Wall clock time and date at job start Tue Mar 31 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86798 * 119.99696 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99790 * 3 2 1 5 5 H 1.48501 * 109.47293 * 30.00240 * 3 2 1 6 6 H 1.48498 * 109.47120 * 150.00289 * 3 2 1 7 7 C 1.39059 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99643 * 179.97438 * 7 2 1 9 9 N 1.36805 * 119.99803 * 0.27929 * 7 2 1 10 10 C 1.34775 * 119.99596 * 179.72679 * 9 7 2 11 11 O 1.21703 * 120.00218 * 359.97438 * 10 9 7 12 12 C 1.46905 * 120.00076 * 179.97438 * 10 9 7 13 13 N 1.38155 * 125.43664 * 0.02562 * 12 10 9 14 14 H 0.97001 * 125.61115 * 359.97000 * 13 12 10 15 15 C 1.37536 * 108.78284 * 179.97438 * 13 12 10 16 16 C 1.39191 * 133.16965 * 179.97438 * 15 13 12 17 17 C 1.37695 * 119.81845 * 180.02562 * 16 15 13 18 18 C 1.38938 * 120.64776 * 359.96706 * 17 16 15 19 19 C 1.36451 * 120.61339 * 0.02562 * 18 17 16 20 20 C 1.40124 * 119.82372 * 0.02562 * 19 18 17 21 21 C 1.36002 * 125.44241 * 179.71442 * 12 10 9 22 22 C 1.50698 * 126.14117 * 0.02562 * 21 12 10 23 23 C 1.50703 * 109.47147 * 90.02119 * 22 21 12 24 24 O 1.20817 * 120.00004 * 359.97438 * 23 22 21 25 25 O 1.34228 * 119.99747 * 180.02562 * 23 22 21 26 26 H 0.97005 * 120.00002 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00477 * 359.71503 * 9 7 2 28 28 H 1.08001 * 120.09250 * 359.97438 * 16 15 13 29 29 H 1.07999 * 119.67624 * 180.02562 * 17 16 15 30 30 H 1.08002 * 119.69170 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.08338 * 179.97438 * 19 18 17 32 32 H 1.09000 * 109.47557 * 210.02207 * 22 21 12 33 33 H 1.08998 * 109.46914 * 330.02221 * 22 21 12 34 34 H 0.96704 * 117.00074 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4951 2.0465 -1.4001 5 1 1.4450 2.6527 0.7001 6 1 3.5451 1.4403 0.7000 7 6 2.0089 -1.2043 -0.0005 8 1 3.0890 -1.2042 -0.0010 9 7 1.3249 -2.3890 -0.0068 10 6 1.9988 -3.5562 -0.0129 11 8 3.2158 -3.5561 -0.0133 12 6 1.2644 -4.8284 -0.0191 13 7 -0.1110 -4.9594 -0.0199 14 1 -0.7480 -4.2279 -0.0160 15 6 -0.4284 -6.2976 -0.0270 16 6 -1.6359 -6.9899 -0.0302 17 6 -1.6357 -8.3668 -0.0371 18 6 -0.4403 -9.0749 -0.0415 19 6 0.7561 -8.4187 -0.0386 20 6 0.7824 -7.0177 -0.0305 21 6 1.8296 -6.0653 -0.0311 22 6 3.3059 -6.3678 -0.0396 23 6 3.8039 -6.4801 1.3783 24 8 3.0387 -6.3295 2.3010 25 8 5.0979 -6.7465 1.6160 26 1 -0.4850 0.8401 0.0004 27 1 0.3549 -2.3891 -0.0068 28 1 -2.5704 -6.4486 -0.0265 29 1 -2.5740 -8.9017 -0.0400 30 1 -0.4581 -10.1548 -0.0473 31 1 1.6802 -8.9776 -0.0416 32 1 3.4812 -7.3084 -0.5618 33 1 3.8384 -5.5647 -0.5491 34 1 5.3704 -6.8086 2.5418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074938.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:56 Heat of formation + Delta-G solvation = -100.400802 kcal Electronic energy + Delta-G solvation = -22216.949106 eV Core-core repulsion = 18692.803392 eV Total energy + Delta-G solvation = -3524.145715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.64952 -40.96025 -39.98983 -37.62018 -37.03139 -36.27855 -34.34244 -33.39060 -31.21574 -30.47763 -28.83834 -27.26413 -24.52904 -23.40225 -22.86412 -21.52271 -20.52404 -19.87578 -19.03559 -18.91853 -18.05864 -17.41243 -17.02594 -16.80043 -16.42951 -15.96716 -15.84818 -15.49413 -14.98695 -14.88050 -14.71817 -14.36843 -14.07418 -13.65030 -13.58771 -13.18680 -13.01528 -12.57140 -12.50997 -12.47926 -12.40395 -12.15827 -11.77421 -11.67282 -11.59861 -10.71562 -10.63427 -10.22114 -9.16333 -8.68915 -8.63216 -6.07953 -0.14669 0.73655 1.07787 1.33540 1.39150 1.42950 1.52336 1.96554 2.20496 2.21809 2.54476 2.92769 3.03708 3.17317 3.71668 3.89524 3.95889 4.19889 4.28752 4.36709 4.57029 4.58738 4.63886 4.70553 4.91801 4.97595 5.19496 5.28696 5.52506 5.62083 5.66765 5.72428 5.74430 5.86451 6.19931 6.37301 6.48138 6.92285 7.08613 7.28717 7.81500 8.53931 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.005218 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.789841 B = 5364.738009 C = 6784.980535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.008 4.008 3 Si 1.001 2.999 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.090 0.910 9 N -0.550 5.550 10 C 0.488 3.512 11 O -0.608 6.608 12 C 0.044 3.956 13 N -0.576 5.576 14 H 0.423 0.577 15 C 0.088 3.912 16 C -0.140 4.140 17 C -0.090 4.090 18 C -0.144 4.144 19 C -0.079 4.079 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.043 4.043 23 C 0.491 3.509 24 O -0.551 6.551 25 O -0.510 6.510 26 H 0.284 0.716 27 H 0.393 0.607 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.116 0.884 34 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 -15.964 -1.047 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.209 4.209 3 Si 0.823 3.177 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.108 0.892 9 N -0.183 5.183 10 C 0.276 3.724 11 O -0.495 6.495 12 C -0.068 4.068 13 N -0.180 5.180 14 H 0.262 0.738 15 C -0.021 4.021 16 C -0.160 4.160 17 C -0.109 4.109 18 C -0.162 4.162 19 C -0.098 4.098 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.080 4.080 23 C 0.335 3.665 24 O -0.441 6.441 25 O -0.324 6.324 26 H 0.093 0.907 27 H 0.227 0.773 28 H 0.158 0.842 29 H 0.178 0.822 30 H 0.173 0.827 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.134 0.866 34 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -1.912 -15.529 -1.202 15.692 hybrid contribution -0.296 1.663 0.785 1.862 sum -2.208 -13.866 -0.417 14.047 Atomic orbital electron populations 1.69627 1.07126 1.30084 1.48173 1.26213 0.96603 1.02810 0.95287 0.84810 0.77912 0.75968 0.78989 1.19118 1.19374 1.19456 1.19815 0.93298 0.83308 1.50137 0.89164 1.41799 1.09169 1.04883 1.62485 1.17270 0.87207 0.82654 0.85227 1.90573 1.13552 1.86732 1.58667 1.20152 0.82948 0.94829 1.08831 1.41967 1.05366 1.07013 1.63678 0.73784 1.18752 0.96571 0.82581 1.04192 1.20425 0.94302 0.95090 1.06184 1.21284 0.99732 0.92172 0.97698 1.21010 0.91399 1.01343 1.02486 1.20629 0.99997 0.90495 0.98639 1.18226 0.91316 0.94588 1.08240 1.18835 0.94169 0.90322 1.08622 1.19734 0.90846 1.06809 0.90628 1.23571 0.79616 0.70496 0.92785 1.90677 1.58035 1.47701 1.47728 1.84482 1.27264 1.82855 1.37769 0.90683 0.77332 0.84231 0.82219 0.82710 0.84469 0.83811 0.86610 0.71584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.81 13.05 21.68 0.28 -47.53 16 2 C -0.01 -0.39 5.50 84.96 0.47 0.07 16 3 Si 1.00 41.63 29.55 68.60 2.03 43.66 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.34 -18.89 9.68 84.11 0.81 -18.07 16 8 H 0.09 5.32 7.15 -2.91 -0.02 5.30 16 9 N -0.55 -28.88 5.27 -310.45 -1.64 -30.52 16 10 C 0.49 24.92 7.74 86.51 0.67 25.59 16 11 O -0.61 -33.73 14.14 -4.36 -0.06 -33.80 16 12 C 0.04 1.87 6.96 39.90 0.28 2.15 16 13 N -0.58 -20.87 6.08 -177.20 -1.08 -21.95 16 14 H 0.42 13.94 8.11 -92.71 -0.75 13.19 16 15 C 0.09 2.86 7.25 39.12 0.28 3.15 16 16 C -0.14 -3.44 10.07 22.37 0.23 -3.22 16 17 C -0.09 -1.75 10.02 22.31 0.22 -1.53 16 18 C -0.14 -2.85 9.97 22.02 0.22 -2.64 16 19 C -0.08 -2.00 10.06 22.31 0.22 -1.77 16 20 C -0.12 -3.96 6.11 -21.36 -0.13 -4.09 16 21 C -0.11 -4.19 4.67 -19.57 -0.09 -4.29 16 22 C -0.04 -1.44 5.69 29.10 0.17 -1.27 16 23 C 0.49 17.30 8.32 71.24 0.59 17.89 16 24 O -0.55 -23.52 16.79 21.99 0.37 -23.15 16 25 O -0.51 -13.78 13.42 -51.39 -0.69 -14.47 16 26 H 0.28 13.81 8.31 -92.70 -0.77 13.04 16 27 H 0.39 19.48 6.94 -92.71 -0.64 18.83 16 28 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 29 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 30 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 32 H 0.14 3.48 8.14 -2.39 -0.02 3.46 16 33 H 0.12 4.37 6.32 -2.39 -0.02 4.36 16 34 H 0.42 7.60 9.10 -74.05 -0.67 6.93 16 Total: -1.00 -73.97 307.99 2.29 -71.68 By element: Atomic # 1 Polarization: 44.97 SS G_CDS: -0.87 Total: 44.10 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 3.94 Total: 11.97 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -2.43 Total: -99.99 kcal Atomic # 8 Polarization: -71.04 SS G_CDS: -0.38 Total: -71.42 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -73.97 2.29 -71.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074938.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.717 kcal (2) G-P(sol) polarization free energy of solvation -73.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds