Wall clock time and date at job start Tue Mar 31 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.35844 * 119.69225 * 269.72703 * 11 10 9 13 13 N 1.29833 * 123.36303 * 179.71930 * 12 11 10 14 14 C 1.35673 * 121.64458 * 0.56352 * 13 12 11 15 15 C 1.39613 * 121.57197 * 179.68597 * 14 13 12 16 16 C 1.38989 * 119.43429 * 180.02562 * 15 14 13 17 17 C 1.47954 * 119.76728 * 179.97438 * 16 15 14 18 18 O 1.21435 * 119.99966 * 0.02562 * 17 16 15 19 19 O 1.34681 * 120.00010 * 180.02562 * 17 16 15 20 20 C 1.40048 * 120.46795 * 0.02562 * 16 15 14 21 21 C 1.36589 * 120.57278 * 0.02562 * 20 16 15 22 22 C 1.39362 * 119.85740 * 359.97438 * 21 20 16 23 23 C 1.35335 * 119.68934 * 89.99775 * 11 10 9 24 24 O 1.21697 * 121.29512 * 359.96169 * 23 11 10 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 29 29 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 30 30 H 1.07997 * 118.32427 * 0.02562 * 12 11 10 31 31 H 1.08003 * 120.28412 * 359.97438 * 15 14 13 32 32 H 0.96698 * 116.99993 * 180.02562 * 19 17 16 33 33 H 1.08000 * 119.71183 * 180.02562 * 20 16 15 34 34 H 1.08003 * 120.07100 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.1814 -5.5161 1.1815 13 7 0.5294 -6.6357 1.2652 14 6 0.1369 -7.3153 0.1585 15 6 -0.5586 -8.5224 0.2503 16 6 -0.9388 -9.1817 -0.9127 17 6 -1.6756 -10.4617 -0.8240 18 8 -1.9465 -10.9323 0.2621 19 8 -2.0459 -11.1048 -1.9479 20 6 -0.6285 -8.6436 -2.1679 21 6 0.0524 -7.4639 -2.2690 22 6 0.4427 -6.7870 -1.1150 23 6 1.1770 -5.5117 -1.1743 24 8 1.4711 -5.0004 -2.2387 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 2.8718 -3.6044 -0.8895 29 1 2.8718 -3.6044 0.8904 30 1 1.4712 -5.0224 2.0973 31 1 -0.7984 -8.9407 1.2167 32 1 -2.5256 -11.9374 -1.8395 33 1 -0.9303 -9.1660 -3.0637 34 1 0.2878 -7.0565 -3.2411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601067569.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:11 Heat of formation + Delta-G solvation = -102.940653 kcal Electronic energy + Delta-G solvation = -21469.497680 eV Core-core repulsion = 17945.241829 eV Total energy + Delta-G solvation = -3524.255851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.74684 -41.36180 -39.53267 -38.64075 -37.16194 -36.26540 -34.86268 -32.87687 -31.84113 -31.19596 -27.76833 -26.27771 -25.75220 -23.83810 -23.13901 -22.51693 -20.23519 -19.92699 -18.96923 -18.72433 -17.88458 -17.61171 -17.16401 -16.72252 -16.48899 -16.35616 -15.98821 -15.32031 -15.03491 -14.90534 -14.71583 -14.50789 -14.41857 -13.87421 -13.79631 -13.28306 -12.94866 -12.83466 -12.67655 -12.57349 -12.05778 -12.01655 -11.89552 -11.58496 -11.34141 -11.07081 -10.91921 -10.59569 -10.47843 -9.21676 -8.24083 -6.36580 -0.97768 -0.44082 0.92635 1.08340 1.39391 1.45109 1.46291 1.53656 1.84365 1.90940 2.40752 2.79030 2.92889 3.11253 3.14875 3.50493 3.79542 3.84971 3.88887 4.01442 4.17314 4.37424 4.46239 4.67788 4.73938 4.80598 4.96934 4.99232 5.17304 5.29180 5.39617 5.48254 5.49935 5.64626 5.74756 6.09149 6.52288 6.75773 6.79567 6.90283 7.34008 8.87929 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.036983 B = 0.003189 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.920389 B = 8776.828719 C = 8978.612632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.021 3.979 10 C 0.110 3.890 11 N -0.539 5.539 12 C 0.392 3.608 13 N -0.542 5.542 14 C 0.137 3.863 15 C -0.049 4.049 16 C -0.086 4.086 17 C 0.541 3.459 18 O -0.536 6.536 19 O -0.495 6.495 20 C -0.075 4.075 21 C -0.057 4.057 22 C -0.186 4.186 23 C 0.529 3.471 24 O -0.541 6.541 25 H 0.264 0.736 26 H 0.010 0.990 27 H -0.024 1.024 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.242 0.758 31 H 0.157 0.843 32 H 0.438 0.562 33 H 0.178 0.822 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.225 -20.188 -0.843 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.182 1.182 7 C -0.579 4.579 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.010 4.010 11 N -0.258 5.258 12 C 0.106 3.894 13 N -0.263 5.263 14 C 0.027 3.973 15 C -0.068 4.068 16 C -0.088 4.088 17 C 0.385 3.615 18 O -0.427 6.427 19 O -0.310 6.310 20 C -0.093 4.093 21 C -0.076 4.076 22 C -0.193 4.193 23 C 0.322 3.678 24 O -0.418 6.418 25 H 0.073 0.927 26 H 0.029 0.971 27 H -0.006 1.006 28 H 0.096 0.904 29 H 0.147 0.853 30 H 0.258 0.742 31 H 0.174 0.826 32 H 0.301 0.699 33 H 0.196 0.804 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.322 -20.005 -0.635 20.018 hybrid contribution -0.103 1.046 -0.762 1.298 sum -0.425 -18.960 -1.397 19.016 Atomic orbital electron populations 1.70102 1.08045 1.28029 1.51130 1.25981 0.95670 1.03578 0.94441 0.85446 0.78156 0.77721 0.79408 1.19554 1.21394 1.18197 1.21456 0.94024 0.91169 1.51282 0.90700 1.19238 0.94406 0.92755 0.95310 1.22211 0.94736 0.78879 1.05199 1.46996 1.48616 1.23035 1.07181 1.25619 0.85804 0.87767 0.90171 1.68728 1.19465 1.09225 1.28922 1.18842 0.96039 0.94796 0.87584 1.20988 0.94750 0.91631 0.99466 1.19205 1.01315 0.93781 0.94542 1.20541 0.75534 0.83771 0.81619 1.90906 1.53872 1.67406 1.30525 1.84489 1.70362 1.41499 1.34602 1.21336 0.95774 0.94390 0.97785 1.20911 0.94883 0.94063 0.97746 1.21010 1.05253 0.96216 0.96780 1.18901 0.79709 0.85395 0.83757 1.90835 1.55161 1.66102 1.29669 0.92736 0.97143 1.00578 0.90384 0.85338 0.74209 0.82566 0.69865 0.80417 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 42.46 29.54 68.60 2.03 44.49 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.54 -28.66 9.11 25.60 0.23 -28.43 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.02 1.02 5.30 29.85 0.16 1.18 16 10 C 0.11 4.04 5.30 86.38 0.46 4.50 16 11 N -0.54 -18.18 2.60 -647.64 -1.69 -19.86 16 12 C 0.39 10.58 11.40 180.20 2.06 12.64 16 13 N -0.54 -15.48 10.37 -191.96 -1.99 -17.47 16 14 C 0.14 3.99 6.62 39.62 0.26 4.25 16 15 C -0.05 -1.22 9.57 22.78 0.22 -1.00 16 16 C -0.09 -1.82 5.87 -20.08 -0.12 -1.94 16 17 C 0.54 10.09 8.27 70.40 0.58 10.67 16 18 O -0.54 -13.12 17.10 20.05 0.34 -12.78 16 19 O -0.50 -5.32 12.64 -55.90 -0.71 -6.03 16 20 C -0.07 -1.43 9.54 22.32 0.21 -1.22 16 21 C -0.06 -1.43 9.61 22.15 0.21 -1.22 16 22 C -0.19 -5.81 5.90 -19.90 -0.12 -5.93 16 23 C 0.53 19.83 7.67 86.53 0.66 20.49 16 24 O -0.54 -23.87 16.31 -4.34 -0.07 -23.94 16 25 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 28 H 0.08 3.07 7.46 -2.39 -0.02 3.05 16 29 H 0.13 3.62 7.99 -2.39 -0.02 3.60 16 30 H 0.24 4.35 7.98 -2.91 -0.02 4.32 16 31 H 0.16 3.75 7.63 -2.91 -0.02 3.72 16 32 H 0.44 0.61 9.11 -74.06 -0.67 -0.06 16 33 H 0.18 2.23 7.57 -2.91 -0.02 2.20 16 34 H 0.15 3.60 7.82 -2.91 -0.02 3.57 16 Total: -1.00 -75.67 310.68 3.97 -71.70 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 0.49 Total: 4.65 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 5.28 Total: 14.56 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -3.39 Total: -92.65 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.43 Total: -42.75 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -75.67 3.97 -71.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067569.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.240 kcal (2) G-P(sol) polarization free energy of solvation -75.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds