Wall clock time and date at job start Tue Mar 31 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46795 * 239.99498 * 3 2 1 5 5 H 1.48495 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46980 * 119.99933 * 3 2 1 7 7 C 1.38806 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99901 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99738 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46848 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46984 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.47075 * 180.02562 * 12 11 10 14 14 C 1.34229 * 117.00025 * 179.97438 * 13 12 11 15 15 O 1.20823 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00042 * 179.97438 * 14 13 12 17 17 H 1.09002 * 112.84780 * 16.48443 * 16 14 13 18 18 C 1.53782 * 113.60978 * 147.78345 * 16 14 13 19 19 C 1.53782 * 87.07964 * 89.11934 * 18 16 14 20 20 C 1.53771 * 113.61658 * 245.28014 * 16 14 13 21 21 H 1.09000 * 113.61269 * 156.33656 * 20 16 14 22 22 C 1.50701 * 113.61781 * 25.51904 * 20 16 14 23 23 O 1.20830 * 119.99762 * 22.50447 * 22 20 16 24 24 O 1.34229 * 120.00654 * 202.50786 * 22 20 16 25 25 H 0.96999 * 119.99989 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47338 * 60.00159 * 10 9 7 27 27 H 1.09000 * 109.47068 * 299.99798 * 10 9 7 28 28 H 1.09000 * 109.47114 * 299.99761 * 11 10 9 29 29 H 1.08998 * 109.47028 * 59.99961 * 11 10 9 30 30 H 1.09000 * 109.47216 * 299.99963 * 12 11 10 31 31 H 1.08998 * 109.47054 * 60.00242 * 12 11 10 32 32 H 1.09003 * 113.61348 * 203.66438 * 18 16 14 33 33 H 1.08995 * 113.61826 * 334.57151 * 18 16 14 34 34 H 1.08992 * 113.61260 * 270.87647 * 19 18 16 35 35 H 1.09001 * 113.60940 * 139.98011 * 19 18 16 36 36 H 0.96691 * 117.00140 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9791 -5.3243 0.0017 12 6 3.1511 -6.3078 0.0024 13 8 2.6419 -7.6676 0.0014 14 6 3.5481 -8.6577 0.0013 15 8 4.7279 -8.3968 0.0025 16 6 3.0942 -10.0948 0.0009 17 1 2.0483 -10.2081 -0.2844 18 6 4.0456 -11.0410 -0.7504 19 6 4.7917 -11.2215 0.5821 20 6 3.4702 -10.8600 1.2806 21 1 2.8312 -11.7206 1.4784 22 6 3.6454 -9.9720 2.4855 23 8 3.1185 -8.8851 2.5167 24 8 4.3869 -10.3884 3.5241 25 1 -0.4850 0.8400 -0.0004 26 1 3.1236 -3.7311 0.8925 27 1 3.1250 -3.7318 -0.8875 28 1 1.3695 -5.4843 0.8911 29 1 1.3714 -5.4844 -0.8889 30 1 3.7603 -6.1477 -0.8872 31 1 3.7591 -6.1478 0.8928 32 1 3.5639 -11.9511 -1.1078 33 1 4.6382 -10.5447 -1.5188 34 1 5.5841 -10.4902 0.7414 35 1 5.1165 -12.2457 0.7653 36 1 4.4699 -9.7843 4.2744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605601597.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:27 Heat of formation + Delta-G solvation = -170.513188 kcal Electronic energy + Delta-G solvation = -20221.397779 eV Core-core repulsion = 16797.362963 eV Total energy + Delta-G solvation = -3424.034816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.67525 -39.97580 -38.33571 -36.38587 -36.24117 -33.41010 -32.41819 -28.11925 -27.79382 -26.08372 -25.31861 -22.66294 -22.12545 -21.22960 -19.59731 -18.55168 -17.85795 -17.40566 -17.15424 -16.70017 -16.09145 -15.61293 -15.16992 -14.79774 -14.62713 -14.35589 -13.98644 -13.23866 -13.17802 -12.99096 -12.62591 -12.41312 -12.06878 -12.00603 -11.84561 -11.48879 -11.26660 -11.08209 -11.06993 -10.90215 -10.88049 -10.69375 -10.65171 -10.32942 -10.17175 -9.60035 -9.04519 -8.32304 -6.53115 -6.22085 -3.92821 1.82436 2.09636 2.49982 2.73988 3.23451 3.24607 3.29006 3.56750 3.74328 3.95079 4.17574 4.22571 4.38555 4.79936 4.88195 5.00991 5.12005 5.13722 5.21588 5.26290 5.28873 5.39743 5.44902 5.47256 5.57639 5.77858 5.85398 5.98385 6.18246 6.24533 6.52467 6.54527 6.75033 7.55053 7.61221 7.77561 8.37234 9.23956 10.86091 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.035213 B = 0.002721 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.959434 B =10286.795488 C =10481.427446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.124 6.124 10 C -0.113 4.113 11 C -0.097 4.097 12 C 0.077 3.923 13 O -0.340 6.340 14 C 0.488 3.512 15 O -0.514 6.514 16 C -0.098 4.098 17 H 0.120 0.880 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.090 4.090 21 H 0.145 0.855 22 C 0.480 3.520 23 O -0.497 6.497 24 O -0.513 6.513 25 H 0.268 0.732 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.636 -26.058 1.802 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.667 4.667 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.262 4.262 11 C -0.135 4.135 12 C 0.002 3.998 13 O -0.255 6.255 14 C 0.331 3.669 15 O -0.404 6.404 16 C -0.117 4.117 17 H 0.138 0.862 18 C -0.157 4.157 19 C -0.161 4.161 20 C -0.109 4.109 21 H 0.162 0.838 22 C 0.321 3.679 23 O -0.384 6.384 24 O -0.325 6.325 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 6.495 -25.949 1.478 26.790 hybrid contribution 1.914 1.850 0.639 2.738 sum 8.409 -24.099 2.116 25.611 Atomic orbital electron populations 1.70012 1.05926 1.27483 1.47118 1.25018 0.95095 0.99096 0.94553 0.86204 0.79218 0.81120 0.78870 1.19916 1.20799 1.19918 1.22664 0.94566 0.90738 1.58701 0.90917 1.84645 1.08874 0.99150 1.96872 1.23176 1.03356 0.96425 1.03250 1.21266 0.96513 0.91494 1.04259 1.23211 0.97666 0.76688 1.02229 1.86440 1.39788 1.16699 1.82617 1.22515 0.84469 0.87900 0.71987 1.90633 1.18560 1.84945 1.46228 1.22061 1.03723 0.88971 0.96981 0.86218 1.22853 0.96756 0.98580 0.97476 1.23030 0.95319 1.03642 0.94068 1.22506 1.02118 0.98359 0.87913 0.83782 1.23256 0.74806 0.86214 0.83628 1.90843 1.45358 1.22257 1.79931 1.84484 1.66611 1.52227 1.29188 0.92214 0.91792 0.91799 0.90306 0.90453 0.91432 0.91308 0.87838 0.89446 0.88112 0.89500 0.72853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -15.14 9.50 30.94 0.29 -14.84 16 8 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.12 -3.31 21.44 -107.50 -2.30 -5.62 16 10 C -0.11 -2.39 5.67 37.16 0.21 -2.18 16 11 C -0.10 -1.73 5.60 -26.73 -0.15 -1.88 16 12 C 0.08 1.26 5.47 37.16 0.20 1.46 16 13 O -0.34 -5.35 9.95 -43.24 -0.43 -5.78 16 14 C 0.49 6.79 4.74 36.01 0.17 6.96 16 15 O -0.51 -8.16 14.97 -18.75 -0.28 -8.44 16 16 C -0.10 -0.87 4.27 -90.96 -0.39 -1.26 16 17 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 18 C -0.12 -0.73 7.46 -25.92 -0.19 -0.93 16 19 C -0.12 -0.82 7.20 -25.92 -0.19 -1.01 16 20 C -0.09 -0.66 4.21 -90.97 -0.38 -1.05 16 21 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 22 C 0.48 5.03 7.32 36.01 0.26 5.29 16 23 O -0.50 -7.28 15.22 -22.74 -0.35 -7.63 16 24 O -0.51 -4.08 13.42 -39.25 -0.53 -4.61 16 25 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 27 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.07 1.06 8.13 -51.93 -0.42 0.63 16 31 H 0.07 1.17 8.13 -51.93 -0.42 0.74 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.64 8.01 -51.93 -0.42 0.22 16 34 H 0.10 0.93 7.09 -51.93 -0.37 0.56 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.41 1.89 9.10 45.56 0.41 2.31 16 LS Contribution 327.74 15.07 4.94 4.94 Total: -1.00 -36.31 327.74 -7.63 -43.95 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.14 Total: -0.58 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.25 Total: -7.47 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.73 Total: -25.56 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -1.58 Total: -26.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -2.30 Total: -5.62 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.31 -7.63 -43.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605601597.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.567 kcal (2) G-P(sol) polarization free energy of solvation -36.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds