0.01 2.80 16 33 H 0.14 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.06 2.20 6.27 -2.39 -0.01 2.18 16 35 H 0.12 2.50 8.06 -2.39 -0.02 2.48 16 36 H 0.09 2.62 7.70 -2.39 -0.02 2.60 16 Total: -1.00 -67.22 308.16 4.31 -62.91 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.44 Total: 19.10 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 3.33 Total: 0.26 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.24 Total: -51.15 kcal Atomic # 8 Polarization: -66.82 SS G_CDS: -0.47 Total: -67.29 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: -6.90 SS G_CDS: -1.26 Total: -8.17 kcal Total: -67.22 4.31 -62.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.328 kcal (2) G-P(sol) polarization free energy of solvation -67.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds