Wall clock time and date at job start Tue Mar 31 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 120.00178 * 2 1 4 4 H 1.48501 * 109.46517 * 239.99661 * 3 2 1 5 5 H 1.48503 * 109.47107 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47194 * 119.99522 * 3 2 1 7 7 C 1.39935 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00080 * 196.79237 * 7 2 1 9 9 C 1.41410 * 119.99787 * 16.79155 * 7 2 1 10 10 C 1.40779 * 120.20699 * 205.14271 * 9 7 2 11 11 C 1.37651 * 119.89283 * 180.02562 * 10 9 7 12 12 C 1.38527 * 120.31858 * 359.74402 * 11 10 9 13 13 C 1.39267 * 120.42719 * 0.51188 * 12 11 10 14 14 N 1.39855 * 119.94881 * 179.75956 * 13 12 11 15 15 C 1.34774 * 119.99866 * 325.53737 * 14 13 12 16 16 O 1.21511 * 120.00023 * 354.88981 * 15 14 13 17 17 C 1.48285 * 119.99618 * 174.89022 * 15 14 13 18 18 C 1.42288 * 126.94093 * 179.97438 * 17 15 14 19 19 C 1.35308 * 103.92495 * 179.72234 * 18 17 15 20 20 C 1.50704 * 126.66333 * 180.22629 * 19 18 17 21 21 O 1.42901 * 109.47039 * 90.00437 * 20 19 18 22 22 O 1.34021 * 106.66955 * 0.26045 * 19 18 17 23 23 N 1.20896 * 111.85027 * 0.02562 * 22 19 18 24 24 C 1.38302 * 120.10207 * 359.48972 * 13 12 11 25 25 H 0.97006 * 119.99724 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.05359 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.83974 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.77980 * 180.25302 * 12 11 10 29 29 H 0.96996 * 119.99451 * 145.53163 * 14 13 12 30 30 H 1.08005 * 128.03796 * 359.97438 * 18 17 15 31 31 H 1.09004 * 109.46585 * 209.99724 * 20 19 18 32 32 H 1.08993 * 109.46854 * 330.00042 * 20 19 18 33 33 H 0.96700 * 114.00059 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.16441 * 180.22933 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2318 0.2708 9 6 1.3460 -2.4106 -0.3527 10 6 1.8186 -3.6478 0.1246 11 6 1.1696 -4.8107 -0.2238 12 6 0.0497 -4.7695 -1.0380 13 6 -0.4261 -3.5534 -1.5220 14 7 -1.5547 -3.5239 -2.3475 15 6 -1.7792 -4.5279 -3.2181 16 8 -0.9554 -5.4110 -3.3526 17 6 -3.0314 -4.5548 -4.0119 18 6 -3.4176 -5.5363 -4.9669 19 6 -4.6284 -5.1128 -5.3976 20 6 -5.5056 -5.7867 -6.4212 21 8 -6.3789 -6.7091 -5.7667 22 8 -4.8956 -3.9774 -4.7378 23 7 -4.0040 -3.6778 -3.9783 24 6 0.2123 -2.3743 -1.1831 25 1 -0.4850 0.8401 -0.0004 26 1 2.6889 -3.6845 0.7630 27 1 1.5326 -5.7593 0.1432 28 1 -0.4552 -5.6868 -1.3026 29 1 -2.1759 -2.7809 -2.2933 30 1 -2.8729 -6.4171 -5.2734 31 1 -6.0969 -5.0350 -6.9441 32 1 -4.8825 -6.3220 -7.1376 33 1 -6.9741 -7.1801 -6.3659 34 1 -0.1580 -1.4303 -1.5548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624307933.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:17 Heat of formation + Delta-G solvation = 3.721851 kcal Electronic energy + Delta-G solvation = -21331.840104 eV Core-core repulsion = 17812.209487 eV Total energy + Delta-G solvation = -3519.630618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.21844 -39.67307 -37.45279 -37.24591 -34.40326 -34.10772 -33.33041 -32.50382 -29.58471 -28.59527 -27.01184 -25.31587 -24.75973 -22.81579 -21.32671 -20.83432 -19.47612 -18.40951 -17.93505 -17.46084 -17.37151 -16.79879 -15.80708 -15.27966 -14.99692 -14.82360 -14.72240 -14.39325 -13.90121 -13.68267 -13.12404 -12.81609 -12.46195 -12.37724 -11.80991 -11.67788 -11.31813 -11.12727 -10.81986 -10.71925 -10.65249 -10.48657 -10.20836 -9.84995 -9.78569 -9.65156 -9.27556 -9.04575 -7.41522 -7.07263 -6.72156 -4.39115 0.97725 1.47503 2.64649 2.69744 2.87715 3.06138 3.09033 3.20907 3.27359 3.51826 3.87971 3.92514 4.08503 4.42235 4.60957 4.62896 4.80433 4.90118 5.23495 5.27809 5.63983 5.69497 6.23736 6.58085 6.61573 6.82271 6.99144 7.03452 7.05491 7.22190 7.53426 7.59265 7.84350 7.89956 7.99699 8.09045 8.26425 8.44050 8.64640 8.86446 8.91719 10.17717 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.003491 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.857193 B = 8019.503660 C = 8923.337690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.463 4.463 8 H 0.079 0.921 9 C 0.121 3.879 10 C -0.225 4.225 11 C -0.084 4.084 12 C -0.227 4.227 13 C 0.141 3.859 14 N -0.644 5.644 15 C 0.588 3.412 16 O -0.507 6.507 17 C -0.021 4.021 18 C -0.153 4.153 19 C -0.049 4.049 20 C 0.163 3.837 21 O -0.565 6.565 22 O 0.131 5.869 23 N -0.323 5.323 24 C -0.177 4.177 25 H 0.280 0.720 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.409 0.591 30 H 0.183 0.817 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.391 0.609 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.646 -6.745 -12.555 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.245 4.245 11 C -0.103 4.103 12 C -0.248 4.248 13 C 0.050 3.950 14 N -0.288 5.288 15 C 0.372 3.628 16 O -0.381 6.381 17 C -0.180 4.180 18 C -0.176 4.176 19 C -0.112 4.112 20 C 0.084 3.916 21 O -0.372 6.372 22 O 0.053 5.947 23 N -0.022 5.022 24 C -0.199 4.199 25 H 0.091 0.909 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.244 0.756 30 H 0.201 0.799 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.240 0.760 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.096 -5.881 -11.381 16.948 hybrid contribution -0.024 0.306 -0.714 0.777 sum -11.120 -5.575 -12.095 17.349 Atomic orbital electron populations 1.69802 1.07552 1.29255 1.35705 1.25899 0.94759 1.01291 0.92183 0.86355 0.80121 0.80193 0.79976 1.18866 1.20375 1.18985 1.19511 0.97806 0.90938 1.40990 0.90275 1.17356 0.90491 0.92254 0.88151 1.21064 1.03836 0.92841 1.06788 1.20412 0.95470 0.96715 0.97714 1.20289 1.02138 0.95390 1.07025 1.17599 0.88152 0.95391 0.93884 1.43309 1.25705 1.23245 1.36516 1.16859 0.83413 0.83149 0.79381 1.90810 1.44195 1.37274 1.65781 1.23694 0.97416 0.94883 1.02022 1.22495 0.95854 1.01571 0.97646 1.23989 0.96805 0.89992 1.00448 1.20232 0.91108 0.91397 0.88813 1.86562 1.53808 1.58149 1.38673 1.84783 1.36218 1.34528 1.39214 1.74221 0.98091 1.21452 1.08438 1.21085 0.99812 0.95258 1.03720 0.90863 0.88682 0.88831 0.88082 0.75583 0.79942 0.90699 0.89600 0.76049 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.41 10.94 55.55 0.61 -19.80 16 2 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 3 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.27 9.06 -37.74 -0.34 -12.62 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.12 3.25 5.57 -106.85 -0.59 2.65 16 10 C -0.23 -5.65 9.79 -38.84 -0.38 -6.03 16 11 C -0.08 -2.00 10.02 -39.69 -0.40 -2.39 16 12 C -0.23 -5.55 8.66 -39.09 -0.34 -5.89 16 13 C 0.14 3.45 6.25 -83.79 -0.52 2.92 16 14 N -0.64 -13.55 5.33 -10.64 -0.06 -13.60 16 15 C 0.59 11.77 7.57 -12.13 -0.09 11.68 16 16 O -0.51 -11.35 14.69 5.36 0.08 -11.27 16 17 C -0.02 -0.34 7.19 -82.53 -0.59 -0.94 16 18 C -0.15 -1.98 10.92 -39.07 -0.43 -2.41 16 19 C -0.05 -0.53 7.10 -35.35 -0.25 -0.78 16 20 C 0.16 0.97 7.60 36.01 0.27 1.25 16 21 O -0.56 -3.94 13.64 -35.23 -0.48 -4.42 16 22 O 0.13 1.71 11.18 17.23 0.19 1.90 16 23 N -0.32 -5.04 11.85 33.29 0.39 -4.65 16 24 C -0.18 -4.64 8.60 -38.68 -0.33 -4.98 16 25 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 26 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 27 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.10 2.42 6.47 -52.49 -0.34 2.08 16 29 H 0.41 7.86 8.58 -40.82 -0.35 7.51 16 30 H 0.18 2.00 8.06 -52.48 -0.42 1.58 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.39 0.52 9.12 45.56 0.42 0.94 16 34 H 0.12 3.28 6.17 -52.49 -0.32 2.96 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -32.50 309.02 -5.99 -38.49 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -2.26 Total: 10.76 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -4.09 Total: -15.73 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.95 Total: -38.05 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.21 Total: -13.78 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.50 -5.99 -38.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624307933.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.211 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds