Wall clock time and date at job start Tue Mar 31 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 120.00178 * 2 1 4 4 H 1.48501 * 109.46517 * 239.99661 * 3 2 1 5 5 H 1.48503 * 109.47107 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47194 * 119.99522 * 3 2 1 7 7 C 1.39935 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00080 * 196.79237 * 7 2 1 9 9 C 1.41410 * 119.99787 * 16.79155 * 7 2 1 10 10 C 1.40779 * 120.20699 * 205.14271 * 9 7 2 11 11 C 1.37651 * 119.89283 * 180.02562 * 10 9 7 12 12 C 1.38527 * 120.31858 * 359.74402 * 11 10 9 13 13 C 1.39267 * 120.42719 * 0.51188 * 12 11 10 14 14 N 1.39855 * 119.94881 * 179.75956 * 13 12 11 15 15 C 1.34774 * 119.99866 * 325.53737 * 14 13 12 16 16 O 1.21511 * 120.00023 * 354.88981 * 15 14 13 17 17 C 1.48285 * 119.99618 * 174.89022 * 15 14 13 18 18 C 1.42288 * 126.94093 * 179.97438 * 17 15 14 19 19 C 1.35308 * 103.92495 * 179.72234 * 18 17 15 20 20 C 1.50704 * 126.66333 * 180.22629 * 19 18 17 21 21 O 1.42901 * 109.47039 * 90.00437 * 20 19 18 22 22 O 1.34021 * 106.66955 * 0.26045 * 19 18 17 23 23 N 1.20896 * 111.85027 * 0.02562 * 22 19 18 24 24 C 1.38302 * 120.10207 * 359.48972 * 13 12 11 25 25 H 0.97006 * 119.99724 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.05359 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.83974 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.77980 * 180.25302 * 12 11 10 29 29 H 0.96996 * 119.99451 * 145.53163 * 14 13 12 30 30 H 1.08005 * 128.03796 * 359.97438 * 18 17 15 31 31 H 1.09004 * 109.46585 * 209.99724 * 20 19 18 32 32 H 1.08993 * 109.46854 * 330.00042 * 20 19 18 33 33 H 0.96700 * 114.00059 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.16441 * 180.22933 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2318 0.2708 9 6 1.3460 -2.4106 -0.3527 10 6 1.8186 -3.6478 0.1246 11 6 1.1696 -4.8107 -0.2238 12 6 0.0497 -4.7695 -1.0380 13 6 -0.4261 -3.5534 -1.5220 14 7 -1.5547 -3.5239 -2.3475 15 6 -1.7792 -4.5279 -3.2181 16 8 -0.9554 -5.4110 -3.3526 17 6 -3.0314 -4.5548 -4.0119 18 6 -3.4176 -5.5363 -4.9669 19 6 -4.6284 -5.1128 -5.3976 20 6 -5.5056 -5.7867 -6.4212 21 8 -6.3789 -6.7091 -5.7667 22 8 -4.8956 -3.9774 -4.7378 23 7 -4.0040 -3.6778 -3.9783 24 6 0.2123 -2.3743 -1.1831 25 1 -0.4850 0.8401 -0.0004 26 1 2.6889 -3.6845 0.7630 27 1 1.5326 -5.7593 0.1432 28 1 -0.4552 -5.6868 -1.3026 29 1 -2.1759 -2.7809 -2.2933 30 1 -2.8729 -6.4171 -5.2734 31 1 -6.0969 -5.0350 -6.9441 32 1 -4.8825 -6.3220 -7.1376 33 1 -6.9741 -7.1801 -6.3659 34 1 -0.1580 -1.4303 -1.5548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624307933.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:16 Heat of formation + Delta-G solvation = -20.241472 kcal Electronic energy + Delta-G solvation = -21332.879232 eV Core-core repulsion = 17812.209487 eV Total energy + Delta-G solvation = -3520.669745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.33716 -41.36584 -39.10073 -37.92223 -36.19214 -35.40169 -35.02778 -33.49453 -31.53708 -30.42111 -27.69777 -27.25668 -26.15425 -23.97917 -23.20272 -22.49974 -21.09331 -19.37050 -19.25782 -18.96686 -18.15250 -18.11616 -17.58741 -16.81814 -16.59215 -16.17093 -15.93149 -15.72669 -15.23864 -14.99822 -14.59468 -14.47805 -14.23581 -13.57755 -13.19429 -13.08763 -12.86543 -12.79799 -12.66246 -12.42288 -11.99415 -11.69471 -11.64546 -11.46138 -11.13671 -11.03321 -10.89425 -10.81558 -9.39976 -8.97441 -8.61285 -6.40000 -0.18624 0.39658 0.88767 1.00639 1.38420 1.49202 1.52728 1.68986 1.90168 1.94132 2.20002 2.68895 2.73374 3.26020 3.65225 3.70089 3.86290 3.95814 4.13971 4.40888 4.52831 4.60276 4.63760 4.76148 4.77619 4.95903 5.07850 5.11853 5.28641 5.65761 5.73046 5.94504 6.02777 6.19829 6.37303 6.59272 6.78735 6.88352 6.89651 6.92464 6.97750 8.30489 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.003491 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.857193 B = 8019.503660 C = 8923.337690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.036 3.964 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.093 3.907 10 C -0.242 4.242 11 C -0.080 4.080 12 C -0.241 4.241 13 C 0.143 3.857 14 N -0.647 5.647 15 C 0.591 3.409 16 O -0.535 6.535 17 C -0.050 4.050 18 C -0.163 4.163 19 C -0.029 4.029 20 C 0.163 3.837 21 O -0.591 6.591 22 O 0.144 5.856 23 N -0.341 5.341 24 C -0.200 4.200 25 H 0.289 0.711 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.104 0.896 29 H 0.415 0.585 30 H 0.200 0.800 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.415 0.585 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 -6.905 -13.991 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.525 4.525 8 H 0.099 0.901 9 C 0.090 3.910 10 C -0.262 4.262 11 C -0.098 4.098 12 C -0.261 4.261 13 C 0.051 3.949 14 N -0.291 5.291 15 C 0.377 3.623 16 O -0.410 6.410 17 C -0.207 4.207 18 C -0.186 4.186 19 C -0.092 4.092 20 C 0.085 3.915 21 O -0.402 6.402 22 O 0.061 5.939 23 N -0.038 5.038 24 C -0.222 4.222 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.144 0.856 28 H 0.122 0.878 29 H 0.251 0.749 30 H 0.217 0.783 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.268 0.732 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.191 -6.059 -12.819 18.699 hybrid contribution 0.156 0.266 -0.346 0.463 sum -12.035 -5.794 -13.165 18.754 Atomic orbital electron populations 1.69857 1.08974 1.30685 1.35354 1.26780 0.95557 1.04543 0.91091 0.85221 0.78757 0.75489 0.80066 1.18665 1.19184 1.18186 1.19802 0.98180 0.91992 1.42481 0.90072 1.17768 0.91143 0.93418 0.88678 1.21272 1.04651 0.92808 1.07465 1.20751 0.94705 0.97729 0.96651 1.20473 1.02758 0.95402 1.07516 1.17694 0.88633 0.94983 0.93607 1.43299 1.25031 1.24100 1.36649 1.17248 0.84268 0.81975 0.78795 1.90772 1.45578 1.38031 1.66644 1.23336 0.96618 0.97139 1.03599 1.22751 0.96913 1.01657 0.97230 1.24903 0.96614 0.88331 0.99375 1.20593 0.91501 0.92222 0.87140 1.86479 1.54616 1.58641 1.40510 1.84753 1.35152 1.35418 1.38550 1.74223 0.98357 1.21828 1.09367 1.21014 1.00762 0.95351 1.05062 0.90046 0.87425 0.85606 0.87791 0.74882 0.78326 0.87838 0.86386 0.73185 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.87 10.94 21.82 0.24 -42.63 16 2 C 0.04 1.79 5.16 85.25 0.44 2.23 16 3 Si 0.98 38.19 29.59 68.60 2.03 40.22 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 6 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 7 C -0.50 -26.88 9.06 23.46 0.21 -26.67 16 8 H 0.08 4.21 7.90 -2.91 -0.02 4.18 16 9 C 0.09 5.16 5.57 -21.31 -0.12 5.04 16 10 C -0.24 -12.33 9.79 22.75 0.22 -12.11 16 11 C -0.08 -3.78 10.02 22.20 0.22 -3.56 16 12 C -0.24 -11.92 8.66 22.59 0.20 -11.72 16 13 C 0.14 7.22 6.25 38.12 0.24 7.46 16 14 N -0.65 -28.13 5.33 -305.87 -1.63 -29.76 16 15 C 0.59 24.17 7.57 86.92 0.66 24.83 16 16 O -0.53 -24.37 14.69 -3.75 -0.06 -24.43 16 17 C -0.05 -1.64 7.19 42.95 0.31 -1.33 16 18 C -0.16 -3.98 10.92 22.60 0.25 -3.73 16 19 C -0.03 -0.55 7.10 25.01 0.18 -0.37 16 20 C 0.16 1.29 7.60 71.24 0.54 1.83 16 21 O -0.59 -6.19 13.64 -148.98 -2.03 -8.22 16 22 O 0.14 3.51 11.18 71.84 0.80 4.32 16 23 N -0.34 -10.53 11.85 -49.51 -0.59 -11.12 16 24 C -0.20 -10.90 8.60 22.85 0.20 -10.70 16 25 H 0.29 13.61 8.30 -92.70 -0.77 12.84 16 26 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 27 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 28 H 0.10 5.04 6.47 -2.91 -0.02 5.02 16 29 H 0.41 16.66 8.58 -92.71 -0.80 15.86 16 30 H 0.20 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.41 -0.40 9.12 -74.06 -0.68 -1.07 16 34 H 0.11 6.19 6.17 -2.91 -0.02 6.18 16 Total: -1.00 -72.23 309.02 2.02 -70.21 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -0.29 Total: 30.20 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 3.54 Total: -28.79 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.98 Total: -83.50 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -1.28 Total: -28.33 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -72.23 2.02 -70.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624307933.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.967 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds