Wall clock time and date at job start Tue Mar 31 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86798 * 119.99696 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99790 * 3 2 1 5 5 H 1.48501 * 109.47293 * 30.00240 * 3 2 1 6 6 H 1.48498 * 109.47120 * 150.00289 * 3 2 1 7 7 C 1.39059 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99643 * 179.97438 * 7 2 1 9 9 N 1.36805 * 119.99803 * 0.27929 * 7 2 1 10 10 C 1.34775 * 119.99596 * 179.72679 * 9 7 2 11 11 O 1.21703 * 120.00218 * 359.97438 * 10 9 7 12 12 C 1.46905 * 120.00076 * 179.97438 * 10 9 7 13 13 N 1.38155 * 125.43664 * 0.02562 * 12 10 9 14 14 H 0.97001 * 125.61115 * 359.97000 * 13 12 10 15 15 C 1.37536 * 108.78284 * 179.97438 * 13 12 10 16 16 C 1.39191 * 133.16965 * 179.97438 * 15 13 12 17 17 C 1.37695 * 119.81845 * 180.02562 * 16 15 13 18 18 C 1.38938 * 120.64776 * 359.96706 * 17 16 15 19 19 C 1.36451 * 120.61339 * 0.02562 * 18 17 16 20 20 C 1.40124 * 119.82372 * 0.02562 * 19 18 17 21 21 C 1.36002 * 125.44241 * 179.71442 * 12 10 9 22 22 C 1.50698 * 126.14117 * 0.02562 * 21 12 10 23 23 C 1.50703 * 109.47147 * 90.02119 * 22 21 12 24 24 O 1.20817 * 120.00004 * 359.97438 * 23 22 21 25 25 O 1.34228 * 119.99747 * 180.02562 * 23 22 21 26 26 H 0.97005 * 120.00002 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00477 * 359.71503 * 9 7 2 28 28 H 1.08001 * 120.09250 * 359.97438 * 16 15 13 29 29 H 1.07999 * 119.67624 * 180.02562 * 17 16 15 30 30 H 1.08002 * 119.69170 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.08338 * 179.97438 * 19 18 17 32 32 H 1.09000 * 109.47557 * 210.02207 * 22 21 12 33 33 H 1.08998 * 109.46914 * 330.02221 * 22 21 12 34 34 H 0.96704 * 117.00074 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4951 2.0465 -1.4001 5 1 1.4450 2.6527 0.7001 6 1 3.5451 1.4403 0.7000 7 6 2.0089 -1.2043 -0.0005 8 1 3.0890 -1.2042 -0.0010 9 7 1.3249 -2.3890 -0.0068 10 6 1.9988 -3.5562 -0.0129 11 8 3.2158 -3.5561 -0.0133 12 6 1.2644 -4.8284 -0.0191 13 7 -0.1110 -4.9594 -0.0199 14 1 -0.7480 -4.2279 -0.0160 15 6 -0.4284 -6.2976 -0.0270 16 6 -1.6359 -6.9899 -0.0302 17 6 -1.6357 -8.3668 -0.0371 18 6 -0.4403 -9.0749 -0.0415 19 6 0.7561 -8.4187 -0.0386 20 6 0.7824 -7.0177 -0.0305 21 6 1.8296 -6.0653 -0.0311 22 6 3.3059 -6.3678 -0.0396 23 6 3.8039 -6.4801 1.3783 24 8 3.0387 -6.3295 2.3010 25 8 5.0979 -6.7465 1.6160 26 1 -0.4850 0.8401 0.0004 27 1 0.3549 -2.3891 -0.0068 28 1 -2.5704 -6.4486 -0.0265 29 1 -2.5740 -8.9017 -0.0400 30 1 -0.4581 -10.1548 -0.0473 31 1 1.6802 -8.9776 -0.0416 32 1 3.4812 -7.3084 -0.5618 33 1 3.8384 -5.5647 -0.5491 34 1 5.3704 -6.8086 2.5418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074938.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:57 Heat of formation + Delta-G solvation = -77.156708 kcal Electronic energy + Delta-G solvation = -22215.941167 eV Core-core repulsion = 18692.803392 eV Total energy + Delta-G solvation = -3523.137775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.33027 -39.59151 -38.22622 -36.40019 -35.70269 -34.38805 -32.94494 -31.50547 -30.05940 -29.20767 -27.43908 -25.48848 -23.06708 -22.10298 -21.68502 -20.02094 -18.84840 -18.26158 -17.67226 -17.43014 -16.72485 -16.05473 -15.65751 -15.22313 -14.93437 -14.43779 -14.23378 -14.00856 -13.73845 -13.53659 -13.23368 -12.85616 -12.65282 -12.34164 -12.03026 -11.75994 -11.40518 -11.37868 -11.20516 -11.05346 -10.71251 -10.56515 -10.44559 -10.15734 -9.78759 -9.46843 -8.75842 -8.28794 -7.95389 -7.42165 -6.71633 -4.05439 1.12128 1.84154 2.44440 2.73592 3.08681 3.13981 3.19640 3.28974 3.59783 3.96311 4.08734 4.23337 4.63926 4.89386 5.10205 5.11335 5.20657 5.31825 5.39540 5.60747 5.72677 5.83438 5.91236 6.00493 6.05356 6.17380 6.32297 6.67064 6.76674 6.86023 6.89596 6.98060 7.29069 7.32765 7.67815 7.83210 8.29470 8.34487 8.87918 9.19111 9.70911 10.44951 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.005218 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.789841 B = 5364.738009 C = 6784.980535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.297 4.297 8 H 0.112 0.888 9 N -0.538 5.538 10 C 0.484 3.516 11 O -0.578 6.578 12 C 0.093 3.907 13 N -0.578 5.578 14 H 0.420 0.580 15 C 0.099 3.901 16 C -0.125 4.125 17 C -0.108 4.108 18 C -0.149 4.149 19 C -0.073 4.073 20 C -0.088 4.088 21 C -0.123 4.123 22 C -0.038 4.038 23 C 0.486 3.514 24 O -0.510 6.510 25 O -0.523 6.523 26 H 0.278 0.722 27 H 0.389 0.611 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 -13.438 -0.870 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.178 4.178 3 Si 0.764 3.236 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.427 4.427 8 H 0.130 0.870 9 N -0.171 5.171 10 C 0.271 3.729 11 O -0.464 6.464 12 C -0.019 4.019 13 N -0.182 5.182 14 H 0.259 0.741 15 C -0.011 4.011 16 C -0.146 4.146 17 C -0.127 4.127 18 C -0.168 4.168 19 C -0.092 4.092 20 C -0.092 4.092 21 C -0.132 4.132 22 C -0.075 4.075 23 C 0.329 3.671 24 O -0.397 6.397 25 O -0.334 6.334 26 H 0.088 0.912 27 H 0.223 0.777 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.120 0.880 33 H 0.151 0.849 34 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -0.909 -12.989 -1.024 13.061 hybrid contribution -0.574 1.232 0.722 1.539 sum -1.483 -11.756 -0.301 11.853 Atomic orbital electron populations 1.69570 1.06258 1.29077 1.47865 1.25429 0.95725 1.00312 0.96334 0.85724 0.79339 0.79849 0.78707 1.19995 1.20633 1.19010 1.19848 0.93872 0.81783 1.47180 0.87023 1.41835 1.09110 1.04960 1.61214 1.16726 0.87239 0.81653 0.87308 1.90626 1.12100 1.85751 1.57906 1.20650 0.81430 0.96038 1.03804 1.42089 1.06451 1.06129 1.63522 0.74148 1.18271 0.95259 0.83248 1.04275 1.20032 0.94583 0.94080 1.05862 1.20715 0.97964 0.92829 1.01227 1.20507 0.92242 0.99377 1.04717 1.20274 0.97970 0.91754 0.99182 1.17977 0.91919 0.93220 1.06124 1.18427 0.92854 0.90347 1.11604 1.19615 0.91955 1.05404 0.90554 1.23513 0.79061 0.71517 0.93052 1.90690 1.56793 1.45636 1.46608 1.84536 1.29291 1.83791 1.35806 0.91218 0.77731 0.86303 0.86107 0.86436 0.86503 0.87973 0.84855 0.73988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.80 13.05 55.50 0.72 -22.08 16 2 C 0.03 0.66 5.50 -17.45 -0.10 0.56 16 3 Si 0.94 19.95 29.55 -169.99 -5.02 14.92 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.30 -7.92 9.68 -15.03 -0.15 -8.06 16 8 H 0.11 3.09 7.15 -52.49 -0.38 2.71 16 9 N -0.54 -13.33 5.27 -12.11 -0.06 -13.39 16 10 C 0.48 11.64 7.74 -12.75 -0.10 11.55 16 11 O -0.58 -15.15 14.14 5.19 0.07 -15.08 16 12 C 0.09 1.91 6.96 -82.31 -0.57 1.33 16 13 N -0.58 -10.17 6.08 -7.36 -0.04 -10.21 16 14 H 0.42 6.57 8.11 -40.82 -0.33 6.24 16 15 C 0.10 1.64 7.25 -83.96 -0.61 1.03 16 16 C -0.12 -1.71 10.07 -39.43 -0.40 -2.11 16 17 C -0.11 -1.31 10.02 -39.52 -0.40 -1.71 16 18 C -0.15 -1.84 9.97 -39.97 -0.40 -2.24 16 19 C -0.07 -1.04 10.06 -39.52 -0.40 -1.44 16 20 C -0.09 -1.51 6.11 -106.93 -0.65 -2.16 16 21 C -0.12 -2.33 4.67 -104.16 -0.49 -2.82 16 22 C -0.04 -0.63 5.69 -29.03 -0.17 -0.80 16 23 C 0.49 8.62 8.32 36.01 0.30 8.92 16 24 O -0.51 -10.78 16.79 -18.74 -0.31 -11.09 16 25 O -0.52 -7.37 13.42 -39.25 -0.53 -7.90 16 26 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 27 H 0.39 9.07 6.94 -40.82 -0.28 8.79 16 28 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 32 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.13 2.44 6.32 -51.93 -0.33 2.11 16 34 H 0.40 3.91 9.10 45.56 0.41 4.32 16 LS Contribution 307.99 15.07 4.64 4.64 Total: -1.00 -32.62 307.99 -6.80 -39.42 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -2.15 Total: 18.70 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -4.12 Total: 2.05 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.62 Total: -45.68 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.77 Total: -34.06 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.62 -6.80 -39.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074938.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.736 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds