Wall clock time and date at job start Tue Mar 31 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48503 * 109.47218 * 240.00146 * 3 2 1 5 5 H 1.48496 * 109.47281 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46713 * 120.00501 * 3 2 1 7 7 C 1.38802 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99804 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.46884 * 180.02562 * 12 11 10 14 14 C 1.34231 * 116.99983 * 179.97438 * 13 12 11 15 15 O 1.20822 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 C 1.50704 * 112.85233 * 50.33479 * 16 14 13 18 18 O 1.20815 * 120.00099 * 129.66960 * 17 16 14 19 19 O 1.34232 * 119.99608 * 309.66713 * 17 16 14 20 20 C 1.53788 * 113.61602 * 279.13846 * 16 14 13 21 21 C 1.53956 * 87.02029 * 220.04841 * 20 16 14 22 22 C 1.53783 * 113.61425 * 181.53145 * 16 14 13 23 23 H 0.96996 * 119.99880 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46718 * 59.99828 * 10 9 7 25 25 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 26 26 H 1.09001 * 109.46652 * 60.00210 * 11 10 9 27 27 H 1.08992 * 109.47514 * 300.00299 * 11 10 9 28 28 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 29 29 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 30 30 H 0.96700 * 116.99427 * 180.02562 * 19 17 16 31 31 H 1.09004 * 113.61204 * 334.56962 * 20 16 14 32 32 H 1.09000 * 113.61389 * 105.46727 * 20 16 14 33 33 H 1.08996 * 113.53721 * 270.81020 * 21 20 16 34 34 H 1.09000 * 113.73905 * 139.93847 * 21 20 16 35 35 H 1.08999 * 113.61641 * 254.52665 * 22 16 14 36 36 H 1.08994 * 113.61435 * 25.34897 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 0.0001 12 6 3.1513 -6.3078 -0.0005 13 8 2.6421 -7.6675 -0.0005 14 6 3.5485 -8.6577 -0.0016 15 8 4.7282 -8.3968 -0.0020 16 6 3.0946 -10.0947 -0.0023 17 6 2.0725 -10.3851 -1.0710 18 8 2.2263 -11.3248 -1.8145 19 8 0.9912 -9.5997 -1.1966 20 6 2.6963 -10.6156 1.3888 21 6 3.3948 -11.9333 1.0069 22 6 4.2522 -11.1063 0.0342 23 1 -0.4850 0.8400 0.0004 24 1 3.1244 -3.7314 0.8895 25 1 3.1245 -3.7314 -0.8905 26 1 1.3704 -5.4846 -0.8897 27 1 1.3709 -5.4841 0.8902 28 1 3.7594 -6.1478 -0.8909 29 1 3.7605 -6.1476 0.8891 30 1 0.3633 -9.8259 -1.8964 31 1 3.1814 -10.0859 2.2087 32 1 1.6196 -10.7149 1.5261 33 1 2.7370 -12.6468 0.5107 34 1 3.9658 -12.3793 1.8212 35 1 4.4297 -11.6014 -0.9205 36 1 5.1639 -10.7107 0.4817 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605601548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:50 Heat of formation + Delta-G solvation = -189.405604 kcal Electronic energy + Delta-G solvation = -20172.879494 eV Core-core repulsion = 16748.025442 eV Total energy + Delta-G solvation = -3424.854052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.62745 -41.09838 -39.11835 -37.68873 -37.13047 -34.91964 -34.58188 -29.78128 -28.02913 -27.26585 -26.88199 -24.33264 -22.97085 -22.56006 -20.45801 -19.73076 -19.34689 -18.90460 -18.08174 -17.87811 -17.11505 -16.89683 -16.53141 -16.17238 -15.92619 -15.59210 -15.16555 -14.60471 -14.22334 -14.03248 -13.84709 -13.61245 -13.35976 -13.11883 -12.93578 -12.75639 -12.66963 -12.63750 -12.41660 -12.39834 -12.15853 -11.69787 -11.66127 -11.55707 -11.52256 -11.33835 -11.14023 -10.36253 -8.67986 -8.38078 -6.14561 0.62947 0.96388 1.27682 1.41099 1.41986 1.50356 1.81335 1.86210 2.27152 2.89655 2.96472 3.19090 3.27653 3.50405 3.64196 3.83873 3.95468 4.02858 4.14545 4.30905 4.32160 4.50089 4.59313 4.61883 4.67875 4.81045 4.86547 5.00109 5.01696 5.08318 5.25696 5.32080 5.39653 5.43678 6.17490 6.46396 6.84084 7.04376 8.71036 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.038911 B = 0.002707 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.410390 B =10339.354748 C =10684.090451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.016 3.984 3 Si 0.993 3.007 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.074 0.926 9 S -0.183 6.183 10 C -0.092 4.092 11 C -0.084 4.084 12 C 0.077 3.923 13 O -0.338 6.338 14 C 0.479 3.521 15 O -0.519 6.519 16 C -0.097 4.097 17 C 0.515 3.485 18 O -0.522 6.522 19 O -0.494 6.494 20 C -0.101 4.101 21 C -0.128 4.128 22 C -0.104 4.104 23 H 0.272 0.728 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.433 0.567 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.277 -23.656 2.085 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.815 3.185 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.689 4.689 8 H 0.092 0.908 9 S 0.045 5.955 10 C -0.241 4.241 11 C -0.122 4.122 12 C 0.002 3.998 13 O -0.254 6.254 14 C 0.322 3.678 15 O -0.407 6.407 16 C -0.099 4.099 17 C 0.356 3.644 18 O -0.412 6.412 19 O -0.307 6.307 20 C -0.138 4.138 21 C -0.165 4.165 22 C -0.141 4.141 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.296 0.704 31 H 0.133 0.867 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.618 -23.752 2.178 24.294 hybrid contribution 1.272 1.511 -0.766 2.118 sum 5.891 -22.241 1.413 23.051 Atomic orbital electron populations 1.70137 1.07642 1.28689 1.47823 1.26052 0.96031 1.03069 0.93716 0.85079 0.77949 0.76136 0.79344 1.19006 1.19967 1.18911 1.23030 0.94855 0.91985 1.59078 0.90774 1.84627 1.13047 1.00750 1.97063 1.23078 1.00812 0.96572 1.03672 1.21077 0.96942 0.89654 1.04549 1.23122 0.96783 0.76811 1.03106 1.86569 1.39695 1.16415 1.82718 1.23188 0.84334 0.88169 0.72097 1.90677 1.19155 1.84831 1.46080 1.22055 0.98904 0.89141 0.99845 1.21981 0.81127 0.79043 0.82228 1.90729 1.76704 1.30404 1.43338 1.84596 1.33170 1.55153 1.57815 1.23094 1.04019 0.96530 0.90196 1.22939 0.98431 0.95629 0.99533 1.23035 0.95289 0.93104 1.02662 0.91891 0.91194 0.91456 0.90366 0.90030 0.91005 0.90279 0.70403 0.86747 0.88038 0.89127 0.87285 0.89601 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.19 13.22 21.65 0.29 -53.90 16 2 C 0.02 0.93 5.49 84.86 0.47 1.40 16 3 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.54 -30.90 9.50 67.95 0.65 -30.25 16 8 H 0.07 4.06 7.80 -2.91 -0.02 4.03 16 9 S -0.18 -9.56 21.44 -56.49 -1.21 -10.77 16 10 C -0.09 -3.58 5.67 71.98 0.41 -3.18 16 11 C -0.08 -2.60 5.60 30.59 0.17 -2.43 16 12 C 0.08 2.08 5.47 71.98 0.39 2.47 16 13 O -0.34 -8.75 9.34 -47.14 -0.44 -9.19 16 14 C 0.48 11.70 7.00 71.24 0.50 12.20 16 15 O -0.52 -14.91 15.66 21.98 0.34 -14.57 16 16 C -0.10 -1.79 1.27 -53.14 -0.07 -1.85 16 17 C 0.51 10.02 7.10 71.24 0.51 10.52 16 18 O -0.52 -12.09 16.59 22.00 0.36 -11.72 16 19 O -0.49 -8.12 12.54 -47.15 -0.59 -8.71 16 20 C -0.10 -1.22 7.22 31.18 0.23 -0.99 16 21 C -0.13 -1.31 7.76 31.18 0.24 -1.06 16 22 C -0.10 -1.60 6.78 31.12 0.21 -1.39 16 23 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 24 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.07 1.93 8.13 -2.39 -0.02 1.92 16 29 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 30 H 0.43 3.21 9.10 -74.06 -0.67 2.54 16 31 H 0.11 1.20 8.09 -2.39 -0.02 1.19 16 32 H 0.10 1.03 8.09 -2.39 -0.02 1.01 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 34 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 1.46 7.42 -2.39 -0.02 1.44 16 36 H 0.11 1.71 7.45 -2.39 -0.02 1.70 16 Total: -1.00 -72.69 329.90 4.90 -67.79 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.42 Total: 10.13 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 3.70 Total: -14.56 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.29 Total: -53.90 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -0.32 Total: -44.20 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -9.56 SS G_CDS: -1.21 Total: -10.77 kcal Total: -72.69 4.90 -67.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605601548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.618 kcal (2) G-P(sol) polarization free energy of solvation -72.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds