Wall clock time and date at job start Tue Mar 31 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48492 * 109.47256 * 240.00059 * 3 2 1 5 5 H 1.48503 * 109.46819 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47158 * 119.99690 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 N 1.30972 * 126.43496 * 89.99799 * 11 10 9 13 13 C 1.35225 * 105.57717 * 180.02562 * 12 11 10 14 14 C 1.48401 * 126.41362 * 180.02562 * 13 12 11 15 15 C 1.39449 * 119.96634 * 359.72414 * 14 13 12 16 16 C 1.37723 * 120.02725 * 179.76789 * 15 14 13 17 17 C 1.39701 * 119.96880 * 0.51035 * 16 15 14 18 18 C 1.47690 * 120.03204 * 179.77012 * 17 16 15 19 19 O 1.21470 * 120.00291 * 179.97438 * 18 17 16 20 20 O 1.34727 * 119.99625 * 359.97335 * 18 17 16 21 21 C 1.39711 * 119.93804 * 359.74388 * 17 16 15 22 22 C 1.37712 * 119.96585 * 0.02562 * 21 17 16 23 23 N 1.30762 * 107.17079 * 0.02562 * 13 12 11 24 24 O 1.21285 * 110.09744 * 359.70324 * 23 13 12 25 25 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 30 30 H 1.07998 * 119.98400 * 0.02562 * 15 14 13 31 31 H 1.07997 * 120.01141 * 180.25734 * 16 15 14 32 32 H 0.96705 * 116.99268 * 179.97438 * 20 18 17 33 33 H 1.07994 * 120.01207 * 179.97438 * 21 17 16 34 34 H 1.08006 * 119.98014 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 7 1.1021 -5.6412 -1.0522 13 6 0.4699 -6.7351 -0.5702 14 6 -0.1544 -7.8166 -1.3720 15 6 -0.1255 -7.7564 -2.7649 16 6 -0.7003 -8.7617 -3.5103 17 6 -1.3218 -9.8368 -2.8703 18 6 -1.9431 -10.9132 -3.6683 19 8 -2.4829 -11.8480 -3.1113 20 8 -1.9111 -10.8582 -5.0140 21 6 -1.3546 -9.8932 -1.4747 22 6 -0.7749 -8.8888 -0.7320 23 7 0.5116 -6.6615 0.7347 24 8 1.0986 -5.6568 1.0768 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8904 28 1 2.8716 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8894 30 1 0.3514 -6.9230 -3.2593 31 1 -0.6742 -8.7169 -4.5890 32 1 -2.3307 -11.5859 -5.4932 33 1 -1.8351 -10.7235 -0.9788 34 1 -0.7998 -8.9323 0.3469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608182641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:12 Heat of formation + Delta-G solvation = -31.185391 kcal Electronic energy + Delta-G solvation = -20719.179709 eV Core-core repulsion = 17198.035400 eV Total energy + Delta-G solvation = -3521.144309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.62042 -41.52019 -39.92358 -37.19219 -37.07422 -36.21676 -34.52032 -32.78182 -32.28751 -31.58962 -27.75588 -26.92050 -24.96836 -24.18638 -23.57442 -22.51210 -21.77092 -19.32481 -19.22896 -18.89592 -18.49851 -18.24487 -17.14176 -16.72423 -16.49737 -16.21347 -15.64687 -15.52393 -15.09015 -14.66191 -14.45436 -14.32994 -14.28251 -13.78974 -13.47340 -13.24385 -12.92985 -12.77322 -12.65727 -12.56567 -12.45393 -12.10812 -11.96444 -11.91055 -11.82482 -11.35785 -11.09449 -10.54310 -10.23154 -9.99680 -8.18986 -6.30776 -0.91847 0.13612 0.17093 0.97810 1.47712 1.50143 1.57524 1.60657 1.77085 1.94576 2.34077 2.46062 2.61606 2.84652 3.16757 3.61575 3.76681 3.85672 4.00760 4.07073 4.31329 4.38129 4.48714 4.53732 4.58682 4.77994 4.86852 4.93558 5.04053 5.10654 5.24372 5.45346 5.50517 5.54325 5.54799 5.79098 6.14522 6.85100 6.90518 6.99513 7.39485 8.93203 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.002657 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.303280 B =10536.252911 C =11024.971481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.033 3.967 10 C -0.015 4.015 11 C 0.217 3.783 12 N -0.498 5.498 13 C 0.194 3.806 14 C 0.002 3.998 15 C -0.093 4.093 16 C -0.048 4.048 17 C -0.122 4.122 18 C 0.539 3.461 19 O -0.542 6.542 20 O -0.500 6.500 21 C -0.052 4.052 22 C -0.098 4.098 23 N -0.392 5.392 24 O 0.071 5.929 25 H 0.263 0.737 26 H -0.005 1.005 27 H -0.002 1.002 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.147 0.853 31 H 0.173 0.827 32 H 0.436 0.564 33 H 0.157 0.843 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 -19.672 -7.629 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.098 0.902 9 C -0.005 4.005 10 C -0.053 4.053 11 C -0.002 4.002 12 N -0.231 5.231 13 C -0.075 4.075 14 C 0.001 3.999 15 C -0.113 4.113 16 C -0.066 4.066 17 C -0.124 4.124 18 C 0.384 3.616 19 O -0.434 6.434 20 O -0.314 6.314 21 C -0.070 4.070 22 C -0.118 4.118 23 N -0.102 5.102 24 O 0.013 5.987 25 H 0.072 0.928 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.164 0.836 31 H 0.190 0.810 32 H 0.299 0.701 33 H 0.174 0.826 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.427 -20.161 -7.173 21.403 hybrid contribution -0.262 0.733 0.015 0.779 sum -0.689 -19.428 -7.158 20.716 Atomic orbital electron populations 1.70105 1.08078 1.27982 1.51387 1.25991 0.95644 1.03573 0.94608 0.85444 0.78111 0.77734 0.79436 1.18909 1.21663 1.18770 1.21542 0.94208 0.90931 1.50895 0.90242 1.18955 0.94002 0.91866 0.95709 1.20587 0.96721 0.81346 1.06685 1.29545 0.94100 0.97041 0.79558 1.72022 1.16723 1.05220 1.29131 1.24340 0.99605 0.95672 0.87926 1.17851 0.98185 0.90985 0.92921 1.21354 0.98721 0.99804 0.91405 1.21609 0.92504 0.90367 1.02075 1.19354 1.03986 0.95804 0.93296 1.20675 0.75503 0.84008 0.81433 1.90897 1.43668 1.35630 1.73192 1.84517 1.74529 1.53898 1.18457 1.21267 0.95736 0.98070 0.91950 1.21168 0.96915 0.92389 1.01318 1.74785 1.15878 1.04287 1.15240 1.85254 1.52062 1.25093 1.36270 0.92798 0.98681 0.98393 0.86337 0.86420 0.83557 0.80984 0.70092 0.82570 0.83852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.13 13.29 21.45 0.28 -54.85 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 41.73 29.54 68.60 2.03 43.75 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.54 -27.81 9.11 25.60 0.23 -27.57 16 8 H 0.08 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.03 1.60 4.95 29.85 0.15 1.75 16 10 C -0.01 -0.52 5.78 29.85 0.17 -0.35 16 11 C 0.22 7.83 7.75 88.36 0.68 8.52 16 12 N -0.50 -18.02 11.24 -302.54 -3.40 -21.42 16 13 C 0.19 6.53 7.79 137.29 1.07 7.60 16 14 C 0.00 0.06 5.88 -19.99 -0.12 -0.05 16 15 C -0.09 -2.10 9.68 22.44 0.22 -1.88 16 16 C -0.05 -0.83 9.60 22.50 0.22 -0.61 16 17 C -0.12 -2.28 5.88 -20.07 -0.12 -2.39 16 18 C 0.54 9.38 8.27 70.32 0.58 9.96 16 19 O -0.54 -12.48 17.12 19.93 0.34 -12.14 16 20 O -0.50 -5.26 12.67 -56.37 -0.71 -5.97 16 21 C -0.05 -1.02 9.58 22.50 0.22 -0.80 16 22 C -0.10 -2.24 9.67 22.43 0.22 -2.02 16 23 N -0.39 -13.72 11.84 -59.16 -0.70 -14.42 16 24 O 0.07 2.53 11.29 74.62 0.84 3.38 16 25 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 26 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 28 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 29 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 30 H 0.15 3.32 7.86 -2.91 -0.02 3.30 16 31 H 0.17 2.06 7.60 -2.91 -0.02 2.04 16 32 H 0.44 0.62 9.11 -74.05 -0.67 -0.05 16 33 H 0.16 2.66 7.64 -2.91 -0.02 2.64 16 34 H 0.14 3.15 7.86 -2.91 -0.02 3.13 16 Total: -1.00 -68.62 316.41 3.15 -65.47 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 0.49 Total: 3.61 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 3.98 Total: -7.40 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -3.82 Total: -90.69 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.47 Total: -14.74 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -68.62 3.15 -65.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.286 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds