Wall clock time and date at job start Tue Mar 31 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99978 * 2 1 4 4 H 1.48498 * 109.47127 * 269.99483 * 3 2 1 5 5 H 1.48491 * 109.47265 * 29.99861 * 3 2 1 6 6 H 1.48501 * 109.46785 * 149.99998 * 3 2 1 7 7 C 1.38805 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99591 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99825 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99474 * 180.02562 * 9 7 2 11 11 C 1.50710 * 109.46573 * 180.02562 * 10 9 7 12 12 O 1.20823 * 119.99990 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99320 * 180.02562 * 11 10 9 14 14 C 1.45200 * 116.99499 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.47066 * 329.99832 * 14 13 11 16 16 C 1.52996 * 109.47373 * 89.99934 * 14 13 11 17 17 C 1.53000 * 109.47328 * 59.99813 * 16 14 13 18 18 C 1.52997 * 109.47060 * 60.00126 * 17 16 14 19 19 C 1.53006 * 109.47127 * 300.00449 * 18 17 16 20 20 C 1.52997 * 109.47164 * 59.99836 * 19 18 17 21 21 H 1.09001 * 109.47375 * 59.99966 * 20 19 18 22 22 C 1.50696 * 109.46910 * 180.02562 * 20 19 18 23 23 O 1.20831 * 120.00131 * 119.99917 * 22 20 19 24 24 O 1.34230 * 120.00181 * 299.99410 * 22 20 19 25 25 H 0.96998 * 119.99452 * 0.02562 * 1 2 3 26 26 H 1.08989 * 109.47458 * 60.00372 * 10 9 7 27 27 H 1.09004 * 109.47332 * 299.99464 * 10 9 7 28 28 H 1.09004 * 109.47368 * 300.00024 * 16 14 13 29 29 H 1.09001 * 109.47372 * 180.02562 * 16 14 13 30 30 H 1.09002 * 109.47398 * 180.02562 * 17 16 14 31 31 H 1.09001 * 109.47194 * 300.00476 * 17 16 14 32 32 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 33 33 H 1.08996 * 109.47853 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 35 35 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 36 36 H 0.96705 * 117.00464 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0021 12 8 6.3411 -2.2999 0.0025 13 8 6.0436 -4.4897 0.0016 14 6 7.4864 -4.6534 0.0022 15 1 7.9480 -3.8097 -0.5110 16 6 7.9925 -4.7117 1.4448 17 6 7.3446 -5.8959 2.1652 18 6 7.7108 -7.1943 1.4434 19 6 7.2048 -7.1359 0.0006 20 6 7.8527 -5.9518 -0.7196 21 1 8.9358 -6.0746 -0.7192 22 6 7.3538 -5.8940 -2.1404 23 8 6.7659 -4.9149 -2.5350 24 8 7.5625 -6.9303 -2.9677 25 1 -0.4849 0.8401 -0.0004 26 1 3.6440 -3.4314 -0.8892 27 1 3.6433 -3.4319 0.8907 28 1 7.7316 -3.7868 1.9592 29 1 9.0756 -4.8342 1.4453 30 1 7.7048 -5.9372 3.1931 31 1 6.2615 -5.7731 2.1647 32 1 8.7938 -7.3172 1.4438 33 1 7.2489 -8.0379 1.9562 34 1 6.1217 -7.0131 0.0002 35 1 7.4661 -8.0607 -0.5137 36 1 7.2237 -6.8472 -3.8697 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:04 Heat of formation + Delta-G solvation = -220.381289 kcal Electronic energy + Delta-G solvation = -21146.960464 eV Core-core repulsion = 17720.763205 eV Total energy + Delta-G solvation = -3426.197259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.16007 -41.04059 -39.00058 -37.14097 -36.75292 -34.71719 -32.42766 -31.98666 -30.71252 -27.92193 -25.52579 -24.05652 -22.79891 -22.17509 -20.46360 -19.91903 -19.02337 -18.51487 -18.06011 -17.43764 -17.20602 -16.94265 -16.75693 -15.99574 -15.78370 -15.29118 -14.98448 -14.82789 -14.39901 -14.28202 -13.74606 -13.54410 -13.46802 -13.39214 -13.05166 -13.04887 -12.76246 -12.59200 -12.32189 -12.26645 -11.91457 -11.70004 -11.60750 -11.44134 -11.20924 -11.15457 -11.05852 -10.66638 -9.09700 -8.55100 -6.28972 0.75802 1.11770 1.17739 1.29937 1.35524 1.47903 1.83814 2.01440 2.21910 2.62053 2.82918 3.28699 3.60798 3.71019 3.78671 4.04768 4.07934 4.11681 4.25776 4.32133 4.38094 4.40406 4.46909 4.69454 4.88318 4.94271 5.12105 5.17640 5.22348 5.32417 5.38734 5.52497 5.59543 5.67169 6.08035 6.67293 6.88668 6.94989 8.57520 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.004097 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.361196 B = 6832.093465 C = 7210.624666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.049 3.951 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.254 1.254 6 H -0.235 1.235 7 C -0.534 4.534 8 H 0.063 0.937 9 S -0.159 6.159 10 C -0.089 4.089 11 C 0.494 3.506 12 O -0.519 6.519 13 O -0.336 6.336 14 C 0.093 3.907 15 H 0.069 0.931 16 C -0.131 4.131 17 C -0.123 4.123 18 C -0.109 4.109 19 C -0.107 4.107 20 C -0.069 4.069 21 H 0.164 0.836 22 C 0.481 3.519 23 O -0.551 6.551 24 O -0.505 6.505 25 H 0.279 0.721 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.433 -18.534 1.092 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.157 4.157 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.178 1.178 6 H -0.159 1.159 7 C -0.681 4.681 8 H 0.081 0.919 9 S 0.067 5.933 10 C -0.238 4.238 11 C 0.336 3.664 12 O -0.408 6.408 13 O -0.252 6.252 14 C 0.038 3.962 15 H 0.088 0.912 16 C -0.168 4.168 17 C -0.160 4.160 18 C -0.146 4.146 19 C -0.144 4.144 20 C -0.088 4.088 21 H 0.182 0.818 22 C 0.324 3.676 23 O -0.442 6.442 24 O -0.318 6.318 25 H 0.088 0.912 26 H 0.131 0.869 27 H 0.143 0.857 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 21.231 -17.105 1.379 27.299 hybrid contribution -1.608 0.155 -0.970 1.884 sum 19.624 -16.951 0.409 25.934 Atomic orbital electron populations 1.70012 1.07306 1.29206 1.48634 1.25545 0.95284 1.02226 0.92603 0.85881 0.80751 0.79506 0.80324 1.18681 1.17848 1.15888 1.22409 0.89758 0.96958 1.59017 0.91882 1.84591 1.07134 1.03893 1.97648 1.22901 0.92002 1.00658 1.08202 1.22675 0.90881 0.81405 0.71407 1.90615 1.59237 1.44725 1.46209 1.86480 1.26837 1.28489 1.83433 1.22797 0.77260 0.97505 0.98662 0.91238 1.21991 1.02881 0.99905 0.92027 1.21559 1.00383 0.94150 0.99919 1.21534 1.02750 0.97141 0.93192 1.21544 1.00248 0.95793 0.96825 1.21385 1.05112 0.96248 0.86007 0.81842 1.23750 0.75246 0.79409 0.89191 1.90813 1.40290 1.35139 1.77917 1.84453 1.75233 1.43567 1.28583 0.91161 0.86924 0.85707 0.92760 0.86724 0.89859 0.93303 0.89030 0.89892 0.92529 0.88258 0.71224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.08 13.97 21.65 0.30 -55.78 16 2 C 0.05 2.92 5.50 84.86 0.47 3.39 16 3 Si 0.91 45.09 27.74 68.60 1.90 47.00 16 4 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.25 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.23 -11.50 6.74 99.48 0.67 -10.83 16 7 C -0.53 -31.77 10.04 67.96 0.68 -31.08 16 8 H 0.06 3.97 8.03 -2.91 -0.02 3.95 16 9 S -0.16 -8.29 18.55 -56.49 -1.05 -9.33 16 10 C -0.09 -3.77 6.27 71.24 0.45 -3.32 16 11 C 0.49 19.41 7.95 71.24 0.57 19.98 16 12 O -0.52 -22.99 15.08 21.97 0.33 -22.66 16 13 O -0.34 -10.62 7.45 -45.47 -0.34 -10.96 16 14 C 0.09 2.24 1.71 30.59 0.05 2.29 16 15 H 0.07 2.02 7.11 -2.38 -0.02 2.01 16 16 C -0.13 -2.40 5.65 30.59 0.17 -2.22 16 17 C -0.12 -1.86 5.78 30.59 0.18 -1.68 16 18 C -0.11 -1.08 5.92 30.60 0.18 -0.90 16 19 C -0.11 -1.41 4.99 30.60 0.15 -1.26 16 20 C -0.07 -1.14 2.47 -11.54 -0.03 -1.16 16 21 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 22 C 0.48 10.43 7.48 71.23 0.53 10.97 16 23 O -0.55 -17.92 16.04 27.89 0.45 -17.47 16 24 O -0.51 -7.24 13.33 -51.41 -0.69 -7.92 16 25 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 26 H 0.11 4.64 8.14 -2.40 -0.02 4.62 16 27 H 0.12 4.80 8.14 -2.39 -0.02 4.78 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.98 7.68 -2.39 -0.02 0.96 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 1.03 7.68 -2.39 -0.02 1.02 16 35 H 0.10 0.94 8.11 -2.39 -0.02 0.92 16 36 H 0.43 3.30 9.10 -74.05 -0.67 2.63 16 Total: -1.00 -78.60 318.02 4.70 -73.90 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.39 Total: 8.22 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 3.40 Total: -5.00 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.30 Total: -55.78 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -0.25 Total: -59.00 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.05 Total: -9.33 kcal Total: -78.60 4.70 -73.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.482 kcal (2) G-P(sol) polarization free energy of solvation -78.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds