Wall clock time and date at job start Tue Mar 31 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48507 * 109.46950 * 269.99435 * 3 2 1 5 5 H 1.48494 * 109.47537 * 29.99905 * 3 2 1 6 6 H 1.48503 * 109.46707 * 150.00178 * 3 2 1 7 7 C 1.38800 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99921 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99769 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47145 * 180.02562 * 10 9 7 12 12 O 1.20827 * 119.99878 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00029 * 180.02562 * 11 10 9 14 14 C 1.45199 * 117.00043 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46984 * 329.99431 * 14 13 11 16 16 C 1.53002 * 109.47438 * 89.99374 * 14 13 11 17 17 C 1.52997 * 109.46817 * 60.00050 * 16 14 13 18 18 C 1.53006 * 109.47127 * 60.00361 * 17 16 14 19 19 C 1.52999 * 109.46626 * 299.99539 * 18 17 16 20 20 H 1.08993 * 109.47839 * 299.99931 * 19 18 17 21 21 C 1.50706 * 109.46957 * 180.02562 * 19 18 17 22 22 O 1.20822 * 119.99850 * 240.00743 * 21 19 18 23 23 O 1.34225 * 119.99805 * 59.99745 * 21 19 18 24 24 C 1.52996 * 109.47298 * 209.99491 * 14 13 11 25 25 H 0.97007 * 119.99895 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47491 * 60.00018 * 10 9 7 27 27 H 1.09005 * 109.47378 * 299.99774 * 10 9 7 28 28 H 1.09002 * 109.47070 * 300.00230 * 16 14 13 29 29 H 1.08996 * 109.47407 * 179.97438 * 16 14 13 30 30 H 1.09001 * 109.47502 * 300.00518 * 17 16 14 31 31 H 1.09001 * 109.47289 * 180.02562 * 17 16 14 32 32 H 1.08993 * 109.46955 * 60.00011 * 18 17 16 33 33 H 1.09000 * 109.47050 * 179.97438 * 18 17 16 34 34 H 0.96705 * 117.00092 * 179.97438 * 23 21 19 35 35 H 1.09001 * 109.46993 * 60.00187 * 24 14 13 36 36 H 1.09000 * 109.47380 * 179.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7955 -5.5015 0.0000 13 8 2.8406 -6.3388 0.0003 14 6 2.2610 -7.6701 0.0002 15 1 1.2998 -7.6479 0.5138 16 6 2.0577 -8.1379 -1.4423 17 6 3.4069 -8.1690 -2.1631 18 6 4.3485 -9.1354 -1.4415 19 6 4.5517 -8.6675 0.0009 20 1 4.9868 -7.6682 0.0010 21 6 5.4796 -9.6189 0.7116 22 8 5.1007 -10.2117 1.6938 23 8 6.7269 -9.8078 0.2531 24 6 3.2025 -8.6364 0.7218 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7313 0.8905 27 1 3.1244 -3.7313 -0.8895 28 1 1.3869 -7.4495 -1.9564 29 1 1.6231 -9.1374 -1.4423 30 1 3.8421 -7.1697 -2.1631 31 1 3.2621 -8.5018 -3.1909 32 1 3.9134 -10.1347 -1.4416 33 1 5.3095 -9.1579 -1.9554 34 1 7.2854 -10.4274 0.7424 35 1 3.3473 -8.3032 1.7495 36 1 2.7672 -9.6357 0.7221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:24 Heat of formation + Delta-G solvation = -201.457942 kcal Electronic energy + Delta-G solvation = -20565.133848 eV Core-core repulsion = 17139.757167 eV Total energy + Delta-G solvation = -3425.376681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.98246 -40.14151 -37.95637 -36.39564 -35.52222 -32.49698 -31.48719 -30.90295 -29.28604 -25.57307 -24.85310 -22.99531 -21.86244 -21.15567 -19.37529 -18.34839 -17.96710 -17.16937 -16.93520 -16.26117 -15.86499 -15.57308 -15.11260 -14.85705 -14.24875 -14.21741 -13.86381 -13.32685 -13.12810 -12.93644 -12.79389 -12.51249 -12.26122 -11.95286 -11.83310 -11.68747 -11.20487 -11.11556 -11.08199 -10.94139 -10.82540 -10.75892 -10.42623 -10.15646 -9.96338 -9.90684 -9.12622 -8.37073 -6.61441 -6.28461 -4.01126 1.92999 2.63619 2.65025 2.74848 3.19695 3.23219 3.27844 3.50914 4.13783 4.25442 4.41001 4.53823 4.77332 4.83574 4.96390 5.06650 5.07590 5.11812 5.15538 5.33792 5.34961 5.45116 5.68488 5.70114 5.76148 5.77497 5.79852 5.93829 6.02478 6.06589 6.13332 6.22199 6.71144 7.54225 7.60726 8.17353 8.29146 9.17140 10.79013 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028080 B = 0.003260 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.920371 B = 8587.200566 C = 8991.391828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.076 0.924 9 S -0.059 6.059 10 C -0.129 4.129 11 C 0.479 3.521 12 O -0.487 6.487 13 O -0.354 6.354 14 C 0.089 3.911 15 H 0.093 0.907 16 C -0.139 4.139 17 C -0.117 4.117 18 C -0.108 4.108 19 C -0.079 4.079 20 H 0.121 0.879 21 C 0.484 3.516 22 O -0.517 6.517 23 O -0.515 6.515 24 C -0.098 4.098 25 H 0.269 0.731 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.408 0.592 35 H 0.082 0.918 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.971 -19.129 -2.567 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.684 4.684 8 H 0.094 0.906 9 S 0.168 5.832 10 C -0.277 4.277 11 C 0.320 3.680 12 O -0.373 6.373 13 O -0.273 6.273 14 C 0.034 3.966 15 H 0.111 0.889 16 C -0.177 4.177 17 C -0.154 4.154 18 C -0.146 4.146 19 C -0.098 4.098 20 H 0.139 0.861 21 C 0.326 3.674 22 O -0.405 6.405 23 O -0.327 6.327 24 C -0.136 4.136 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.267 0.733 35 H 0.101 0.899 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.960 -19.206 -2.510 21.342 hybrid contribution 2.191 0.792 0.405 2.365 sum 11.151 -18.414 -2.105 21.630 Atomic orbital electron populations 1.70011 1.05993 1.27638 1.46590 1.25002 0.95060 0.99114 0.94327 0.86125 0.79420 0.81293 0.78423 1.20185 1.20712 1.19579 1.22842 0.95014 0.91194 1.59395 0.90606 1.85417 1.04377 0.96570 1.96877 1.23296 1.06944 0.91094 1.06372 1.23297 0.85309 0.87225 0.72168 1.90657 1.16932 1.85502 1.44185 1.86556 1.41097 1.15076 1.84548 1.22635 0.97658 0.79338 0.96994 0.88942 1.21999 0.98275 1.02423 0.94977 1.21488 0.94766 1.00374 0.98781 1.21534 1.01050 0.99524 0.92463 1.21072 0.93674 0.98989 0.96021 0.86116 1.23641 0.80827 0.80673 0.82227 1.90721 1.76177 1.47238 1.26389 1.84555 1.25659 1.63540 1.58944 1.21572 0.92825 0.99533 0.99635 0.92067 0.88011 0.87995 0.90522 0.90229 0.90610 0.91121 0.91480 0.90351 0.73337 0.89932 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.54 -14.91 9.50 30.94 0.29 -14.61 16 8 H 0.08 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.54 20.58 -107.50 -2.21 -3.76 16 10 C -0.13 -2.56 6.27 36.01 0.23 -2.33 16 11 C 0.48 8.78 7.95 36.01 0.29 9.06 16 12 O -0.49 -10.30 15.08 -18.75 -0.28 -10.58 16 13 O -0.35 -5.17 8.54 -39.25 -0.34 -5.50 16 14 C 0.09 1.07 2.75 -26.73 -0.07 1.00 16 15 H 0.09 1.23 7.16 -51.93 -0.37 0.86 16 16 C -0.14 -1.44 5.65 -26.73 -0.15 -1.59 16 17 C -0.12 -1.03 5.78 -26.73 -0.15 -1.19 16 18 C -0.11 -0.84 5.14 -26.73 -0.14 -0.98 16 19 C -0.08 -0.73 2.48 -91.77 -0.23 -0.95 16 20 H 0.12 1.16 7.68 -51.93 -0.40 0.76 16 21 C 0.48 4.70 7.63 36.01 0.27 4.97 16 22 O -0.52 -6.52 16.74 -18.75 -0.31 -6.83 16 23 O -0.52 -3.75 13.33 -39.24 -0.52 -4.28 16 24 C -0.10 -1.00 4.24 -26.73 -0.11 -1.12 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.10 1.88 8.14 -51.92 -0.42 1.46 16 27 H 0.10 1.86 8.14 -51.91 -0.42 1.44 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.76 7.68 -51.93 -0.40 0.36 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 34 H 0.41 1.30 9.10 45.56 0.41 1.71 16 35 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 322.12 15.07 4.85 4.85 Total: -1.00 -33.78 322.12 -7.07 -40.85 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.10 Total: -0.10 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 0.13 Total: -5.75 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.73 Total: -24.87 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -1.45 Total: -27.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.78 -7.07 -40.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.606 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds