Wall clock time and date at job start Tue Mar 31 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99978 * 2 1 4 4 H 1.48498 * 109.47127 * 269.99483 * 3 2 1 5 5 H 1.48491 * 109.47265 * 29.99861 * 3 2 1 6 6 H 1.48501 * 109.46785 * 149.99998 * 3 2 1 7 7 C 1.38805 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99591 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99825 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99474 * 180.02562 * 9 7 2 11 11 C 1.50710 * 109.46573 * 180.02562 * 10 9 7 12 12 O 1.20823 * 119.99990 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99320 * 180.02562 * 11 10 9 14 14 C 1.45200 * 116.99499 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.47066 * 329.99832 * 14 13 11 16 16 C 1.52996 * 109.47373 * 89.99934 * 14 13 11 17 17 C 1.53000 * 109.47328 * 59.99813 * 16 14 13 18 18 C 1.52997 * 109.47060 * 60.00126 * 17 16 14 19 19 C 1.53006 * 109.47127 * 300.00449 * 18 17 16 20 20 C 1.52997 * 109.47164 * 59.99836 * 19 18 17 21 21 H 1.09001 * 109.47375 * 59.99966 * 20 19 18 22 22 C 1.50696 * 109.46910 * 180.02562 * 20 19 18 23 23 O 1.20831 * 120.00131 * 119.99917 * 22 20 19 24 24 O 1.34230 * 120.00181 * 299.99410 * 22 20 19 25 25 H 0.96998 * 119.99452 * 0.02562 * 1 2 3 26 26 H 1.08989 * 109.47458 * 60.00372 * 10 9 7 27 27 H 1.09004 * 109.47332 * 299.99464 * 10 9 7 28 28 H 1.09004 * 109.47368 * 300.00024 * 16 14 13 29 29 H 1.09001 * 109.47372 * 180.02562 * 16 14 13 30 30 H 1.09002 * 109.47398 * 180.02562 * 17 16 14 31 31 H 1.09001 * 109.47194 * 300.00476 * 17 16 14 32 32 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 33 33 H 1.08996 * 109.47853 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 35 35 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 36 36 H 0.96705 * 117.00464 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0021 12 8 6.3411 -2.2999 0.0025 13 8 6.0436 -4.4897 0.0016 14 6 7.4864 -4.6534 0.0022 15 1 7.9480 -3.8097 -0.5110 16 6 7.9925 -4.7117 1.4448 17 6 7.3446 -5.8959 2.1652 18 6 7.7108 -7.1943 1.4434 19 6 7.2048 -7.1359 0.0006 20 6 7.8527 -5.9518 -0.7196 21 1 8.9358 -6.0746 -0.7192 22 6 7.3538 -5.8940 -2.1404 23 8 6.7659 -4.9149 -2.5350 24 8 7.5625 -6.9303 -2.9677 25 1 -0.4849 0.8401 -0.0004 26 1 3.6440 -3.4314 -0.8892 27 1 3.6433 -3.4319 0.8907 28 1 7.7316 -3.7868 1.9592 29 1 9.0756 -4.8342 1.4453 30 1 7.7048 -5.9372 3.1931 31 1 6.2615 -5.7731 2.1647 32 1 8.7938 -7.3172 1.4438 33 1 7.2489 -8.0379 1.9562 34 1 6.1217 -7.0131 0.0002 35 1 7.4661 -8.0607 -0.5137 36 1 7.2237 -6.8472 -3.8697 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:05 Heat of formation + Delta-G solvation = -197.007815 kcal Electronic energy + Delta-G solvation = -21145.946914 eV Core-core repulsion = 17720.763205 eV Total energy + Delta-G solvation = -3425.183709 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.09183 -39.85208 -37.98331 -36.25964 -35.49915 -32.45685 -31.66537 -30.86366 -29.36606 -25.65306 -24.67285 -23.16639 -21.64384 -21.37066 -19.36904 -18.16092 -17.93830 -17.12447 -17.02879 -16.12459 -15.86345 -15.72399 -15.01095 -14.84975 -14.30695 -14.11205 -13.94314 -13.39194 -13.14154 -12.88632 -12.79591 -12.65902 -12.25517 -12.09537 -11.72141 -11.52640 -11.29611 -11.28262 -11.02124 -10.86542 -10.68927 -10.61323 -10.40089 -10.20400 -10.03336 -9.83179 -9.01946 -8.56254 -6.96884 -6.30291 -4.03487 2.05237 2.48309 2.68392 2.76673 3.14484 3.32465 3.48437 3.56075 4.14734 4.31348 4.38683 4.52279 4.67929 4.78122 4.82997 4.95329 5.03928 5.08419 5.08904 5.18895 5.28150 5.48638 5.55056 5.69142 5.73308 5.77261 5.82205 5.90777 6.00485 6.03049 6.16941 6.32801 6.70798 7.72472 7.92773 8.17138 8.41342 9.15134 10.78879 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.004097 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.361196 B = 6832.093465 C = 7210.624666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.521 4.521 8 H 0.091 0.909 9 S -0.139 6.139 10 C -0.098 4.098 11 C 0.486 3.514 12 O -0.491 6.491 13 O -0.342 6.342 14 C 0.103 3.897 15 H 0.093 0.907 16 C -0.135 4.135 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.110 4.110 20 C -0.073 4.073 21 H 0.124 0.876 22 C 0.478 3.522 23 O -0.495 6.495 24 O -0.519 6.519 25 H 0.271 0.729 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.000 -16.955 0.632 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.669 4.669 8 H 0.109 0.891 9 S 0.087 5.913 10 C -0.246 4.246 11 C 0.327 3.673 12 O -0.377 6.377 13 O -0.260 6.260 14 C 0.047 3.953 15 H 0.111 0.889 16 C -0.172 4.172 17 C -0.160 4.160 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.092 4.092 21 H 0.141 0.859 22 C 0.318 3.682 23 O -0.381 6.381 24 O -0.331 6.331 25 H 0.081 0.919 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 18.794 -15.468 0.927 24.358 hybrid contribution -0.908 -0.123 -0.777 1.201 sum 17.886 -15.590 0.150 23.728 Atomic orbital electron populations 1.69938 1.05880 1.27809 1.47850 1.24689 0.94444 0.98907 0.93111 0.86745 0.81852 0.83315 0.79995 1.19138 1.19825 1.15962 1.22281 0.87819 0.97729 1.59056 0.89125 1.84773 1.09897 0.99113 1.97526 1.22975 0.90151 1.04350 1.07082 1.23106 0.91794 0.80545 0.71855 1.90631 1.58788 1.43640 1.44621 1.86519 1.24135 1.31016 1.84335 1.22374 0.79815 0.96468 0.96602 0.88916 1.21963 1.00814 1.00321 0.94110 1.21541 1.02007 0.93651 0.98795 1.21534 1.01030 0.98117 0.94641 1.21524 1.01783 0.95764 0.95711 1.21223 1.02793 0.97595 0.87574 0.85859 1.23318 0.76597 0.79960 0.88290 1.90820 1.37553 1.32977 1.76748 1.84492 1.75858 1.45175 1.27609 0.91868 0.87388 0.87409 0.90257 0.90118 0.91465 0.90819 0.91701 0.91094 0.90148 0.90408 0.73080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 2 C 0.10 2.86 5.50 -17.43 -0.10 2.76 16 3 Si 0.86 21.81 27.74 -169.99 -4.72 17.10 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 8 H 0.09 2.75 8.03 -52.48 -0.42 2.33 16 9 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 10 C -0.10 -2.02 6.27 36.01 0.23 -1.80 16 11 C 0.49 9.40 7.95 36.01 0.29 9.69 16 12 O -0.49 -10.67 15.08 -18.75 -0.28 -10.95 16 13 O -0.34 -5.40 7.45 -45.47 -0.34 -5.74 16 14 C 0.10 1.29 1.71 -26.73 -0.05 1.25 16 15 H 0.09 1.35 7.11 -51.93 -0.37 0.98 16 16 C -0.13 -1.36 5.65 -26.73 -0.15 -1.51 16 17 C -0.12 -1.07 5.78 -26.73 -0.15 -1.23 16 18 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 19 C -0.11 -0.90 4.99 -26.73 -0.13 -1.04 16 20 C -0.07 -0.69 2.47 -91.77 -0.23 -0.92 16 21 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 22 C 0.48 5.54 7.48 36.00 0.27 5.81 16 23 O -0.50 -8.01 16.04 -24.97 -0.40 -8.41 16 24 O -0.52 -4.35 13.33 -39.26 -0.52 -4.88 16 25 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.11 2.18 8.14 -51.92 -0.42 1.76 16 27 H 0.11 2.05 8.14 -51.91 -0.42 1.63 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 35 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 36 H 0.41 1.99 9.10 45.56 0.41 2.41 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -35.36 318.02 -6.69 -42.05 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.13 Total: 0.23 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 0.13 Total: -2.79 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.78 Total: -25.82 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -1.54 Total: -29.99 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.10 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.36 -6.69 -42.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.956 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds