Wall clock time and date at job start Tue Mar 31 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39720 * 119.99944 * 348.83143 * 3 2 1 5 5 C 1.37676 * 119.99996 * 179.71834 * 4 3 2 6 6 C 1.39731 * 119.99723 * 0.56081 * 5 4 3 7 7 C 1.47734 * 120.00040 * 179.69442 * 6 5 4 8 8 O 1.21598 * 120.00239 * 151.13383 * 7 6 5 9 9 N 1.34780 * 120.00149 * 331.13544 * 7 6 5 10 10 C 1.36761 * 120.00072 * 186.91675 * 9 7 6 11 11 H 1.08003 * 119.99864 * 217.09295 * 10 9 7 12 12 C 1.39125 * 119.99827 * 37.09165 * 10 9 7 13 13 N 1.31302 * 120.00201 * 25.98587 * 12 10 9 14 14 Si 1.86797 * 119.99691 * 205.98968 * 12 10 9 15 15 H 1.48502 * 109.47642 * 89.99978 * 14 12 10 16 16 H 1.48504 * 109.47051 * 209.99645 * 14 12 10 17 17 H 1.48501 * 109.47304 * 329.99657 * 14 12 10 18 18 C 1.46500 * 119.99990 * 6.91972 * 9 7 6 19 19 C 1.52993 * 109.47217 * 99.62861 * 18 9 7 20 20 C 1.50701 * 109.46912 * 180.02562 * 19 18 9 21 21 O 1.20826 * 120.00386 * 0.02562 * 20 19 18 22 22 O 1.34236 * 120.00011 * 180.02562 * 20 19 18 23 23 C 1.39725 * 119.99983 * 359.71645 * 6 5 4 24 24 C 1.37673 * 119.99687 * 0.02562 * 23 6 5 25 25 H 1.07995 * 120.00028 * 359.97438 * 4 3 2 26 26 H 1.08001 * 120.00302 * 180.27744 * 5 4 3 27 27 H 0.97005 * 120.00208 * 184.98542 * 13 12 10 28 28 H 1.09001 * 109.46878 * 219.63744 * 18 9 7 29 29 H 1.09004 * 109.46762 * 339.62911 * 18 9 7 30 30 H 1.08994 * 109.47506 * 299.99700 * 19 18 9 31 31 H 1.09004 * 109.47214 * 60.00327 * 19 18 9 32 32 H 0.96695 * 116.99690 * 180.02562 * 22 20 19 33 33 H 1.08001 * 120.00501 * 179.97438 * 23 6 5 34 34 H 1.08008 * 119.99618 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2671 -1.1862 0.2344 5 6 4.6439 -1.1867 0.2286 6 6 5.3420 0.0019 0.0000 7 6 6.8193 0.0027 0.0005 8 8 7.4272 0.8125 -0.6728 9 7 7.4935 -0.8941 0.7474 10 6 8.8535 -0.8054 0.8603 11 1 9.4522 -1.7037 0.8945 12 6 9.4658 0.4418 0.9309 13 7 8.8001 1.4748 1.3934 14 14 11.2350 0.6469 0.3678 15 1 11.2581 0.9935 -1.0760 16 1 11.8800 1.7335 1.1480 17 1 11.9737 -0.6231 0.5838 18 6 6.7693 -1.9639 1.4382 19 6 6.8747 -3.2571 0.6275 20 6 6.1292 -4.3575 1.3379 21 8 5.5706 -4.1305 2.3850 22 8 6.0858 -5.5898 0.8075 23 6 4.6428 1.1899 -0.2286 24 6 3.2661 1.1893 -0.2281 25 1 2.7275 -2.1039 0.4159 26 1 5.1843 -2.1049 0.4053 27 1 9.2012 2.3578 1.3756 28 1 7.2039 -2.1178 2.4260 29 1 5.7208 -1.6846 1.5422 30 1 6.4400 -3.1033 -0.3601 31 1 7.9232 -3.5365 0.5236 32 1 5.5952 -6.2624 1.2994 33 1 5.1823 2.1087 -0.4049 34 1 2.7256 2.1076 -0.4044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185534.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:03 Heat of formation + Delta-G solvation = -47.922854 kcal Electronic energy + Delta-G solvation = -22331.328459 eV Core-core repulsion = 18809.458359 eV Total energy + Delta-G solvation = -3521.870100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.69395 -40.84111 -39.38651 -37.41565 -37.20697 -36.54397 -34.51303 -32.31080 -32.22243 -31.69592 -27.45341 -26.14585 -24.69843 -23.76944 -22.06334 -21.41818 -20.09746 -19.09145 -18.94176 -17.96628 -17.33258 -16.94936 -16.82869 -16.41760 -15.93453 -15.59547 -15.34623 -15.11790 -14.99525 -14.78493 -14.14776 -14.09046 -13.85384 -13.74296 -13.43555 -13.36281 -13.10196 -12.81010 -12.77881 -12.53901 -12.42825 -12.18716 -12.06707 -11.64234 -11.53623 -10.86311 -10.25720 -9.96874 -9.79522 -9.29543 -8.28502 -5.95125 -0.46475 0.34649 1.27214 1.43199 1.51950 1.56062 1.57658 1.70001 2.08541 2.31807 2.54366 2.78145 2.89728 3.20843 3.27009 3.78836 3.89005 3.95705 3.97736 4.08214 4.27684 4.44153 4.54036 4.62227 4.68299 4.83647 4.98662 5.10428 5.16827 5.23838 5.41781 5.51781 5.69430 5.74168 6.12271 6.39750 6.93499 7.08659 7.14125 7.57131 8.23229 8.79716 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.006436 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.920458 B = 4349.795169 C = 6269.680417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.286 3.714 3 C -0.028 4.028 4 C -0.059 4.059 5 C -0.132 4.132 6 C -0.086 4.086 7 C 0.490 3.510 8 O -0.585 6.585 9 N -0.444 5.444 10 C -0.364 4.364 11 H 0.098 0.902 12 C 0.029 3.971 13 N -0.859 5.859 14 Si 0.964 3.036 15 H -0.290 1.290 16 H -0.287 1.287 17 H -0.250 1.250 18 C 0.078 3.922 19 C -0.133 4.133 20 C 0.497 3.503 21 O -0.541 6.541 22 O -0.509 6.509 23 C -0.087 4.087 24 C -0.059 4.059 25 H 0.164 0.836 26 H 0.167 0.833 27 H 0.263 0.737 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.429 0.571 33 H 0.123 0.877 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 -10.221 -1.657 12.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.028 4.028 3 C -0.032 4.032 4 C -0.079 4.079 5 C -0.150 4.150 6 C -0.091 4.091 7 C 0.280 3.720 8 O -0.468 6.468 9 N -0.163 5.163 10 C -0.491 4.491 11 H 0.116 0.884 12 C -0.179 4.179 13 N -0.493 5.493 14 Si 0.789 3.211 15 H -0.217 1.217 16 H -0.213 1.213 17 H -0.173 1.173 18 C -0.045 4.045 19 C -0.171 4.171 20 C 0.340 3.660 21 O -0.432 6.432 22 O -0.323 6.323 23 C -0.107 4.107 24 C -0.079 4.079 25 H 0.182 0.818 26 H 0.184 0.816 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.291 0.709 33 H 0.141 0.859 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.750 -9.318 -1.784 12.906 hybrid contribution 1.269 0.255 0.253 1.319 sum -7.481 -9.063 -1.530 11.851 Atomic orbital electron populations 1.81261 1.12851 1.08662 1.10398 1.25598 0.92316 0.92532 0.92393 1.16058 0.83697 0.95728 1.07678 1.21336 0.93106 0.97665 0.95830 1.22263 0.94654 0.98810 0.99302 1.20532 0.93556 0.95685 0.99304 1.18452 0.86857 0.84528 0.82126 1.90572 1.70248 1.41135 1.44815 1.43330 1.06266 1.25828 1.40886 1.19434 0.81653 0.93744 1.54268 0.88418 1.25937 1.02484 0.95836 0.93660 1.69971 1.41535 1.00498 1.37331 0.85407 0.79418 0.78584 0.77738 1.21699 1.21338 1.17303 1.22375 0.99928 0.86745 0.95487 1.21767 1.03449 0.90782 1.01118 1.23143 0.76954 0.83243 0.82683 1.90740 1.44724 1.83346 1.24352 1.84509 1.71550 1.20712 1.55501 1.21117 0.93981 0.97526 0.98036 1.21223 0.92634 0.97803 0.96234 0.81840 0.81610 0.92758 0.91696 0.86846 0.85909 0.86198 0.70921 0.85854 0.82194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.54 18.54 19.00 0.35 -12.19 16 2 C 0.29 6.79 15.32 88.33 1.35 8.14 16 3 C -0.03 -0.63 5.73 -21.32 -0.12 -0.76 16 4 C -0.06 -1.30 9.73 22.50 0.22 -1.09 16 5 C -0.13 -3.68 7.51 22.50 0.17 -3.51 16 6 C -0.09 -3.16 5.63 -20.05 -0.11 -3.27 16 7 C 0.49 23.37 6.66 86.75 0.58 23.95 16 8 O -0.58 -33.23 14.46 -4.02 -0.06 -33.29 16 9 N -0.44 -20.24 2.57 -638.95 -1.64 -21.88 16 10 C -0.36 -18.44 9.18 84.14 0.77 -17.67 16 11 H 0.10 4.56 7.96 -2.91 -0.02 4.54 16 12 C 0.03 1.55 4.12 84.99 0.35 1.90 16 13 N -0.86 -49.52 11.89 21.69 0.26 -49.26 16 14 Si 0.96 43.04 29.63 68.60 2.03 45.08 16 15 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 16 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 18 C 0.08 2.70 4.13 86.38 0.36 3.05 16 19 C -0.13 -3.44 5.13 29.85 0.15 -3.29 16 20 C 0.50 11.24 8.11 71.24 0.58 11.82 16 21 O -0.54 -15.24 16.74 21.96 0.37 -14.87 16 22 O -0.51 -8.12 13.42 -51.48 -0.69 -8.81 16 23 C -0.09 -2.86 9.58 22.50 0.22 -2.64 16 24 C -0.06 -1.43 9.73 22.49 0.22 -1.21 16 25 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 26 H 0.17 4.30 2.46 -2.91 -0.01 4.29 16 27 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 28 H 0.06 2.42 8.07 -2.39 -0.02 2.40 16 29 H 0.11 3.68 3.76 -5.93 -0.02 3.66 16 30 H 0.12 2.83 7.24 -2.39 -0.02 2.81 16 31 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.43 2.92 9.10 -74.06 -0.67 2.25 16 33 H 0.12 4.45 7.90 -2.91 -0.02 4.42 16 34 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -72.93 308.19 5.85 -67.09 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.50 Total: 12.69 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 4.73 Total: 15.43 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.03 Total: -83.32 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -0.38 Total: -56.97 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.08 kcal Total: -72.93 5.85 -67.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185534.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.165 kcal (2) G-P(sol) polarization free energy of solvation -72.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds