Wall clock time and date at job start Tue Mar 31 2020 05:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99797 * 2 1 4 4 H 1.48506 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00141 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00134 * 3 2 1 7 7 C 1.38802 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00072 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99767 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46925 * 179.97438 * 10 9 7 12 12 O 1.20821 * 120.00016 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99980 * 179.97438 * 11 10 9 14 14 C 1.45194 * 117.00015 * 180.02562 * 13 11 10 15 15 H 1.08995 * 109.47475 * 30.00343 * 14 13 11 16 16 C 1.53002 * 109.47028 * 269.99878 * 14 13 11 17 17 C 1.52995 * 109.47524 * 300.00212 * 16 14 13 18 18 C 1.53002 * 109.47156 * 300.00107 * 17 16 14 19 19 C 1.53003 * 109.47271 * 59.99829 * 18 17 16 20 20 H 1.09000 * 109.47150 * 60.00065 * 19 18 17 21 21 C 1.50694 * 109.47076 * 180.02562 * 19 18 17 22 22 O 1.20831 * 120.00155 * 120.00454 * 21 19 18 23 23 O 1.34230 * 120.00418 * 299.99338 * 21 19 18 24 24 C 1.53002 * 109.46891 * 150.00237 * 14 13 11 25 25 H 0.97004 * 120.00251 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46771 * 300.00145 * 10 9 7 27 27 H 1.09000 * 109.46686 * 60.00520 * 10 9 7 28 28 H 1.09001 * 109.46752 * 60.00293 * 16 14 13 29 29 H 1.09000 * 109.47076 * 180.02562 * 16 14 13 30 30 H 1.09002 * 109.47447 * 59.99605 * 17 16 14 31 31 H 1.08995 * 109.47500 * 179.97438 * 17 16 14 32 32 H 1.09004 * 109.47221 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.46980 * 299.99790 * 18 17 16 34 34 H 0.96696 * 117.00631 * 179.97438 * 23 21 19 35 35 H 1.09000 * 109.46980 * 179.97438 * 24 14 13 36 36 H 1.08995 * 109.47217 * 299.99555 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8914 2.3965 1.2125 6 1 1.8914 2.3965 -1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7957 -5.5016 0.0000 13 8 2.8407 -6.3389 -0.0003 14 6 2.2611 -7.6701 -0.0002 15 1 1.3000 -7.6480 -0.5137 16 6 2.0581 -8.1379 1.4423 17 6 3.4072 -8.1690 2.1631 18 6 4.3488 -9.1352 1.4415 19 6 4.5520 -8.6675 -0.0011 20 1 4.9871 -7.6681 -0.0011 21 6 5.4789 -9.6195 -0.7120 22 8 5.0993 -10.2119 -1.6944 23 8 6.7263 -9.8094 -0.2541 24 6 3.2027 -8.6363 -0.7219 25 1 -0.4851 -0.8401 0.0004 26 1 3.1245 -3.7313 -0.8905 27 1 3.1244 -3.7313 0.8895 28 1 1.3873 -7.4495 1.9564 29 1 1.6234 -9.1374 1.4424 30 1 3.8424 -7.1696 2.1631 31 1 3.2625 -8.5018 3.1909 32 1 5.3102 -9.1571 1.9548 33 1 3.9137 -10.1346 1.4415 34 1 7.2838 -10.4299 -0.7431 35 1 2.7678 -9.6358 -0.7214 36 1 3.3474 -8.3032 -1.7495 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:25 Heat of formation + Delta-G solvation = -228.607326 kcal Electronic energy + Delta-G solvation = -20599.401842 eV Core-core repulsion = 17172.847876 eV Total energy + Delta-G solvation = -3426.553966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.02081 -41.28742 -39.05351 -37.15686 -36.79952 -34.77777 -32.37172 -32.04003 -30.76210 -27.13711 -25.64804 -23.99566 -22.98733 -22.04501 -20.63524 -20.30910 -19.08864 -18.64326 -17.96597 -17.54318 -17.21937 -16.82617 -16.39943 -15.96445 -15.73115 -15.30386 -14.85110 -14.61940 -14.41153 -14.26591 -14.15116 -13.73130 -13.62263 -13.42658 -12.95597 -12.76660 -12.68978 -12.56034 -12.10719 -11.93965 -11.91956 -11.65124 -11.62814 -11.56336 -11.26334 -11.13293 -11.06142 -10.39575 -8.94435 -8.93204 -6.31644 0.89791 1.06333 1.16746 1.52234 1.62848 1.76120 1.81419 2.07050 2.31255 3.00955 3.08821 3.42082 3.58102 3.66767 3.74411 3.95342 3.98493 4.05674 4.21936 4.30968 4.32701 4.35228 4.54397 4.58229 4.81005 4.86730 4.96675 5.02050 5.13472 5.19134 5.30737 5.38902 5.60116 5.64832 6.13729 6.63558 6.97854 7.03059 8.49268 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028014 B = 0.003272 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.262075 B = 8556.163884 C = 8962.047788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.016 4.016 3 Si 1.141 2.859 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.614 4.614 8 H 0.078 0.922 9 S -0.183 6.183 10 C -0.089 4.089 11 C 0.488 3.512 12 O -0.520 6.520 13 O -0.339 6.339 14 C 0.084 3.916 15 H 0.077 0.923 16 C -0.138 4.138 17 C -0.114 4.114 18 C -0.101 4.101 19 C -0.080 4.080 20 H 0.118 0.882 21 C 0.493 3.507 22 O -0.550 6.550 23 O -0.509 6.509 24 C -0.092 4.092 25 H 0.262 0.738 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.427 0.573 35 H 0.106 0.894 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.977 -20.672 3.208 25.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.220 4.220 3 Si 0.959 3.041 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.762 4.762 8 H 0.096 0.904 9 S 0.043 5.957 10 C -0.238 4.238 11 C 0.331 3.669 12 O -0.408 6.408 13 O -0.257 6.257 14 C 0.030 3.970 15 H 0.096 0.904 16 C -0.175 4.175 17 C -0.151 4.151 18 C -0.138 4.138 19 C -0.099 4.099 20 H 0.136 0.864 21 C 0.337 3.663 22 O -0.441 6.441 23 O -0.322 6.322 24 C -0.129 4.129 25 H 0.073 0.927 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.289 0.711 35 H 0.124 0.876 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.970 -19.275 3.163 22.909 hybrid contribution 1.314 -1.740 -0.610 2.264 sum 13.284 -21.015 2.553 24.993 Atomic orbital electron populations 1.70871 1.07997 1.30109 1.45781 1.27810 0.96289 1.06314 0.91553 0.82645 0.74132 0.69390 0.77885 1.18689 1.19960 1.20057 1.24075 0.96668 0.92398 1.63009 0.90381 1.85007 1.12050 1.01037 1.97571 1.22905 1.02701 0.89733 1.08444 1.22859 0.84927 0.87528 0.71634 1.90655 1.18306 1.85976 1.45890 1.86519 1.39930 1.15606 1.83615 1.22962 0.97536 0.77873 0.98675 0.90448 1.22024 0.99127 1.03034 0.93325 1.21476 0.93764 1.00125 0.99747 1.21516 1.01537 0.99648 0.91102 1.21061 0.92947 0.98978 0.96870 0.86425 1.23555 0.81337 0.79991 0.81464 1.90724 1.76919 1.48691 1.27799 1.84503 1.24869 1.63877 1.58967 1.21527 0.93274 0.99341 0.98805 0.92715 0.86060 0.85772 0.92767 0.87785 0.91995 0.89358 0.88957 0.90140 0.71083 0.87596 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.73 13.67 21.65 0.30 -56.43 16 2 C -0.02 -0.92 5.49 84.86 0.47 -0.45 16 3 Si 1.14 48.45 29.92 68.60 2.05 50.51 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.61 -34.53 9.50 67.95 0.65 -33.89 16 8 H 0.08 4.13 7.80 -2.91 -0.02 4.11 16 9 S -0.18 -9.74 19.60 -56.49 -1.11 -10.85 16 10 C -0.09 -3.47 6.27 71.24 0.45 -3.03 16 11 C 0.49 17.66 7.95 71.24 0.57 18.23 16 12 O -0.52 -22.18 15.08 21.98 0.33 -21.85 16 13 O -0.34 -9.50 8.54 -51.40 -0.44 -9.93 16 14 C 0.08 1.93 2.75 30.60 0.08 2.02 16 15 H 0.08 2.04 7.16 -2.39 -0.02 2.03 16 16 C -0.14 -2.61 5.65 30.59 0.17 -2.43 16 17 C -0.11 -1.71 5.78 30.59 0.18 -1.54 16 18 C -0.10 -1.23 5.14 30.60 0.16 -1.08 16 19 C -0.08 -1.27 2.49 -11.54 -0.03 -1.30 16 20 H 0.12 1.98 7.68 -2.39 -0.02 1.96 16 21 C 0.49 8.35 7.63 71.23 0.54 8.90 16 22 O -0.55 -12.90 16.74 21.95 0.37 -12.53 16 23 O -0.51 -5.86 13.33 -51.42 -0.69 -6.54 16 24 C -0.09 -1.72 4.24 30.60 0.13 -1.59 16 25 H 0.26 16.86 7.13 -92.70 -0.66 16.20 16 26 H 0.12 4.34 8.14 -2.40 -0.02 4.32 16 27 H 0.12 4.38 8.14 -2.40 -0.02 4.36 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.11 7.68 -2.39 -0.02 1.09 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 0.95 8.11 -2.38 -0.02 0.93 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.43 1.44 9.10 -74.06 -0.67 0.76 16 35 H 0.11 1.72 8.10 -2.39 -0.02 1.70 16 36 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 Total: -1.00 -75.36 320.76 4.71 -70.65 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.53 Total: 13.15 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 3.36 Total: -16.17 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.30 Total: -56.43 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.43 Total: -50.86 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.05 Total: 50.51 kcal Atomic # 16 Polarization: -9.74 SS G_CDS: -1.11 Total: -10.85 kcal Total: -75.36 4.71 -70.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.960 kcal (2) G-P(sol) polarization free energy of solvation -75.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds