Wall clock time and date at job start Tue Mar 31 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48497 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00247 * 3 2 1 6 6 H 1.48501 * 109.47438 * 240.00367 * 3 2 1 7 7 C 1.38803 * 119.99752 * 180.28287 * 2 1 3 8 8 H 1.08002 * 119.99684 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99509 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46826 * 180.02562 * 10 9 7 12 12 O 1.20831 * 120.00117 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00143 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99891 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.47467 * 30.00004 * 14 13 11 16 16 C 1.52996 * 109.47365 * 269.99921 * 14 13 11 17 17 C 1.53000 * 109.47549 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47097 * 59.99677 * 17 16 14 19 19 C 1.52996 * 109.47185 * 300.00546 * 18 17 16 20 20 H 1.09004 * 109.46896 * 299.99646 * 19 18 17 21 21 C 1.50702 * 109.47127 * 180.02562 * 19 18 17 22 22 O 1.20821 * 120.00139 * 239.99772 * 21 19 18 23 23 O 1.34228 * 119.99797 * 59.99697 * 21 19 18 24 24 C 1.52999 * 109.46905 * 149.99828 * 14 13 11 25 25 H 0.97005 * 119.99723 * 359.71791 * 1 2 3 26 26 H 1.09000 * 109.47091 * 299.99657 * 10 9 7 27 27 H 1.09001 * 109.47322 * 60.00130 * 10 9 7 28 28 H 1.09004 * 109.46896 * 300.00433 * 16 14 13 29 29 H 1.09002 * 109.47431 * 60.00021 * 16 14 13 30 30 H 1.09004 * 109.46575 * 299.99862 * 17 16 14 31 31 H 1.08994 * 109.47094 * 179.97438 * 17 16 14 32 32 H 1.08997 * 109.46799 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.46914 * 60.00180 * 18 17 16 34 34 H 0.96704 * 116.99795 * 180.02562 * 23 21 19 35 35 H 1.08994 * 109.47364 * 299.99756 * 24 14 13 36 36 H 1.09004 * 109.47257 * 60.00260 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 1.2855 2.7464 0.0006 5 1 3.1042 1.6962 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0064 9 16 1.1292 -2.7280 -0.0128 10 6 2.5158 -3.8914 -0.0180 11 6 1.9872 -5.3027 -0.0250 12 8 0.7954 -5.5015 -0.0258 13 8 2.8405 -6.3389 -0.0292 14 6 2.2607 -7.6701 -0.0353 15 1 1.2999 -7.6457 -0.5494 16 6 2.0566 -8.1441 1.4050 17 6 1.4463 -9.5471 1.3987 18 6 2.3887 -10.5099 0.6737 19 6 2.5929 -10.0360 -0.7666 20 1 1.6320 -10.0119 -1.2808 21 6 3.5206 -10.9847 -1.4810 22 8 4.5634 -10.5804 -1.9380 23 8 3.1884 -12.2789 -1.6094 24 6 3.2027 -8.6333 -0.7605 25 1 -0.4850 0.8401 0.0041 26 1 3.1243 -3.7274 -0.9073 27 1 3.1244 -3.7354 0.8727 28 1 3.0175 -8.1685 1.9191 29 1 1.3855 -7.4579 1.9217 30 1 0.4855 -9.5229 0.8845 31 1 1.3013 -9.8848 2.4248 32 1 1.9537 -11.5093 0.6688 33 1 3.3495 -10.5340 1.1879 34 1 3.8156 -12.8489 -2.0750 35 1 3.3481 -8.2957 -1.7866 36 1 4.1636 -8.6578 -0.2464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:22 Heat of formation + Delta-G solvation = -202.020737 kcal Electronic energy + Delta-G solvation = -20257.163728 eV Core-core repulsion = 16831.762643 eV Total energy + Delta-G solvation = -3425.401085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00286 -40.15103 -38.04400 -36.47038 -35.78290 -32.48497 -31.57206 -30.83757 -29.20259 -25.56040 -24.92862 -23.09457 -21.78044 -20.64271 -20.18947 -18.39402 -17.93888 -17.48416 -16.79938 -16.18331 -15.90206 -15.55994 -15.05637 -14.84507 -14.37336 -14.18920 -13.98410 -13.60464 -13.29304 -12.91309 -12.76526 -12.64617 -12.24370 -11.93477 -11.75944 -11.43971 -11.19152 -11.12608 -11.09347 -11.05878 -10.92308 -10.82426 -10.66498 -10.16742 -9.96674 -9.90531 -9.10729 -8.36789 -6.60454 -6.27337 -4.00018 1.83983 2.41800 2.65549 2.80690 3.22065 3.24145 3.27513 3.51112 4.14875 4.23364 4.30211 4.43892 4.70607 4.73907 4.91625 4.97154 5.01997 5.08460 5.12723 5.21999 5.27276 5.44688 5.60854 5.65299 5.73337 5.77882 5.80042 5.86343 5.96919 6.06402 6.09388 6.13777 6.73063 7.52236 7.55182 8.17401 8.30207 9.18107 10.80110 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.040441 B = 0.002860 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.206964 B = 9788.381805 C =10151.052719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.282 1.282 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.076 0.924 9 S -0.058 6.058 10 C -0.129 4.129 11 C 0.479 3.521 12 O -0.488 6.488 13 O -0.354 6.354 14 C 0.091 3.909 15 H 0.088 0.912 16 C -0.140 4.140 17 C -0.113 4.113 18 C -0.113 4.113 19 C -0.076 4.076 20 H 0.114 0.886 21 C 0.485 3.515 22 O -0.510 6.510 23 O -0.516 6.516 24 C -0.102 4.102 25 H 0.270 0.730 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.410 0.590 35 H 0.083 0.917 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -23.028 0.500 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.685 4.685 8 H 0.094 0.906 9 S 0.168 5.832 10 C -0.277 4.277 11 C 0.321 3.679 12 O -0.373 6.373 13 O -0.272 6.272 14 C 0.035 3.965 15 H 0.106 0.894 16 C -0.178 4.178 17 C -0.151 4.151 18 C -0.150 4.150 19 C -0.095 4.095 20 H 0.132 0.868 21 C 0.327 3.673 22 O -0.398 6.398 23 O -0.328 6.328 24 C -0.140 4.140 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.269 0.731 35 H 0.101 0.899 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.995 -22.842 0.576 23.196 hybrid contribution 2.273 0.847 -0.382 2.455 sum 6.268 -21.994 0.195 22.871 Atomic orbital electron populations 1.70004 1.05983 1.27741 1.46554 1.25004 0.95068 0.99105 0.94326 0.86176 0.79205 0.80939 0.78922 1.20777 1.19844 1.19825 1.22810 0.95005 0.91191 1.59459 0.90630 1.85387 1.04373 0.96547 1.96890 1.23306 1.06968 0.90970 1.06487 1.23324 0.85274 0.87206 0.72121 1.90652 1.16878 1.85496 1.44269 1.86572 1.41101 1.14986 1.84528 1.22536 0.97562 0.79421 0.96951 0.89384 1.22005 1.02468 0.97198 0.96136 1.21474 0.98724 0.93607 1.01293 1.21604 1.01249 0.99998 0.92186 1.20962 0.98772 0.92245 0.97500 0.86763 1.23392 0.85787 0.81454 0.76705 1.90751 1.25475 1.77693 1.45850 1.84529 1.53688 1.21391 1.73157 1.21435 0.99383 0.90601 1.02586 0.92018 0.87922 0.87915 0.90700 0.90487 0.90973 0.90477 0.90077 0.90978 0.73117 0.89877 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.06 -1.55 20.58 -107.50 -2.21 -3.76 16 10 C -0.13 -2.64 6.27 36.01 0.23 -2.42 16 11 C 0.48 9.11 7.95 36.01 0.29 9.40 16 12 O -0.49 -10.42 15.08 -18.75 -0.28 -10.71 16 13 O -0.35 -5.60 9.88 -39.26 -0.39 -5.99 16 14 C 0.09 1.13 2.45 -26.73 -0.07 1.07 16 15 H 0.09 1.17 7.16 -51.93 -0.37 0.80 16 16 C -0.14 -1.50 5.56 -26.73 -0.15 -1.64 16 17 C -0.11 -0.87 5.92 -26.73 -0.16 -1.03 16 18 C -0.11 -0.77 5.14 -26.73 -0.14 -0.91 16 19 C -0.08 -0.62 2.63 -91.80 -0.24 -0.86 16 20 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 21 C 0.48 4.33 7.63 36.01 0.27 4.61 16 22 O -0.51 -6.30 16.74 -18.75 -0.31 -6.62 16 23 O -0.52 -3.23 13.33 -39.25 -0.52 -3.76 16 24 C -0.10 -1.08 4.15 -26.75 -0.11 -1.19 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.10 1.96 8.14 -51.92 -0.42 1.53 16 27 H 0.10 1.94 8.14 -51.92 -0.42 1.52 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.41 0.95 9.10 45.56 0.41 1.37 16 35 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -34.31 324.21 -7.15 -41.45 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -4.15 Total: -0.90 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 0.12 Total: -5.74 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.73 Total: -25.02 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -1.51 Total: -27.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.31 -7.15 -41.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.568 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds