Wall clock time and date at job start Tue Mar 31 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48503 * 109.47218 * 240.00146 * 3 2 1 5 5 H 1.48496 * 109.47281 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46713 * 120.00501 * 3 2 1 7 7 C 1.38802 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99804 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.46884 * 180.02562 * 12 11 10 14 14 C 1.34231 * 116.99983 * 179.97438 * 13 12 11 15 15 O 1.20822 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 C 1.50704 * 112.85233 * 50.33479 * 16 14 13 18 18 O 1.20815 * 120.00099 * 129.66960 * 17 16 14 19 19 O 1.34232 * 119.99608 * 309.66713 * 17 16 14 20 20 C 1.53788 * 113.61602 * 279.13846 * 16 14 13 21 21 C 1.53956 * 87.02029 * 220.04841 * 20 16 14 22 22 C 1.53783 * 113.61425 * 181.53145 * 16 14 13 23 23 H 0.96996 * 119.99880 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46718 * 59.99828 * 10 9 7 25 25 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 26 26 H 1.09001 * 109.46652 * 60.00210 * 11 10 9 27 27 H 1.08992 * 109.47514 * 300.00299 * 11 10 9 28 28 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 29 29 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 30 30 H 0.96700 * 116.99427 * 180.02562 * 19 17 16 31 31 H 1.09004 * 113.61204 * 334.56962 * 20 16 14 32 32 H 1.09000 * 113.61389 * 105.46727 * 20 16 14 33 33 H 1.08996 * 113.53721 * 270.81020 * 21 20 16 34 34 H 1.09000 * 113.73905 * 139.93847 * 21 20 16 35 35 H 1.08999 * 113.61641 * 254.52665 * 22 16 14 36 36 H 1.08994 * 113.61435 * 25.34897 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 0.0001 12 6 3.1513 -6.3078 -0.0005 13 8 2.6421 -7.6675 -0.0005 14 6 3.5485 -8.6577 -0.0016 15 8 4.7282 -8.3968 -0.0020 16 6 3.0946 -10.0947 -0.0023 17 6 2.0725 -10.3851 -1.0710 18 8 2.2263 -11.3248 -1.8145 19 8 0.9912 -9.5997 -1.1966 20 6 2.6963 -10.6156 1.3888 21 6 3.3948 -11.9333 1.0069 22 6 4.2522 -11.1063 0.0342 23 1 -0.4850 0.8400 0.0004 24 1 3.1244 -3.7314 0.8895 25 1 3.1245 -3.7314 -0.8905 26 1 1.3704 -5.4846 -0.8897 27 1 1.3709 -5.4841 0.8902 28 1 3.7594 -6.1478 -0.8909 29 1 3.7605 -6.1476 0.8891 30 1 0.3633 -9.8259 -1.8964 31 1 3.1814 -10.0859 2.2087 32 1 1.6196 -10.7149 1.5261 33 1 2.7370 -12.6468 0.5107 34 1 3.9658 -12.3793 1.8212 35 1 4.4297 -11.6014 -0.9205 36 1 5.1639 -10.7107 0.4817 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605601548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:50 Heat of formation + Delta-G solvation = -168.546589 kcal Electronic energy + Delta-G solvation = -20171.974979 eV Core-core repulsion = 16748.025442 eV Total energy + Delta-G solvation = -3423.949537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.80221 -40.14435 -38.36326 -36.64058 -36.34447 -33.53451 -32.45692 -28.94048 -26.47627 -26.26019 -25.43696 -23.50740 -21.97214 -21.34106 -19.75874 -18.65015 -18.06897 -17.43840 -17.04597 -16.92149 -16.24972 -15.69900 -15.01265 -14.83420 -14.63668 -14.60012 -13.83005 -13.34806 -13.05513 -13.02643 -12.75671 -12.58151 -12.12861 -11.94478 -11.90518 -11.52775 -11.36417 -11.16295 -11.05449 -11.00684 -10.96505 -10.89981 -10.70145 -10.49686 -10.32254 -9.65469 -9.08239 -8.37681 -6.58003 -6.26007 -3.97224 1.48853 1.88488 2.44272 2.58266 3.20238 3.21918 3.26495 3.50742 3.61582 3.83399 4.17950 4.18862 4.39723 4.66912 4.94065 5.07201 5.10721 5.13220 5.14601 5.19308 5.34471 5.37536 5.41404 5.45202 5.51832 5.74877 5.79459 5.85470 6.08328 6.12801 6.33670 6.43216 6.64842 7.44365 7.54360 7.57467 8.33261 9.20247 10.82118 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.038911 B = 0.002707 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.410390 B =10339.354748 C =10684.090451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.096 4.096 12 C 0.070 3.930 13 O -0.336 6.336 14 C 0.479 3.521 15 O -0.495 6.495 16 C -0.087 4.087 17 C 0.511 3.489 18 O -0.501 6.501 19 O -0.491 6.491 20 C -0.106 4.106 21 C -0.142 4.142 22 C -0.102 4.102 23 H 0.268 0.732 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.416 0.584 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -23.031 1.509 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.106 5.894 10 C -0.264 4.264 11 C -0.135 4.135 12 C -0.005 4.005 13 O -0.251 6.251 14 C 0.320 3.680 15 O -0.383 6.383 16 C -0.090 4.090 17 C 0.351 3.649 18 O -0.389 6.389 19 O -0.301 6.301 20 C -0.144 4.144 21 C -0.179 4.179 22 C -0.139 4.139 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.275 0.725 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.792 -23.114 1.609 23.478 hybrid contribution 1.548 1.401 -0.562 2.162 sum 5.340 -21.713 1.047 22.384 Atomic orbital electron populations 1.70007 1.05928 1.27539 1.47029 1.25017 0.95098 0.99117 0.94504 0.86205 0.79226 0.81103 0.78887 1.19907 1.20787 1.19903 1.22658 0.94560 0.90707 1.58827 0.90897 1.84652 1.08731 0.99172 1.96886 1.23190 1.03470 0.96383 1.03321 1.21268 0.96346 0.91391 1.04451 1.23359 0.97953 0.76536 1.02632 1.86576 1.39350 1.16628 1.82561 1.22629 0.84751 0.87480 0.73165 1.90689 1.18258 1.84412 1.44931 1.21769 0.97995 0.91105 0.98084 1.21940 0.80956 0.79365 0.82596 1.90735 1.76113 1.29417 1.42644 1.84628 1.33097 1.55468 1.56943 1.22985 1.03113 0.96462 0.91807 1.22983 0.99050 0.96204 0.99687 1.22976 0.95394 0.93167 1.02334 0.92179 0.91736 0.91759 0.90267 0.90248 0.91124 0.91005 0.72493 0.87598 0.89049 0.89119 0.89515 0.88793 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.75 9.50 30.94 0.29 -14.45 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.12 -3.15 21.44 -107.50 -2.30 -5.46 16 10 C -0.12 -2.27 5.67 37.16 0.21 -2.05 16 11 C -0.10 -1.54 5.60 -26.73 -0.15 -1.69 16 12 C 0.07 0.99 5.47 37.16 0.20 1.20 16 13 O -0.34 -4.57 9.34 -43.74 -0.41 -4.98 16 14 C 0.48 6.13 7.00 36.00 0.25 6.38 16 15 O -0.50 -7.35 15.66 -18.75 -0.29 -7.65 16 16 C -0.09 -0.86 1.27 -155.99 -0.20 -1.06 16 17 C 0.51 5.27 7.10 36.01 0.26 5.52 16 18 O -0.50 -6.02 16.59 -18.74 -0.31 -6.33 16 19 O -0.49 -4.36 12.54 -43.75 -0.55 -4.91 16 20 C -0.11 -0.76 7.22 -25.82 -0.19 -0.94 16 21 C -0.14 -0.89 7.76 -25.82 -0.20 -1.09 16 22 C -0.10 -0.85 6.78 -25.91 -0.18 -1.02 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 24 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 25 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 29 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 30 H 0.42 1.81 9.10 45.56 0.41 2.23 16 31 H 0.11 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.83 7.42 -51.93 -0.39 0.44 16 36 H 0.11 0.92 7.45 -51.93 -0.39 0.53 16 LS Contribution 329.90 15.07 4.97 4.97 Total: -1.00 -33.99 329.90 -7.10 -41.09 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -4.12 Total: -0.79 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 0.21 Total: -7.28 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.73 Total: -25.02 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -1.56 Total: -23.87 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.30 Total: -5.46 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.99 -7.10 -41.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605601548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.456 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds