Wall clock time and date at job start Tue Mar 31 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 119.99958 * 2 1 4 4 H 1.48494 * 109.47626 * 270.00590 * 3 2 1 5 5 H 1.48503 * 109.47258 * 30.00495 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00299 * 3 2 1 7 7 C 1.38793 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00273 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00137 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47305 * 180.02562 * 10 9 7 12 12 O 1.20828 * 119.99519 * 359.97438 * 11 10 9 13 13 O 1.34223 * 120.00340 * 180.02562 * 11 10 9 14 14 C 1.45196 * 117.00192 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47276 * 29.99985 * 14 13 11 16 16 C 1.53002 * 109.47127 * 269.99538 * 14 13 11 17 17 C 1.52996 * 109.46972 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47131 * 60.00459 * 17 16 14 19 19 C 1.52999 * 109.46991 * 299.99311 * 18 17 16 20 20 C 1.52997 * 109.47152 * 149.99890 * 14 13 11 21 21 H 1.09001 * 109.47502 * 60.00355 * 20 14 13 22 22 C 1.50699 * 109.47078 * 299.99861 * 20 14 13 23 23 O 1.20827 * 120.00172 * 0.02562 * 22 20 14 24 24 O 1.34233 * 120.00015 * 180.02562 * 22 20 14 25 25 H 0.97007 * 119.99863 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47064 * 60.00374 * 10 9 7 27 27 H 1.09003 * 109.47358 * 299.99799 * 10 9 7 28 28 H 1.08996 * 109.47407 * 300.00367 * 16 14 13 29 29 H 1.09000 * 109.46986 * 60.00138 * 16 14 13 30 30 H 1.09001 * 109.46993 * 180.02562 * 17 16 14 31 31 H 1.09000 * 109.47380 * 299.99696 * 17 16 14 32 32 H 1.09002 * 109.47153 * 179.97438 * 18 17 16 33 33 H 1.08993 * 109.47194 * 60.00154 * 18 17 16 34 34 H 1.08993 * 109.47839 * 300.00447 * 19 18 17 35 35 H 1.09000 * 109.47160 * 180.02562 * 19 18 17 36 36 H 0.96700 * 116.99741 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7956 -5.5015 -0.0011 13 8 2.8406 -6.3389 -0.0008 14 6 2.2610 -7.6701 -0.0008 15 1 1.3002 -7.6481 -0.5150 16 6 2.0570 -8.1376 1.4416 17 6 1.4456 -9.5402 1.4415 18 6 2.3872 -10.5068 0.7205 19 6 2.5912 -10.0394 -0.7220 20 6 3.2030 -8.6365 -0.7217 21 1 4.1639 -8.6587 -0.2075 22 6 3.4040 -8.1761 -2.1424 23 8 2.8509 -7.1772 -2.5378 24 8 4.1975 -8.8756 -2.9688 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7313 0.8895 27 1 3.1245 -3.7313 -0.8905 28 1 3.0178 -8.1597 1.9558 29 1 1.3859 -7.4492 1.9552 30 1 1.2999 -9.8730 2.4692 31 1 0.4847 -9.5176 0.9276 32 1 1.9518 -11.5062 0.7208 33 1 3.3480 -10.5294 1.2346 34 1 1.6303 -10.0168 -1.2360 35 1 3.2616 -10.7284 -1.2358 36 1 4.2959 -8.5410 -3.8707 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:09 Heat of formation + Delta-G solvation = -223.018178 kcal Electronic energy + Delta-G solvation = -20878.878688 eV Core-core repulsion = 17452.567085 eV Total energy + Delta-G solvation = -3426.311603 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.11582 -41.06149 -38.99254 -37.22487 -36.97815 -34.63399 -32.45855 -31.95465 -30.52985 -27.73698 -25.54178 -24.22034 -22.45213 -21.91345 -21.01338 -19.89432 -19.04446 -18.75424 -18.06905 -17.31777 -17.14295 -16.91604 -16.69933 -16.12941 -15.47522 -15.15156 -14.87920 -14.64385 -14.55863 -14.28597 -14.00369 -13.66191 -13.51551 -13.20957 -12.91410 -12.69941 -12.62999 -12.53356 -12.37229 -12.19104 -11.87219 -11.76916 -11.70999 -11.49350 -11.32941 -11.18017 -11.07963 -10.41669 -8.76653 -8.39208 -6.19853 0.98438 1.13687 1.17172 1.39150 1.42134 1.54110 1.84525 1.98508 2.22276 2.95549 3.19792 3.30169 3.60605 3.69110 3.79531 4.04217 4.08849 4.12476 4.20449 4.29653 4.35328 4.37090 4.43843 4.70842 4.81949 4.90846 5.03275 5.10625 5.23223 5.26344 5.32848 5.38367 5.47199 5.57661 6.15961 6.69398 6.93695 7.01813 8.70369 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.003663 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.462094 B = 7641.564404 C = 8236.025691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 1.002 2.998 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.551 4.551 8 H 0.085 0.915 9 S -0.136 6.136 10 C -0.107 4.107 11 C 0.493 3.507 12 O -0.521 6.521 13 O -0.345 6.345 14 C 0.094 3.906 15 H 0.063 0.937 16 C -0.132 4.132 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.103 4.103 20 C -0.070 4.070 21 H 0.145 0.855 22 C 0.481 3.519 23 O -0.552 6.552 24 O -0.503 6.503 25 H 0.273 0.727 26 H 0.123 0.877 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.905 -23.868 0.365 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.823 3.177 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.698 4.698 8 H 0.103 0.897 9 S 0.091 5.909 10 C -0.256 4.256 11 C 0.336 3.664 12 O -0.409 6.409 13 O -0.262 6.262 14 C 0.039 3.961 15 H 0.081 0.919 16 C -0.169 4.169 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.141 4.141 20 C -0.089 4.089 21 H 0.163 0.837 22 C 0.325 3.675 23 O -0.442 6.442 24 O -0.317 6.317 25 H 0.082 0.918 26 H 0.141 0.859 27 H 0.129 0.871 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 9.081 -23.966 0.646 25.637 hybrid contribution 1.179 1.848 -0.889 2.366 sum 10.260 -22.118 -0.243 24.383 Atomic orbital electron populations 1.70172 1.07982 1.28857 1.47612 1.26147 0.96014 1.03316 0.93394 0.84902 0.78218 0.75684 0.78859 1.19310 1.19966 1.18104 1.23198 0.95490 0.91569 1.59564 0.89722 1.85508 1.09216 0.99043 1.97144 1.23066 1.04290 0.90505 1.07725 1.22841 0.84874 0.87447 0.71267 1.90622 1.18282 1.85961 1.46083 1.86460 1.40291 1.15697 1.83738 1.22813 0.96834 0.77766 0.98690 0.91914 1.21981 1.03233 0.98738 0.92978 1.21572 0.98937 0.92282 1.02698 1.21601 1.00945 0.99335 0.93175 1.21625 1.01658 0.90864 0.99929 1.21337 1.03122 0.96920 0.87488 0.83719 1.23704 0.74445 0.80120 0.89277 1.90818 1.48088 1.27480 1.77786 1.84450 1.62947 1.55634 1.28635 0.91770 0.85880 0.87114 0.88589 0.92998 0.89110 0.92510 0.88744 0.89342 0.91884 0.87209 0.71170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 2 C 0.02 0.94 5.49 84.86 0.47 1.41 16 3 Si 1.00 44.05 29.55 68.60 2.03 46.07 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.55 -32.17 9.50 67.95 0.65 -31.52 16 8 H 0.08 4.61 7.80 -2.91 -0.02 4.59 16 9 S -0.14 -7.81 20.58 -56.49 -1.16 -8.97 16 10 C -0.11 -4.77 6.27 71.24 0.45 -4.32 16 11 C 0.49 21.05 7.95 71.24 0.57 21.62 16 12 O -0.52 -25.46 15.08 21.96 0.33 -25.13 16 13 O -0.34 -11.87 8.79 -45.41 -0.40 -12.27 16 14 C 0.09 2.55 1.42 30.59 0.04 2.59 16 15 H 0.06 2.10 7.11 -2.39 -0.02 2.08 16 16 C -0.13 -2.78 5.56 30.59 0.17 -2.61 16 17 C -0.12 -1.68 5.92 30.59 0.18 -1.50 16 18 C -0.11 -1.00 5.92 30.59 0.18 -0.82 16 19 C -0.10 -1.24 5.14 30.61 0.16 -1.08 16 20 C -0.07 -1.30 2.38 -11.52 -0.03 -1.33 16 21 H 0.15 1.99 8.14 -2.39 -0.02 1.98 16 22 C 0.48 11.26 7.48 71.24 0.53 11.79 16 23 O -0.55 -19.03 16.04 27.90 0.45 -18.59 16 24 O -0.50 -7.67 13.33 -51.45 -0.69 -8.35 16 25 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 26 H 0.12 4.87 8.14 -2.39 -0.02 4.85 16 27 H 0.11 4.69 8.14 -2.39 -0.02 4.67 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 0.86 8.11 -2.39 -0.02 0.84 16 36 H 0.43 3.59 9.10 -74.06 -0.67 2.91 16 Total: -1.00 -81.53 322.80 4.63 -76.90 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.42 Total: 12.08 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 3.36 Total: -5.78 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.29 Total: -55.97 kcal Atomic # 8 Polarization: -64.03 SS G_CDS: -0.31 Total: -64.34 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -1.16 Total: -8.97 kcal Total: -81.53 4.63 -76.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.116 kcal (2) G-P(sol) polarization free energy of solvation -81.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds