Wall clock time and date at job start Tue Mar 31 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48507 * 109.46950 * 269.99435 * 3 2 1 5 5 H 1.48494 * 109.47537 * 29.99905 * 3 2 1 6 6 H 1.48503 * 109.46707 * 150.00178 * 3 2 1 7 7 C 1.38800 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99921 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99769 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47145 * 180.02562 * 10 9 7 12 12 O 1.20827 * 119.99878 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00029 * 180.02562 * 11 10 9 14 14 C 1.45199 * 117.00043 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46984 * 329.99431 * 14 13 11 16 16 C 1.53002 * 109.47438 * 89.99374 * 14 13 11 17 17 C 1.52997 * 109.46817 * 60.00050 * 16 14 13 18 18 C 1.53006 * 109.47127 * 60.00361 * 17 16 14 19 19 C 1.52999 * 109.46626 * 299.99539 * 18 17 16 20 20 H 1.08993 * 109.47839 * 299.99931 * 19 18 17 21 21 C 1.50706 * 109.46957 * 180.02562 * 19 18 17 22 22 O 1.20822 * 119.99850 * 240.00743 * 21 19 18 23 23 O 1.34225 * 119.99805 * 59.99745 * 21 19 18 24 24 C 1.52996 * 109.47298 * 209.99491 * 14 13 11 25 25 H 0.97007 * 119.99895 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47491 * 60.00018 * 10 9 7 27 27 H 1.09005 * 109.47378 * 299.99774 * 10 9 7 28 28 H 1.09002 * 109.47070 * 300.00230 * 16 14 13 29 29 H 1.08996 * 109.47407 * 179.97438 * 16 14 13 30 30 H 1.09001 * 109.47502 * 300.00518 * 17 16 14 31 31 H 1.09001 * 109.47289 * 180.02562 * 17 16 14 32 32 H 1.08993 * 109.46955 * 60.00011 * 18 17 16 33 33 H 1.09000 * 109.47050 * 179.97438 * 18 17 16 34 34 H 0.96705 * 117.00092 * 179.97438 * 23 21 19 35 35 H 1.09001 * 109.46993 * 60.00187 * 24 14 13 36 36 H 1.09000 * 109.47380 * 179.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7955 -5.5015 0.0000 13 8 2.8406 -6.3388 0.0003 14 6 2.2610 -7.6701 0.0002 15 1 1.2998 -7.6479 0.5138 16 6 2.0577 -8.1379 -1.4423 17 6 3.4069 -8.1690 -2.1631 18 6 4.3485 -9.1354 -1.4415 19 6 4.5517 -8.6675 0.0009 20 1 4.9868 -7.6682 0.0010 21 6 5.4796 -9.6189 0.7116 22 8 5.1007 -10.2117 1.6938 23 8 6.7269 -9.8078 0.2531 24 6 3.2025 -8.6364 0.7218 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7313 0.8905 27 1 3.1244 -3.7313 -0.8895 28 1 1.3869 -7.4495 -1.9564 29 1 1.6231 -9.1374 -1.4423 30 1 3.8421 -7.1697 -2.1631 31 1 3.2621 -8.5018 -3.1909 32 1 3.9134 -10.1347 -1.4416 33 1 5.3095 -9.1579 -1.9554 34 1 7.2854 -10.4274 0.7424 35 1 3.3473 -8.3032 1.7495 36 1 2.7672 -9.6357 0.7221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:23 Heat of formation + Delta-G solvation = -222.866834 kcal Electronic energy + Delta-G solvation = -20566.062207 eV Core-core repulsion = 17139.757167 eV Total energy + Delta-G solvation = -3426.305040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.95345 -41.23575 -38.99042 -37.12899 -36.72731 -34.60456 -32.31878 -31.95931 -30.65480 -27.70152 -25.61566 -23.94787 -22.93226 -22.00883 -20.44642 -19.86326 -19.05183 -18.48713 -17.89347 -17.42995 -16.91863 -16.84855 -16.78947 -16.03319 -15.91474 -15.23308 -14.72431 -14.59662 -14.44270 -14.17760 -13.69963 -13.56874 -13.45105 -13.19406 -12.89867 -12.89253 -12.67080 -12.61127 -12.53745 -12.06216 -11.88648 -11.77623 -11.54934 -11.51993 -11.22832 -11.15394 -11.01632 -10.36407 -8.72443 -8.36845 -6.16290 1.04907 1.17276 1.19237 1.42024 1.43753 1.55832 1.91768 2.09580 2.24669 2.98338 3.27203 3.46617 3.63173 3.74357 3.81153 3.99928 4.03059 4.19339 4.26788 4.36386 4.38026 4.46358 4.58079 4.61755 4.85563 4.90661 5.00277 5.05973 5.17536 5.23294 5.36920 5.41792 5.43716 5.62235 6.18724 6.74245 7.00028 7.05078 8.72344 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028080 B = 0.003260 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.920371 B = 8587.200566 C = 8991.391828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.086 0.914 9 S -0.139 6.139 10 C -0.109 4.109 11 C 0.488 3.512 12 O -0.521 6.521 13 O -0.341 6.341 14 C 0.084 3.916 15 H 0.077 0.923 16 C -0.138 4.138 17 C -0.114 4.114 18 C -0.101 4.101 19 C -0.079 4.079 20 H 0.118 0.882 21 C 0.492 3.508 22 O -0.551 6.551 23 O -0.509 6.509 24 C -0.092 4.092 25 H 0.272 0.728 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.427 0.573 35 H 0.071 0.929 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.370 -19.870 -3.210 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.696 4.696 8 H 0.104 0.896 9 S 0.088 5.912 10 C -0.257 4.257 11 C 0.331 3.669 12 O -0.409 6.409 13 O -0.259 6.259 14 C 0.029 3.971 15 H 0.095 0.905 16 C -0.175 4.175 17 C -0.151 4.151 18 C -0.138 4.138 19 C -0.098 4.098 20 H 0.136 0.864 21 C 0.336 3.664 22 O -0.441 6.441 23 O -0.322 6.322 24 C -0.129 4.129 25 H 0.081 0.919 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.289 0.711 35 H 0.089 0.911 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.407 -19.978 -3.162 23.221 hybrid contribution 1.515 0.857 0.603 1.842 sum 12.921 -19.121 -2.559 23.219 Atomic orbital electron populations 1.70165 1.07942 1.28764 1.47774 1.26109 0.95961 1.03263 0.93558 0.84944 0.78203 0.75933 0.78861 1.19207 1.20345 1.18203 1.23197 0.95509 0.91628 1.59242 0.89609 1.85531 1.09383 0.99098 1.97159 1.23085 1.04145 0.90353 1.08148 1.22937 0.84909 0.87548 0.71537 1.90654 1.18353 1.85982 1.45895 1.86523 1.40047 1.15577 1.83711 1.22934 0.97501 0.78047 0.98597 0.90492 1.22019 0.99105 1.02985 0.93399 1.21477 0.93787 1.00134 0.99704 1.21511 1.01522 0.99634 0.91124 1.21060 0.92943 0.98976 0.96853 0.86404 1.23570 0.81341 0.79981 0.81463 1.90720 1.76952 1.48658 1.27819 1.84505 1.24854 1.63945 1.58919 1.21518 0.93269 0.99339 0.98809 0.91872 0.86292 0.85980 0.92725 0.87884 0.91944 0.89401 0.90199 0.88990 0.71111 0.91056 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.70 13.22 21.65 0.29 -54.41 16 2 C 0.02 0.90 5.49 84.86 0.47 1.37 16 3 Si 1.00 42.68 29.55 68.60 2.03 44.70 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.55 -30.53 9.50 67.95 0.65 -29.88 16 8 H 0.09 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.14 -7.45 20.58 -56.49 -1.16 -8.61 16 10 C -0.11 -4.26 6.27 71.24 0.45 -3.82 16 11 C 0.49 17.90 7.95 71.24 0.57 18.47 16 12 O -0.52 -22.55 15.08 21.96 0.33 -22.22 16 13 O -0.34 -9.70 8.54 -51.40 -0.44 -10.14 16 14 C 0.08 1.96 2.75 30.59 0.08 2.05 16 15 H 0.08 2.07 7.16 -2.39 -0.02 2.05 16 16 C -0.14 -2.66 5.65 30.59 0.17 -2.49 16 17 C -0.11 -1.75 5.78 30.60 0.18 -1.58 16 18 C -0.10 -1.26 5.14 30.60 0.16 -1.11 16 19 C -0.08 -1.29 2.48 -11.54 -0.03 -1.32 16 20 H 0.12 2.02 7.68 -2.39 -0.02 2.00 16 21 C 0.49 8.49 7.63 71.24 0.54 9.04 16 22 O -0.55 -13.05 16.74 21.98 0.37 -12.68 16 23 O -0.51 -5.98 13.33 -51.37 -0.68 -6.66 16 24 C -0.09 -1.75 4.24 30.59 0.13 -1.62 16 25 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 26 H 0.12 4.26 8.14 -2.40 -0.02 4.24 16 27 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.14 7.68 -2.39 -0.02 1.12 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 0.97 8.11 -2.39 -0.02 0.95 16 34 H 0.43 1.53 9.10 -74.05 -0.67 0.86 16 35 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 36 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -73.99 322.12 4.51 -69.48 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.42 Total: 11.45 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 3.36 Total: -10.90 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.29 Total: -54.41 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -0.42 Total: -51.71 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -1.16 Total: -8.61 kcal Total: -73.99 4.51 -69.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.384 kcal (2) G-P(sol) polarization free energy of solvation -73.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds