Wall clock time and date at job start Tue Mar 31 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48499 * 109.47282 * 239.99621 * 3 2 1 5 5 H 1.48497 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47280 * 119.99995 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.20826 * 119.99939 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00046 * 179.97438 * 11 10 9 14 14 C 1.45192 * 117.00018 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47511 * 330.00359 * 14 13 11 16 16 C 1.53003 * 109.47147 * 90.00298 * 14 13 11 17 17 C 1.52999 * 109.47214 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47403 * 300.00074 * 17 16 14 19 19 C 1.53003 * 109.46996 * 59.99792 * 18 17 16 20 20 H 1.09003 * 109.46963 * 59.99950 * 19 18 17 21 21 C 1.50699 * 109.47061 * 180.02562 * 19 18 17 22 22 O 1.20828 * 119.99743 * 119.99891 * 21 19 18 23 23 O 1.34225 * 119.99929 * 300.00195 * 21 19 18 24 24 C 1.52999 * 109.47214 * 300.00324 * 19 18 17 25 25 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 27 27 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 28 28 H 1.08998 * 109.47227 * 299.99679 * 16 14 13 29 29 H 1.09003 * 109.46963 * 60.00194 * 16 14 13 30 30 H 1.08997 * 109.47398 * 179.97438 * 17 16 14 31 31 H 1.09000 * 109.47331 * 60.00130 * 17 16 14 32 32 H 1.09000 * 109.46922 * 300.00306 * 18 17 16 33 33 H 1.08998 * 109.47261 * 180.02562 * 18 17 16 34 34 H 0.96703 * 117.00277 * 179.97438 * 23 21 19 35 35 H 1.09000 * 109.47331 * 299.99870 * 24 19 18 36 36 H 1.09001 * 109.47042 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9871 -5.3028 0.0036 12 8 0.7953 -5.5015 0.0029 13 8 2.8403 -6.3390 0.0039 14 6 2.2606 -7.6702 0.0039 15 1 1.2994 -7.6480 0.5174 16 6 2.0573 -8.1380 -1.4386 17 6 1.4470 -9.5410 -1.4386 18 6 2.3890 -10.5070 -0.7172 19 6 2.5923 -10.0392 0.7253 20 1 1.6311 -10.0173 1.2390 21 6 3.5206 -10.9903 1.4358 22 8 4.5630 -10.5871 1.8949 23 8 3.1895 -12.2853 1.5584 24 6 3.2026 -8.6362 0.7253 25 1 -0.4850 0.8401 -0.0004 26 1 3.1242 -3.7307 0.8928 27 1 3.1243 -3.7322 -0.8872 28 1 1.3865 -7.4497 -1.9527 29 1 3.0185 -8.1603 -1.9522 30 1 1.3018 -9.8741 -2.4662 31 1 0.4859 -9.5192 -0.9249 32 1 3.3502 -10.5288 -1.2309 33 1 1.9545 -11.5066 -0.7176 34 1 3.8169 -12.8569 2.0217 35 1 4.1637 -8.6580 0.2117 36 1 3.3478 -8.3031 1.7530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:21 Heat of formation + Delta-G solvation = -202.024111 kcal Electronic energy + Delta-G solvation = -20257.323298 eV Core-core repulsion = 16831.922067 eV Total energy + Delta-G solvation = -3425.401232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00161 -40.15143 -38.04246 -36.46999 -35.78305 -32.48651 -31.57016 -30.83688 -29.20196 -25.56030 -24.92843 -23.09406 -21.78062 -20.64242 -20.19063 -18.39379 -17.93901 -17.48406 -16.79954 -16.18290 -15.90231 -15.55948 -15.05553 -14.84537 -14.37257 -14.18891 -13.98350 -13.60407 -13.29159 -12.91314 -12.76565 -12.64646 -12.24304 -11.93448 -11.75969 -11.43970 -11.19117 -11.12595 -11.09343 -11.05885 -10.92280 -10.82446 -10.66565 -10.16743 -9.96650 -9.90546 -9.10778 -8.36736 -6.60471 -6.27331 -3.99977 1.83960 2.41875 2.65608 2.80715 3.22067 3.24156 3.27518 3.51137 4.14894 4.23297 4.30160 4.43947 4.70606 4.73918 4.91646 4.97140 5.01957 5.08497 5.12731 5.22010 5.27266 5.44721 5.60906 5.65328 5.73335 5.77918 5.80035 5.86385 5.96944 6.06421 6.09413 6.13790 6.73105 7.52257 7.55167 8.17446 8.30185 9.18117 10.80120 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.040452 B = 0.002860 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.014571 B = 9788.441531 C =10150.395061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.076 0.924 9 S -0.058 6.058 10 C -0.129 4.129 11 C 0.479 3.521 12 O -0.487 6.487 13 O -0.354 6.354 14 C 0.091 3.909 15 H 0.088 0.912 16 C -0.140 4.140 17 C -0.113 4.113 18 C -0.113 4.113 19 C -0.076 4.076 20 H 0.115 0.885 21 C 0.485 3.515 22 O -0.510 6.510 23 O -0.516 6.516 24 C -0.102 4.102 25 H 0.270 0.730 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.410 0.590 35 H 0.085 0.915 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -23.027 -0.594 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.685 4.685 8 H 0.094 0.906 9 S 0.168 5.832 10 C -0.277 4.277 11 C 0.321 3.679 12 O -0.373 6.373 13 O -0.272 6.272 14 C 0.035 3.965 15 H 0.106 0.894 16 C -0.178 4.178 17 C -0.151 4.151 18 C -0.150 4.150 19 C -0.095 4.095 20 H 0.132 0.868 21 C 0.327 3.673 22 O -0.398 6.398 23 O -0.328 6.328 24 C -0.140 4.140 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.269 0.731 35 H 0.104 0.896 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.996 -22.840 -0.673 23.196 hybrid contribution 2.273 0.846 0.385 2.455 sum 6.269 -21.994 -0.288 22.871 Atomic orbital electron populations 1.70002 1.05988 1.27740 1.46545 1.25001 0.95069 0.99108 0.94326 0.86175 0.79202 0.80934 0.78920 1.19836 1.20781 1.19837 1.22809 0.95006 0.91192 1.59470 0.90632 1.85384 1.04375 0.96542 1.96892 1.23307 1.06969 0.90973 1.06488 1.23320 0.85273 0.87207 0.72121 1.90650 1.16879 1.85495 1.44269 1.86571 1.41103 1.14987 1.84528 1.22539 0.97566 0.79420 0.96949 0.89382 1.22006 1.02468 0.97218 0.96113 1.21473 0.98725 0.93590 1.01312 1.21603 1.01253 1.00010 0.92168 1.20971 0.98768 0.92212 0.97525 0.86751 1.23393 0.85791 0.81481 0.76673 1.90753 1.25509 1.77811 1.45700 1.84528 1.53701 1.21260 1.73275 1.21445 0.99376 0.90571 1.02611 0.92018 0.87916 0.87922 0.90487 0.90699 0.90479 0.90980 0.90985 0.90077 0.73117 0.89638 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.75 13.22 55.49 0.73 -25.01 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 8 H 0.08 2.01 7.80 -52.48 -0.41 1.60 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.13 -2.64 6.27 36.01 0.23 -2.42 16 11 C 0.48 9.11 7.95 36.01 0.29 9.40 16 12 O -0.49 -10.42 15.08 -18.75 -0.28 -10.71 16 13 O -0.35 -5.60 9.88 -39.26 -0.39 -5.99 16 14 C 0.09 1.13 2.45 -26.73 -0.07 1.07 16 15 H 0.09 1.17 7.16 -51.93 -0.37 0.80 16 16 C -0.14 -1.49 5.56 -26.73 -0.15 -1.64 16 17 C -0.11 -0.87 5.92 -26.73 -0.16 -1.03 16 18 C -0.11 -0.77 5.14 -26.73 -0.14 -0.91 16 19 C -0.08 -0.62 2.63 -91.77 -0.24 -0.86 16 20 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 21 C 0.48 4.33 7.63 36.01 0.27 4.61 16 22 O -0.51 -6.30 16.74 -18.75 -0.31 -6.62 16 23 O -0.52 -3.23 13.33 -39.25 -0.52 -3.76 16 24 C -0.10 -1.08 4.15 -26.73 -0.11 -1.19 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 27 H 0.10 1.94 8.14 -51.92 -0.42 1.52 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 34 H 0.41 0.95 9.10 45.56 0.41 1.37 16 35 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -34.31 324.20 -7.15 -41.45 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -4.15 Total: -0.90 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 0.12 Total: -5.74 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.73 Total: -25.01 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -1.51 Total: -27.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.31 -7.15 -41.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.570 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds