Wall clock time and date at job start Tue Mar 31 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00598 * 2 1 4 4 H 1.48498 * 109.47369 * 240.00022 * 3 2 1 5 5 H 1.48505 * 109.47033 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47342 * 119.99795 * 3 2 1 7 7 C 1.38802 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00360 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47482 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99655 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00432 * 180.27682 * 11 10 9 14 14 C 1.45201 * 117.00137 * 179.71953 * 13 11 10 15 15 H 1.08993 * 109.47491 * 330.00073 * 14 13 11 16 16 C 1.52996 * 109.46934 * 90.00375 * 14 13 11 17 17 C 1.53000 * 109.47422 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46844 * 299.99863 * 17 16 14 19 19 C 1.52998 * 109.47171 * 59.99533 * 18 17 16 20 20 C 1.53000 * 109.47243 * 299.99990 * 19 18 17 21 21 H 1.08994 * 109.47085 * 299.99939 * 20 19 18 22 22 C 1.50696 * 109.47127 * 180.02562 * 20 19 18 23 23 O 1.20826 * 119.99999 * 240.00535 * 22 20 19 24 24 O 1.34224 * 120.00170 * 60.00029 * 22 20 19 25 25 H 0.96999 * 119.99316 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47402 * 59.99931 * 10 9 7 27 27 H 1.09006 * 109.47116 * 299.99821 * 10 9 7 28 28 H 1.09005 * 109.47320 * 299.99428 * 16 14 13 29 29 H 1.08999 * 109.47835 * 59.99944 * 16 14 13 30 30 H 1.08997 * 109.47302 * 59.98979 * 17 16 14 31 31 H 1.08996 * 109.47914 * 179.97438 * 17 16 14 32 32 H 1.08999 * 109.47273 * 179.97438 * 18 17 16 33 33 H 1.09008 * 109.46942 * 299.99516 * 18 17 16 34 34 H 1.08997 * 109.47348 * 60.00656 * 19 18 17 35 35 H 1.09003 * 109.46750 * 179.97438 * 19 18 17 36 36 H 0.96696 * 117.00557 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 3.1042 1.6962 -1.2125 5 1 1.2855 2.7464 0.0006 6 1 3.1042 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7952 -5.5015 -0.0011 13 8 2.8402 -6.3390 0.0043 14 6 2.2605 -7.6702 0.0097 15 1 1.2990 -7.6458 0.5224 16 6 2.0584 -8.1442 -1.4309 17 6 1.4469 -9.5467 -1.4254 18 6 2.3874 -10.5102 -0.6987 19 6 2.5896 -10.0362 0.7419 20 6 3.2010 -8.6337 0.7363 21 1 4.1626 -8.6587 0.2238 22 6 3.4007 -8.1671 2.1553 23 8 2.8473 -7.1665 2.5457 24 8 4.1933 -8.8631 2.9854 25 1 -0.4849 0.8401 -0.0004 26 1 3.1242 -3.7315 0.8894 27 1 3.1242 -3.7315 -0.8906 28 1 1.3880 -7.4581 -1.9486 29 1 3.0200 -8.1688 -1.9437 30 1 0.4854 -9.5218 -0.9128 31 1 1.3026 -9.8843 -2.4517 32 1 1.9516 -11.5093 -0.6943 33 1 3.3491 -10.5352 -1.2113 34 1 1.6280 -10.0113 1.2546 35 1 3.2592 -10.7229 1.2598 36 1 4.2903 -8.5250 3.8861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:08 Heat of formation + Delta-G solvation = -199.187809 kcal Electronic energy + Delta-G solvation = -20878.250572 eV Core-core repulsion = 17452.972332 eV Total energy + Delta-G solvation = -3425.278240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.99219 -39.75795 -37.99973 -36.23878 -35.64384 -32.44385 -31.67330 -30.73057 -29.14804 -25.52529 -24.65536 -23.26314 -21.47724 -20.65383 -20.17618 -18.11601 -17.87710 -17.28086 -16.97338 -15.96587 -15.76182 -15.64897 -14.81225 -14.59530 -14.27810 -14.21896 -13.95342 -13.51743 -13.28414 -12.82302 -12.68974 -12.60224 -12.18393 -11.77353 -11.59477 -11.44326 -11.28689 -11.06356 -11.03409 -11.01735 -10.80452 -10.66802 -10.56348 -10.13792 -9.86825 -9.85181 -9.06741 -8.30324 -6.54386 -6.23012 -3.94889 2.09697 2.66844 2.78582 2.82569 3.24467 3.25983 3.29701 3.55431 4.16669 4.19163 4.44086 4.47115 4.70634 4.79668 4.93106 4.99152 5.07182 5.12511 5.19863 5.23263 5.44010 5.51060 5.57329 5.65689 5.71427 5.81273 5.82740 5.86650 5.98534 6.08460 6.15837 6.36423 6.81415 7.59041 7.76633 8.29366 8.34385 9.22153 10.84521 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028459 B = 0.003665 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.637986 B = 7638.990820 C = 8234.050988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.921 3.079 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.075 0.925 9 S -0.057 6.057 10 C -0.127 4.127 11 C 0.487 3.513 12 O -0.488 6.488 13 O -0.352 6.352 14 C 0.103 3.897 15 H 0.094 0.906 16 C -0.135 4.135 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.109 4.109 20 C -0.074 4.074 21 H 0.119 0.881 22 C 0.478 3.522 23 O -0.494 6.494 24 O -0.519 6.519 25 H 0.270 0.730 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.279 -22.311 0.136 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.093 0.907 9 S 0.169 5.831 10 C -0.275 4.275 11 C 0.328 3.672 12 O -0.373 6.373 13 O -0.270 6.270 14 C 0.047 3.953 15 H 0.112 0.888 16 C -0.173 4.173 17 C -0.157 4.157 18 C -0.158 4.158 19 C -0.146 4.146 20 C -0.093 4.093 21 H 0.137 0.863 22 C 0.318 3.682 23 O -0.379 6.379 24 O -0.332 6.332 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.412 -22.352 -0.153 23.254 hybrid contribution 1.958 1.543 0.689 2.587 sum 8.371 -20.809 0.536 22.436 Atomic orbital electron populations 1.70010 1.05977 1.27664 1.46649 1.24995 0.95056 0.99054 0.94385 0.86183 0.79203 0.80993 0.78884 1.19852 1.20785 1.19869 1.22817 0.95001 0.91287 1.59323 0.90702 1.85383 1.04441 0.96407 1.96853 1.23273 1.06887 0.91108 1.06241 1.23144 0.85206 0.86966 0.71836 1.90636 1.16878 1.85421 1.44388 1.86518 1.41105 1.14754 1.84576 1.22401 0.97158 0.79123 0.96589 0.88837 1.21961 1.02594 0.97543 0.95182 1.21545 0.99141 0.93726 1.01308 1.21598 1.00489 0.99188 0.94493 1.21548 1.01818 0.92625 0.98635 1.21184 1.02634 0.96579 0.88884 0.86313 1.23300 0.75408 0.81140 0.88330 1.90823 1.45635 1.24753 1.76728 1.84488 1.64460 1.56642 1.27599 0.92064 0.88062 0.88139 0.90180 0.90600 0.91272 0.90856 0.90891 0.91187 0.90897 0.89623 0.73120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 3 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -15.50 9.50 30.94 0.29 -15.20 16 8 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.13 -2.78 6.27 36.00 0.23 -2.56 16 11 C 0.49 10.10 7.95 36.00 0.29 10.39 16 12 O -0.49 -11.32 15.08 -18.76 -0.28 -11.60 16 13 O -0.35 -6.03 8.79 -45.44 -0.40 -6.43 16 14 C 0.10 1.40 1.42 -26.73 -0.04 1.36 16 15 H 0.09 1.48 7.11 -51.93 -0.37 1.11 16 16 C -0.14 -1.48 5.56 -26.73 -0.15 -1.63 16 17 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 18 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 19 C -0.11 -0.81 5.14 -26.73 -0.14 -0.94 16 20 C -0.07 -0.76 2.38 -91.77 -0.22 -0.98 16 21 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 22 C 0.48 5.85 7.48 36.00 0.27 6.12 16 23 O -0.49 -8.37 16.04 -24.96 -0.40 -8.77 16 24 O -0.52 -4.57 13.33 -39.24 -0.52 -5.09 16 25 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.10 2.13 8.14 -51.92 -0.42 1.71 16 27 H 0.10 2.01 8.14 -51.91 -0.42 1.58 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.52 8.11 -51.93 -0.42 0.10 16 36 H 0.41 2.13 9.10 45.56 0.41 2.55 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -35.97 322.80 -7.27 -43.24 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.15 Total: 0.02 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 0.12 Total: -3.43 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.73 Total: -25.56 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.61 Total: -31.89 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.97 -7.27 -43.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.945 kcal (2) G-P(sol) polarization free energy of solvation -35.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds