Wall clock time and date at job start Tue Mar 31 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00598 * 2 1 4 4 H 1.48498 * 109.47369 * 240.00022 * 3 2 1 5 5 H 1.48505 * 109.47033 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47342 * 119.99795 * 3 2 1 7 7 C 1.38802 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00360 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47482 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99655 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00432 * 180.27682 * 11 10 9 14 14 C 1.45201 * 117.00137 * 179.71953 * 13 11 10 15 15 H 1.08993 * 109.47491 * 330.00073 * 14 13 11 16 16 C 1.52996 * 109.46934 * 90.00375 * 14 13 11 17 17 C 1.53000 * 109.47422 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46844 * 299.99863 * 17 16 14 19 19 C 1.52998 * 109.47171 * 59.99533 * 18 17 16 20 20 C 1.53000 * 109.47243 * 299.99990 * 19 18 17 21 21 H 1.08994 * 109.47085 * 299.99939 * 20 19 18 22 22 C 1.50696 * 109.47127 * 180.02562 * 20 19 18 23 23 O 1.20826 * 119.99999 * 240.00535 * 22 20 19 24 24 O 1.34224 * 120.00170 * 60.00029 * 22 20 19 25 25 H 0.96999 * 119.99316 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47402 * 59.99931 * 10 9 7 27 27 H 1.09006 * 109.47116 * 299.99821 * 10 9 7 28 28 H 1.09005 * 109.47320 * 299.99428 * 16 14 13 29 29 H 1.08999 * 109.47835 * 59.99944 * 16 14 13 30 30 H 1.08997 * 109.47302 * 59.98979 * 17 16 14 31 31 H 1.08996 * 109.47914 * 179.97438 * 17 16 14 32 32 H 1.08999 * 109.47273 * 179.97438 * 18 17 16 33 33 H 1.09008 * 109.46942 * 299.99516 * 18 17 16 34 34 H 1.08997 * 109.47348 * 60.00656 * 19 18 17 35 35 H 1.09003 * 109.46750 * 179.97438 * 19 18 17 36 36 H 0.96696 * 117.00557 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 3.1042 1.6962 -1.2125 5 1 1.2855 2.7464 0.0006 6 1 3.1042 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7952 -5.5015 -0.0011 13 8 2.8402 -6.3390 0.0043 14 6 2.2605 -7.6702 0.0097 15 1 1.2990 -7.6458 0.5224 16 6 2.0584 -8.1442 -1.4309 17 6 1.4469 -9.5467 -1.4254 18 6 2.3874 -10.5102 -0.6987 19 6 2.5896 -10.0362 0.7419 20 6 3.2010 -8.6337 0.7363 21 1 4.1626 -8.6587 0.2238 22 6 3.4007 -8.1671 2.1553 23 8 2.8473 -7.1665 2.5457 24 8 4.1933 -8.8631 2.9854 25 1 -0.4849 0.8401 -0.0004 26 1 3.1242 -3.7315 0.8894 27 1 3.1242 -3.7315 -0.8906 28 1 1.3880 -7.4581 -1.9486 29 1 3.0200 -8.1688 -1.9437 30 1 0.4854 -9.5218 -0.9128 31 1 1.3026 -9.8843 -2.4517 32 1 1.9516 -11.5093 -0.6943 33 1 3.3491 -10.5352 -1.2113 34 1 1.6280 -10.0113 1.2546 35 1 3.2592 -10.7229 1.2598 36 1 4.2903 -8.5250 3.8861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:07 Heat of formation + Delta-G solvation = -222.948816 kcal Electronic energy + Delta-G solvation = -20879.280927 eV Core-core repulsion = 17452.972332 eV Total energy + Delta-G solvation = -3426.308595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.11613 -41.06231 -38.99339 -37.22541 -36.97864 -34.63237 -32.46044 -31.95547 -30.52963 -27.73394 -25.54245 -24.22017 -22.45262 -21.91409 -21.01260 -19.89275 -19.04505 -18.75437 -18.06942 -17.31732 -17.14287 -16.91351 -16.70020 -16.12890 -15.47534 -15.15176 -14.87910 -14.64224 -14.55739 -14.28478 -14.00547 -13.66158 -13.51596 -13.21276 -12.88805 -12.71091 -12.63204 -12.53447 -12.37205 -12.19067 -11.88132 -11.77846 -11.71019 -11.49316 -11.32973 -11.16443 -11.07965 -10.42031 -8.76624 -8.38958 -6.19710 0.98189 1.13834 1.17160 1.39124 1.43723 1.52814 1.84535 1.98453 2.22632 2.95686 3.19798 3.30197 3.60682 3.69152 3.79540 4.04243 4.08823 4.12477 4.20484 4.29641 4.35344 4.37091 4.43838 4.70828 4.81947 4.90821 5.03256 5.10602 5.23256 5.26309 5.32826 5.38190 5.47143 5.57688 6.15867 6.69364 6.93714 7.01867 8.70397 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028459 B = 0.003665 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.637986 B = 7638.990820 C = 8234.050988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 1.002 2.998 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.552 4.552 8 H 0.085 0.915 9 S -0.136 6.136 10 C -0.107 4.107 11 C 0.493 3.507 12 O -0.521 6.521 13 O -0.345 6.345 14 C 0.094 3.906 15 H 0.063 0.937 16 C -0.132 4.132 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.103 4.103 20 C -0.070 4.070 21 H 0.145 0.855 22 C 0.481 3.519 23 O -0.552 6.552 24 O -0.503 6.503 25 H 0.273 0.727 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.901 -23.860 -0.314 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.823 3.177 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.699 4.699 8 H 0.103 0.897 9 S 0.091 5.909 10 C -0.256 4.256 11 C 0.336 3.664 12 O -0.409 6.409 13 O -0.262 6.262 14 C 0.039 3.961 15 H 0.081 0.919 16 C -0.169 4.169 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.141 4.141 20 C -0.089 4.089 21 H 0.163 0.837 22 C 0.325 3.675 23 O -0.442 6.442 24 O -0.317 6.317 25 H 0.082 0.918 26 H 0.129 0.871 27 H 0.141 0.859 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 9.073 -23.958 -0.592 25.625 hybrid contribution 1.187 1.847 0.877 2.364 sum 10.260 -22.111 0.285 24.377 Atomic orbital electron populations 1.70166 1.07983 1.28924 1.47536 1.26150 0.96012 1.03312 0.93373 0.84957 0.77804 0.75367 0.79586 1.18413 1.20111 1.18760 1.23170 0.95497 0.91587 1.59688 0.89712 1.85505 1.09207 0.99021 1.97150 1.23065 1.04294 0.90507 1.07722 1.22840 0.84876 0.87446 0.71270 1.90624 1.18279 1.85964 1.46082 1.86460 1.40289 1.15697 1.83735 1.22811 0.96838 0.77772 0.98678 0.91918 1.21981 1.03241 0.98710 0.92997 1.21574 0.98940 0.92296 1.02682 1.21606 1.00955 0.99329 0.93164 1.21617 1.01662 0.90857 0.99953 1.21325 1.03147 0.96903 0.87485 0.83726 1.23701 0.74440 0.80183 0.89224 1.90818 1.48048 1.27378 1.77930 1.84445 1.62985 1.55661 1.28573 0.91765 0.87115 0.85880 0.92993 0.88585 0.92513 0.89105 0.88745 0.89336 0.91889 0.87207 0.71169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.28 13.22 21.65 0.29 -56.00 16 2 C 0.02 0.96 5.49 84.86 0.47 1.42 16 3 Si 1.00 44.02 29.55 68.60 2.03 46.04 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.55 -32.25 9.50 67.95 0.65 -31.60 16 8 H 0.08 4.61 7.80 -2.91 -0.02 4.59 16 9 S -0.14 -7.80 20.57 -56.49 -1.16 -8.96 16 10 C -0.11 -4.77 6.27 71.23 0.45 -4.33 16 11 C 0.49 21.06 7.95 71.23 0.57 21.62 16 12 O -0.52 -25.47 15.08 21.94 0.33 -25.13 16 13 O -0.34 -11.87 8.79 -45.40 -0.40 -12.27 16 14 C 0.09 2.55 1.42 30.60 0.04 2.59 16 15 H 0.06 2.10 7.11 -2.39 -0.02 2.08 16 16 C -0.13 -2.78 5.56 30.59 0.17 -2.61 16 17 C -0.12 -1.68 5.92 30.60 0.18 -1.50 16 18 C -0.11 -1.00 5.92 30.60 0.18 -0.82 16 19 C -0.10 -1.24 5.14 30.59 0.16 -1.08 16 20 C -0.07 -1.30 2.38 -11.54 -0.03 -1.33 16 21 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 22 C 0.48 11.27 7.48 71.23 0.53 11.80 16 23 O -0.55 -19.05 16.04 27.90 0.45 -18.61 16 24 O -0.50 -7.68 13.33 -51.36 -0.68 -8.36 16 25 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 26 H 0.11 4.70 8.14 -2.40 -0.02 4.68 16 27 H 0.12 4.87 8.14 -2.39 -0.02 4.85 16 28 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 0.87 8.11 -2.39 -0.02 0.85 16 36 H 0.43 3.60 9.10 -74.06 -0.67 2.92 16 Total: -1.00 -81.53 322.80 4.63 -76.90 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.42 Total: 12.21 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 3.36 Total: -5.83 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.29 Total: -56.00 kcal Atomic # 8 Polarization: -64.06 SS G_CDS: -0.31 Total: -64.37 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -7.80 SS G_CDS: -1.16 Total: -8.96 kcal Total: -81.53 4.63 -76.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.050 kcal (2) G-P(sol) polarization free energy of solvation -81.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds