Wall clock time and date at job start Tue Mar 31 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48492 * 109.47256 * 240.00059 * 3 2 1 5 5 H 1.48503 * 109.46819 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47158 * 119.99690 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 N 1.30972 * 126.43496 * 89.99799 * 11 10 9 13 13 C 1.35225 * 105.57717 * 180.02562 * 12 11 10 14 14 C 1.48401 * 126.41362 * 180.02562 * 13 12 11 15 15 C 1.39449 * 119.96634 * 359.72414 * 14 13 12 16 16 C 1.37723 * 120.02725 * 179.76789 * 15 14 13 17 17 C 1.39701 * 119.96880 * 0.51035 * 16 15 14 18 18 C 1.47690 * 120.03204 * 179.77012 * 17 16 15 19 19 O 1.21470 * 120.00291 * 179.97438 * 18 17 16 20 20 O 1.34727 * 119.99625 * 359.97335 * 18 17 16 21 21 C 1.39711 * 119.93804 * 359.74388 * 17 16 15 22 22 C 1.37712 * 119.96585 * 0.02562 * 21 17 16 23 23 N 1.30762 * 107.17079 * 0.02562 * 13 12 11 24 24 O 1.21285 * 110.09744 * 359.70324 * 23 13 12 25 25 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 30 30 H 1.07998 * 119.98400 * 0.02562 * 15 14 13 31 31 H 1.07997 * 120.01141 * 180.25734 * 16 15 14 32 32 H 0.96705 * 116.99268 * 179.97438 * 20 18 17 33 33 H 1.07994 * 120.01207 * 179.97438 * 21 17 16 34 34 H 1.08006 * 119.98014 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 7 1.1021 -5.6412 -1.0522 13 6 0.4699 -6.7351 -0.5702 14 6 -0.1544 -7.8166 -1.3720 15 6 -0.1255 -7.7564 -2.7649 16 6 -0.7003 -8.7617 -3.5103 17 6 -1.3218 -9.8368 -2.8703 18 6 -1.9431 -10.9132 -3.6683 19 8 -2.4829 -11.8480 -3.1113 20 8 -1.9111 -10.8582 -5.0140 21 6 -1.3546 -9.8932 -1.4747 22 6 -0.7749 -8.8888 -0.7320 23 7 0.5116 -6.6615 0.7347 24 8 1.0986 -5.6568 1.0768 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8904 28 1 2.8716 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8894 30 1 0.3514 -6.9230 -3.2593 31 1 -0.6742 -8.7169 -4.5890 32 1 -2.3307 -11.5859 -5.4932 33 1 -1.8351 -10.7235 -0.9788 34 1 -0.7998 -8.9323 0.3469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:13 Heat of formation + Delta-G solvation = -10.411847 kcal Electronic energy + Delta-G solvation = -20718.278900 eV Core-core repulsion = 17198.035400 eV Total energy + Delta-G solvation = -3520.243501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.26626 -40.73601 -39.05653 -36.46114 -35.72799 -34.61575 -32.85048 -31.54272 -31.38325 -30.10844 -25.98018 -25.88330 -23.62313 -23.17835 -22.14184 -21.42147 -20.53257 -18.51091 -17.96519 -17.78915 -17.31069 -16.43457 -16.03248 -15.97688 -15.26731 -14.72823 -14.58842 -14.11900 -13.84462 -13.74652 -13.36136 -13.34005 -12.55261 -12.50055 -12.10711 -11.98980 -11.73006 -11.51595 -11.45448 -11.02084 -11.00298 -10.88970 -10.76608 -10.29014 -10.19302 -9.58481 -9.38265 -9.36207 -8.91302 -8.49085 -6.13544 -4.18732 0.03416 1.02354 1.45469 2.03471 2.61997 2.66967 3.15381 3.27463 3.32706 3.34328 3.51162 3.54617 4.09703 4.36200 4.48568 4.59811 4.79296 4.95066 5.02281 5.23131 5.24434 5.43095 5.67935 5.71415 5.87914 5.90450 5.97390 6.07959 6.13423 6.17902 6.25787 6.41479 6.53842 7.42908 7.49356 7.50424 7.81283 8.16244 8.36120 8.86264 9.46513 10.97635 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.002657 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.303280 B =10536.252911 C =11024.971481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.030 4.030 11 C 0.222 3.778 12 N -0.486 5.486 13 C 0.190 3.810 14 C 0.032 3.968 15 C -0.091 4.091 16 C -0.061 4.061 17 C -0.123 4.123 18 C 0.530 3.470 19 O -0.514 6.514 20 O -0.511 6.511 21 C -0.055 4.055 22 C -0.100 4.100 23 N -0.381 5.381 24 O 0.079 5.921 25 H 0.264 0.736 26 H 0.027 0.973 27 H 0.024 0.976 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.415 0.585 33 H 0.144 0.856 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.893 -18.901 -6.466 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.069 4.069 11 C 0.003 3.997 12 N -0.219 5.219 13 C -0.079 4.079 14 C 0.030 3.970 15 C -0.111 4.111 16 C -0.079 4.079 17 C -0.125 4.125 18 C 0.374 3.626 19 O -0.404 6.404 20 O -0.322 6.322 21 C -0.073 4.073 22 C -0.120 4.120 23 N -0.089 5.089 24 O 0.018 5.982 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.166 0.834 31 H 0.164 0.836 32 H 0.274 0.726 33 H 0.162 0.838 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.397 -19.381 -5.997 20.336 hybrid contribution 0.107 0.626 -0.239 0.678 sum -1.290 -18.755 -6.236 19.807 Atomic orbital electron populations 1.69951 1.06175 1.27168 1.49620 1.25013 0.94875 0.99471 0.94846 0.86559 0.79507 0.82632 0.78752 1.20068 1.21244 1.20046 1.21016 0.93135 0.90157 1.52279 0.92031 1.19166 0.93552 0.89777 0.98549 1.20832 0.98018 0.83392 1.04646 1.29645 0.93868 0.96869 0.79276 1.72030 1.16362 1.04612 1.28874 1.23810 1.00576 0.95613 0.87927 1.17680 0.96274 0.90786 0.92248 1.21300 0.98513 0.99230 0.92057 1.21416 0.93938 0.91570 1.00999 1.19156 1.04600 0.95586 0.93138 1.20866 0.76244 0.84834 0.80632 1.90895 1.42392 1.34652 1.72421 1.84569 1.74785 1.52843 1.20036 1.21140 0.96245 0.98262 0.91642 1.21147 0.97137 0.92627 1.01080 1.74807 1.15177 1.04170 1.14762 1.85276 1.51786 1.24833 1.36280 0.92633 0.95480 0.95739 0.88838 0.87969 0.83375 0.83592 0.72614 0.83784 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.53 -13.69 9.11 -34.44 -0.31 -14.01 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.66 4.95 -27.89 -0.14 0.52 16 10 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 11 C 0.22 3.99 7.75 -12.99 -0.10 3.89 16 12 N -0.49 -8.75 11.24 -9.89 -0.11 -8.86 16 13 C 0.19 3.18 7.79 -156.12 -1.22 1.96 16 14 C 0.03 0.43 5.88 -104.81 -0.62 -0.18 16 15 C -0.09 -1.08 9.68 -39.32 -0.38 -1.46 16 16 C -0.06 -0.60 9.60 -39.22 -0.38 -0.98 16 17 C -0.12 -1.27 5.88 -104.94 -0.62 -1.89 16 18 C 0.53 5.26 8.27 34.59 0.29 5.55 16 19 O -0.51 -6.40 17.12 -19.24 -0.33 -6.73 16 20 O -0.51 -3.51 12.67 -40.57 -0.51 -4.02 16 21 C -0.05 -0.57 9.58 -39.22 -0.38 -0.95 16 22 C -0.10 -1.17 9.67 -39.33 -0.38 -1.55 16 23 N -0.38 -6.59 11.84 30.96 0.37 -6.23 16 24 O 0.08 1.39 11.29 18.04 0.20 1.59 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 30 H 0.15 1.73 7.86 -52.49 -0.41 1.32 16 31 H 0.15 1.12 7.60 -52.49 -0.40 0.72 16 32 H 0.42 0.98 9.11 45.56 0.42 1.39 16 33 H 0.14 1.33 7.64 -52.49 -0.40 0.93 16 34 H 0.14 1.57 7.86 -52.48 -0.41 1.16 16 LS Contribution 316.41 15.07 4.77 4.77 Total: -1.00 -31.65 316.41 -6.83 -38.48 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -2.44 Total: -1.30 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -4.49 Total: -8.25 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.99 Total: -40.01 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.64 Total: -9.16 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.65 -6.83 -38.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.071 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds