Wall clock time and date at job start Tue Mar 31 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46795 * 239.99498 * 3 2 1 5 5 H 1.48495 * 109.47348 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46980 * 119.99933 * 3 2 1 7 7 C 1.38806 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99901 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99738 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46848 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46984 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.47075 * 180.02562 * 12 11 10 14 14 C 1.34229 * 117.00025 * 179.97438 * 13 12 11 15 15 O 1.20823 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00042 * 179.97438 * 14 13 12 17 17 H 1.09002 * 112.84780 * 16.48443 * 16 14 13 18 18 C 1.53782 * 113.60978 * 147.78345 * 16 14 13 19 19 C 1.53782 * 87.07964 * 89.11934 * 18 16 14 20 20 C 1.53771 * 113.61658 * 245.28014 * 16 14 13 21 21 H 1.09000 * 113.61269 * 156.33656 * 20 16 14 22 22 C 1.50701 * 113.61781 * 25.51904 * 20 16 14 23 23 O 1.20830 * 119.99762 * 22.50447 * 22 20 16 24 24 O 1.34229 * 120.00654 * 202.50786 * 22 20 16 25 25 H 0.96999 * 119.99989 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47338 * 60.00159 * 10 9 7 27 27 H 1.09000 * 109.47068 * 299.99798 * 10 9 7 28 28 H 1.09000 * 109.47114 * 299.99761 * 11 10 9 29 29 H 1.08998 * 109.47028 * 59.99961 * 11 10 9 30 30 H 1.09000 * 109.47216 * 299.99963 * 12 11 10 31 31 H 1.08998 * 109.47054 * 60.00242 * 12 11 10 32 32 H 1.09003 * 113.61348 * 203.66438 * 18 16 14 33 33 H 1.08995 * 113.61826 * 334.57151 * 18 16 14 34 34 H 1.08992 * 113.61260 * 270.87647 * 19 18 16 35 35 H 1.09001 * 113.60940 * 139.98011 * 19 18 16 36 36 H 0.96691 * 117.00140 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9791 -5.3243 0.0017 12 6 3.1511 -6.3078 0.0024 13 8 2.6419 -7.6676 0.0014 14 6 3.5481 -8.6577 0.0013 15 8 4.7279 -8.3968 0.0025 16 6 3.0942 -10.0948 0.0009 17 1 2.0483 -10.2081 -0.2844 18 6 4.0456 -11.0410 -0.7504 19 6 4.7917 -11.2215 0.5821 20 6 3.4702 -10.8600 1.2806 21 1 2.8312 -11.7206 1.4784 22 6 3.6454 -9.9720 2.4855 23 8 3.1185 -8.8851 2.5167 24 8 4.3869 -10.3884 3.5241 25 1 -0.4850 0.8400 -0.0004 26 1 3.1236 -3.7311 0.8925 27 1 3.1250 -3.7318 -0.8875 28 1 1.3695 -5.4843 0.8911 29 1 1.3714 -5.4844 -0.8889 30 1 3.7603 -6.1477 -0.8872 31 1 3.7591 -6.1478 0.8928 32 1 3.5639 -11.9511 -1.1078 33 1 4.6382 -10.5447 -1.5188 34 1 5.5841 -10.4902 0.7414 35 1 5.1165 -12.2457 0.7653 36 1 4.4699 -9.7843 4.2744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605601597.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:26 Heat of formation + Delta-G solvation = -194.315255 kcal Electronic energy + Delta-G solvation = -20222.429914 eV Core-core repulsion = 16797.362963 eV Total energy + Delta-G solvation = -3425.066951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.50271 -40.94064 -39.15194 -37.38428 -37.15462 -34.94248 -34.60749 -29.05841 -28.49092 -27.86991 -26.91913 -23.42405 -23.02762 -22.64793 -20.47405 -19.57044 -19.30252 -18.73084 -18.11789 -17.79530 -16.99400 -16.92088 -16.67431 -15.98785 -15.94061 -15.80676 -15.08081 -14.70540 -14.22050 -13.96511 -13.86912 -13.76858 -13.24105 -13.15793 -12.94872 -12.68240 -12.66963 -12.61073 -12.43953 -12.38118 -12.19613 -11.65647 -11.56349 -11.53639 -11.42859 -11.19364 -11.16370 -10.40957 -8.71881 -8.40143 -6.17708 0.97210 1.17209 1.25802 1.39818 1.41597 1.50468 1.80210 2.08269 2.24813 2.94112 3.11979 3.25083 3.37768 3.53529 3.67945 3.78158 3.94083 4.07856 4.11152 4.26453 4.35506 4.44608 4.48937 4.61667 4.66168 4.74831 4.95398 4.95677 5.02822 5.06686 5.29155 5.36891 5.50393 5.52842 6.15206 6.67507 6.86510 7.01634 8.69250 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.035213 B = 0.002721 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.959434 B =10286.795488 C =10481.427446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.016 3.984 3 Si 0.996 3.004 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.074 0.926 9 S -0.183 6.183 10 C -0.091 4.091 11 C -0.084 4.084 12 C 0.086 3.914 13 O -0.351 6.351 14 C 0.479 3.521 15 O -0.542 6.542 16 C -0.110 4.110 17 H 0.141 0.859 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.084 4.084 21 H 0.190 0.810 22 C 0.475 3.525 23 O -0.549 6.549 24 O -0.506 6.506 25 H 0.273 0.727 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.146 0.854 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.439 -27.951 1.477 29.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.691 4.691 8 H 0.092 0.908 9 S 0.046 5.954 10 C -0.240 4.240 11 C -0.122 4.122 12 C 0.011 3.989 13 O -0.266 6.266 14 C 0.324 3.676 15 O -0.433 6.433 16 C -0.129 4.129 17 H 0.159 0.841 18 C -0.142 4.142 19 C -0.159 4.159 20 C -0.102 4.102 21 H 0.207 0.793 22 C 0.319 3.681 23 O -0.440 6.440 24 O -0.319 6.319 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 7.313 -27.879 1.167 28.846 hybrid contribution 1.713 2.322 0.791 2.992 sum 9.026 -25.557 1.958 27.174 Atomic orbital electron populations 1.70141 1.07683 1.28770 1.47684 1.26089 0.96075 1.03139 0.93591 0.85042 0.77932 0.75926 0.79364 1.18846 1.19750 1.19006 1.23026 0.94842 0.91900 1.59336 0.90822 1.84626 1.12926 1.00783 1.97066 1.23055 1.00876 0.96520 1.03511 1.21076 0.96957 0.89959 1.04216 1.22898 0.96517 0.77489 1.02039 1.86438 1.40667 1.16506 1.83030 1.23644 0.84018 0.89319 0.70612 1.90613 1.19643 1.85514 1.47502 1.22361 1.05551 0.85801 0.99182 0.84139 1.22967 0.95634 0.99014 0.96539 1.23002 0.94180 1.04456 0.94281 1.22838 1.03247 0.98531 0.85626 0.79279 1.24002 0.73717 0.85872 0.84515 1.90828 1.47632 1.24544 1.81004 1.84465 1.65715 1.52393 1.29364 0.91810 0.91798 0.91111 0.90946 0.89888 0.90746 0.92370 0.83580 0.90962 0.91410 0.86305 0.71414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.47 13.22 21.65 0.29 -55.18 16 2 C 0.02 0.94 5.49 84.86 0.47 1.40 16 3 Si 1.00 44.62 29.55 68.60 2.03 46.64 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -32.13 9.50 67.96 0.65 -31.48 16 8 H 0.07 4.19 7.80 -2.91 -0.02 4.17 16 9 S -0.18 -10.03 21.44 -56.49 -1.21 -11.24 16 10 C -0.09 -3.88 5.67 71.98 0.41 -3.47 16 11 C -0.08 -3.02 5.60 30.59 0.17 -2.85 16 12 C 0.09 2.85 5.47 71.98 0.39 3.24 16 13 O -0.35 -11.08 9.95 -47.60 -0.47 -11.55 16 14 C 0.48 13.20 4.74 71.24 0.34 13.54 16 15 O -0.54 -17.47 14.97 21.97 0.33 -17.14 16 16 C -0.11 -1.71 4.27 -11.02 -0.05 -1.76 16 17 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 18 C -0.10 -0.95 7.46 31.12 0.23 -0.72 16 19 C -0.12 -1.30 7.20 31.12 0.22 -1.07 16 20 C -0.08 -1.00 4.21 -11.02 -0.05 -1.05 16 21 H 0.19 0.55 8.14 -2.39 -0.02 0.53 16 22 C 0.47 9.51 7.32 71.24 0.52 10.03 16 23 O -0.55 -16.30 15.22 25.76 0.39 -15.90 16 24 O -0.51 -7.47 13.42 -51.40 -0.69 -8.16 16 25 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 26 H 0.06 2.71 8.14 -2.40 -0.02 2.69 16 27 H 0.07 2.91 8.14 -2.40 -0.02 2.89 16 28 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.07 2.33 8.13 -2.39 -0.02 2.32 16 31 H 0.06 2.03 8.13 -2.39 -0.02 2.01 16 32 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.07 0.92 8.01 -2.39 -0.02 0.90 16 34 H 0.07 1.20 7.09 -2.39 -0.02 1.18 16 35 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.42 3.68 9.10 -74.06 -0.67 3.01 16 Total: -1.00 -81.29 327.74 4.39 -76.90 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.42 Total: 9.82 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 3.31 Total: -14.19 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.29 Total: -55.18 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -0.44 Total: -52.76 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -10.03 SS G_CDS: -1.21 Total: -11.24 kcal Total: -81.29 4.39 -76.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605601597.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.414 kcal (2) G-P(sol) polarization free energy of solvation -81.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds