Wall clock time and date at job start Tue Mar 31 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.35844 * 119.69225 * 269.72703 * 11 10 9 13 13 N 1.29833 * 123.36303 * 179.71930 * 12 11 10 14 14 C 1.35673 * 121.64458 * 0.56352 * 13 12 11 15 15 C 1.39613 * 121.57197 * 179.68597 * 14 13 12 16 16 C 1.38989 * 119.43429 * 180.02562 * 15 14 13 17 17 C 1.47954 * 119.76728 * 179.97438 * 16 15 14 18 18 O 1.21435 * 119.99966 * 0.02562 * 17 16 15 19 19 O 1.34681 * 120.00010 * 180.02562 * 17 16 15 20 20 C 1.40048 * 120.46795 * 0.02562 * 16 15 14 21 21 C 1.36589 * 120.57278 * 0.02562 * 20 16 15 22 22 C 1.39362 * 119.85740 * 359.97438 * 21 20 16 23 23 C 1.35335 * 119.68934 * 89.99775 * 11 10 9 24 24 O 1.21697 * 121.29512 * 359.96169 * 23 11 10 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 29 29 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 30 30 H 1.07997 * 118.32427 * 0.02562 * 12 11 10 31 31 H 1.08003 * 120.28412 * 359.97438 * 15 14 13 32 32 H 0.96698 * 116.99993 * 180.02562 * 19 17 16 33 33 H 1.08000 * 119.71183 * 180.02562 * 20 16 15 34 34 H 1.08003 * 120.07100 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.1814 -5.5161 1.1815 13 7 0.5294 -6.6357 1.2652 14 6 0.1369 -7.3153 0.1585 15 6 -0.5586 -8.5224 0.2503 16 6 -0.9388 -9.1817 -0.9127 17 6 -1.6756 -10.4617 -0.8240 18 8 -1.9465 -10.9323 0.2621 19 8 -2.0459 -11.1048 -1.9479 20 6 -0.6285 -8.6436 -2.1679 21 6 0.0524 -7.4639 -2.2690 22 6 0.4427 -6.7870 -1.1150 23 6 1.1770 -5.5117 -1.1743 24 8 1.4711 -5.0004 -2.2387 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 2.8718 -3.6044 -0.8895 29 1 2.8718 -3.6044 0.8904 30 1 1.4712 -5.0224 2.0973 31 1 -0.7984 -8.9407 1.2167 32 1 -2.5256 -11.9374 -1.8395 33 1 -0.9303 -9.1660 -3.0637 34 1 0.2878 -7.0565 -3.2411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067569.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:12 Heat of formation + Delta-G solvation = -81.159235 kcal Electronic energy + Delta-G solvation = -21468.553167 eV Core-core repulsion = 17945.241829 eV Total energy + Delta-G solvation = -3523.311338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.54020 -40.47553 -38.40498 -37.35449 -36.40352 -34.81614 -33.05121 -31.74950 -30.40851 -29.83160 -26.34210 -24.91003 -24.50762 -22.56202 -21.89024 -21.17134 -19.26034 -18.73431 -18.00831 -17.14577 -16.70604 -16.30023 -15.96331 -15.63033 -15.18617 -14.80619 -14.52921 -14.30299 -13.90307 -13.86243 -13.28128 -13.21840 -12.80704 -12.73740 -12.27279 -11.98700 -11.88810 -11.56210 -11.05475 -10.98452 -10.93036 -10.35000 -10.31075 -10.06248 -9.92094 -9.49729 -9.40842 -9.35328 -8.51937 -8.03749 -6.16328 -4.21896 0.07923 0.61804 1.97738 2.20423 2.61249 2.70925 2.94797 3.25260 3.30660 3.32367 3.91813 4.04388 4.23623 4.33686 4.54096 4.69256 4.83044 4.92788 5.08741 5.20318 5.31843 5.55616 5.70122 5.85304 5.93227 5.99554 6.06850 6.13877 6.30213 6.40441 6.52020 6.74718 7.37482 7.48503 7.55727 7.76940 7.85501 7.93798 8.13996 8.83077 9.43648 10.94873 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.036983 B = 0.003189 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.920389 B = 8776.828719 C = 8978.612632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.093 3.907 11 N -0.535 5.535 12 C 0.397 3.603 13 N -0.542 5.542 14 C 0.154 3.846 15 C -0.047 4.047 16 C -0.089 4.089 17 C 0.530 3.470 18 O -0.508 6.508 19 O -0.509 6.509 20 C -0.098 4.098 21 C -0.050 4.050 22 C -0.168 4.168 23 C 0.540 3.460 24 O -0.497 6.497 25 H 0.264 0.736 26 H 0.023 0.977 27 H 0.025 0.975 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.204 0.796 31 H 0.153 0.847 32 H 0.415 0.585 33 H 0.145 0.855 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 -18.816 -1.140 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.027 4.027 11 N -0.255 5.255 12 C 0.110 3.890 13 N -0.265 5.265 14 C 0.043 3.957 15 C -0.066 4.066 16 C -0.092 4.092 17 C 0.373 3.627 18 O -0.397 6.397 19 O -0.321 6.321 20 C -0.117 4.117 21 C -0.069 4.069 22 C -0.175 4.175 23 C 0.332 3.668 24 O -0.370 6.370 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.221 0.779 31 H 0.171 0.829 32 H 0.274 0.726 33 H 0.163 0.837 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.844 -18.567 -0.952 18.611 hybrid contribution 0.171 0.800 -0.611 1.021 sum -0.673 -17.768 -1.563 17.849 Atomic orbital electron populations 1.69951 1.06180 1.27197 1.49465 1.25000 0.94877 0.99489 0.94745 0.86553 0.79515 0.82585 0.78756 1.20066 1.21180 1.20032 1.20927 0.93059 0.90180 1.52507 0.92179 1.19433 0.94054 0.90671 0.98335 1.22576 0.96252 0.80052 1.03835 1.47071 1.48366 1.23521 1.06495 1.24884 0.86138 0.87837 0.90123 1.68709 1.19784 1.09098 1.28864 1.18665 0.95152 0.93997 0.87862 1.20905 0.94971 0.92155 0.98566 1.19008 1.02084 0.93365 0.94723 1.20858 0.76131 0.84264 0.81400 1.90901 1.52734 1.66785 1.29284 1.84550 1.70649 1.40330 1.36591 1.21049 0.98029 0.95708 0.96894 1.20743 0.94522 0.93376 0.98268 1.20992 1.04235 0.96845 0.95410 1.18375 0.79933 0.84590 0.83913 1.90879 1.53132 1.64727 1.28232 0.92610 0.95909 0.95702 0.89108 0.89448 0.77934 0.82936 0.72584 0.83748 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.53 -13.91 9.11 -34.44 -0.31 -14.22 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 10 C 0.09 1.69 5.30 -4.04 -0.02 1.67 16 11 N -0.54 -8.94 2.60 -118.79 -0.31 -9.25 16 12 C 0.40 5.52 11.40 -90.19 -1.03 4.49 16 13 N -0.54 -7.92 10.37 -12.03 -0.12 -8.05 16 14 C 0.15 2.26 6.62 -84.52 -0.56 1.70 16 15 C -0.05 -0.61 9.57 -38.79 -0.37 -0.98 16 16 C -0.09 -1.04 5.87 -104.96 -0.62 -1.66 16 17 C 0.53 5.66 8.27 34.71 0.29 5.95 16 18 O -0.51 -6.73 17.10 -19.22 -0.33 -7.06 16 19 O -0.51 -3.70 12.64 -40.44 -0.51 -4.21 16 20 C -0.10 -1.06 9.54 -39.50 -0.38 -1.44 16 21 C -0.05 -0.65 9.61 -39.76 -0.38 -1.03 16 22 C -0.17 -2.61 5.90 -104.67 -0.62 -3.22 16 23 C 0.54 9.80 7.67 -12.33 -0.09 9.70 16 24 O -0.50 -10.43 16.31 5.19 0.08 -10.34 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.75 7.46 -51.93 -0.39 1.37 16 29 H 0.09 1.32 7.99 -51.93 -0.41 0.90 16 30 H 0.20 2.05 7.98 -52.49 -0.42 1.64 16 31 H 0.15 1.90 7.63 -52.48 -0.40 1.50 16 32 H 0.42 1.09 9.11 45.56 0.42 1.51 16 33 H 0.14 1.20 7.57 -52.49 -0.40 0.80 16 34 H 0.15 1.76 7.82 -52.48 -0.41 1.35 16 LS Contribution 310.68 15.07 4.68 4.68 Total: -1.00 -33.71 310.68 -7.53 -41.24 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -2.40 Total: -0.34 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -4.34 Total: 2.72 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.30 Total: -42.39 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.76 Total: -21.61 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.71 -7.53 -41.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067569.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.922 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds