Wall clock time and date at job start Tue Mar 31 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.35930 * 122.56010 * 2 1 4 4 C 1.31753 * 114.69147 * 179.76172 * 3 2 1 5 5 S 1.75883 * 109.44953 * 0.47179 * 4 3 2 6 6 C 1.34377 * 122.56034 * 180.28383 * 2 1 3 7 7 N 1.33151 * 125.05767 * 359.97438 * 6 2 1 8 8 C 1.33586 * 120.00264 * 179.97438 * 7 6 2 9 9 O 1.22007 * 119.99842 * 0.02562 * 8 7 6 10 10 C 1.47674 * 120.00212 * 180.02562 * 8 7 6 11 11 C 1.39175 * 120.28102 * 357.31348 * 10 8 7 12 12 C 1.38151 * 120.10353 * 179.97438 * 11 10 8 13 13 C 1.38885 * 120.67834 * 0.04483 * 12 11 10 14 14 C 1.37513 * 120.56108 * 359.97438 * 13 12 11 15 15 C 1.40753 * 119.87274 * 359.66441 * 14 13 12 16 16 C 1.40854 * 120.33112 * 180.34018 * 15 14 13 17 17 H 1.08001 * 120.00136 * 214.91614 * 16 15 14 18 18 C 1.40221 * 119.99993 * 34.91556 * 16 15 14 19 19 N 1.30666 * 119.99605 * 10.00784 * 18 16 15 20 20 Si 1.86798 * 119.99902 * 190.00518 * 18 16 15 21 21 H 1.48495 * 109.47400 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46976 * 120.00326 * 20 18 16 23 23 H 1.48500 * 109.46829 * 239.99885 * 20 18 16 24 24 H 1.09002 * 109.47358 * 269.71262 * 1 2 3 25 25 H 1.08997 * 109.47433 * 149.71266 * 1 2 3 26 26 H 1.09004 * 109.47152 * 29.71489 * 1 2 3 27 27 H 1.07998 * 122.65299 * 359.97438 * 3 2 1 28 28 H 1.07996 * 125.27299 * 180.21066 * 4 3 2 29 29 H 1.08007 * 119.94898 * 0.02562 * 11 10 8 30 30 H 1.07998 * 119.66062 * 180.02562 * 12 11 10 31 31 H 1.07988 * 119.71977 * 179.97438 * 13 12 11 32 32 H 1.07995 * 120.06586 * 180.02562 * 14 13 12 33 33 H 0.96998 * 119.99629 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1965 1.1457 0.0000 4 6 3.5016 0.9653 0.0050 5 16 3.8547 -0.7577 -0.0036 6 6 2.1881 -1.1325 -0.0056 7 7 1.6811 -2.3637 -0.0112 8 6 2.4964 -3.4219 -0.0170 9 8 3.7057 -3.2602 -0.0167 10 6 1.9341 -4.7874 -0.0238 11 6 0.5568 -4.9794 0.0321 12 6 0.0347 -6.2584 0.0250 13 6 0.8715 -7.3651 -0.0368 14 6 2.2365 -7.2073 -0.0925 15 6 2.7933 -5.9146 -0.0943 16 6 4.1897 -5.7417 -0.1584 17 1 4.6575 -4.9248 0.3709 18 6 4.9724 -6.6302 -0.9095 19 7 4.3990 -7.4949 -1.7037 20 14 6.8348 -6.5774 -0.7747 21 1 7.2317 -5.5167 0.1857 22 1 7.3337 -7.8911 -0.2947 23 1 7.4193 -6.2829 -2.1077 24 1 -0.3634 -0.0052 1.0276 25 1 -0.3634 -0.8873 -0.5183 26 1 -0.3634 0.8926 -0.5094 27 1 1.7437 2.1261 -0.0004 28 1 4.2400 1.7533 0.0090 29 1 -0.1049 -4.1272 0.0803 30 1 -1.0352 -6.3992 0.0682 31 1 0.4468 -8.3579 -0.0410 32 1 2.8797 -8.0735 -0.1408 33 1 4.9405 -8.1093 -2.2236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627174089.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:43 Heat of formation + Delta-G solvation = 51.630063 kcal Electronic energy + Delta-G solvation = -19797.119769 eV Core-core repulsion = 16722.319479 eV Total energy + Delta-G solvation = -3074.800291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29782 -38.67836 -36.77611 -33.73403 -33.11492 -31.56309 -29.95020 -29.48810 -27.38241 -25.43863 -24.26861 -22.27046 -20.86529 -19.94702 -19.54502 -17.50073 -17.21295 -16.32585 -15.81376 -15.53258 -15.22176 -14.75859 -14.08159 -13.85368 -13.63075 -13.49990 -13.02762 -12.69056 -12.46889 -12.38745 -12.21648 -11.55431 -11.11733 -10.98984 -10.86849 -10.58721 -10.40669 -10.27705 -9.95556 -9.58956 -9.23207 -9.20199 -9.17933 -8.16006 -7.59173 -7.27528 -7.17490 -6.75642 -4.32112 1.25131 1.56082 1.98305 2.20845 2.68027 2.75065 2.93280 3.13070 3.23274 3.29295 4.01302 4.43473 4.61080 4.81565 4.87642 5.12527 5.25503 5.48374 5.61580 5.65079 5.74942 6.27403 6.36516 6.53016 6.62069 6.71592 7.05190 7.17402 7.22389 7.33567 7.61174 7.79093 7.90108 8.05574 8.14225 8.31071 8.74275 8.88596 8.96899 9.41681 10.19603 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.006134 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.888715 B = 4563.415442 C = 6131.948776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.487 5.487 3 C 0.065 3.935 4 C -0.328 4.328 5 S 0.206 5.794 6 C 0.337 3.663 7 N -0.607 5.607 8 C 0.524 3.476 9 O -0.527 6.527 10 C -0.234 4.234 11 C -0.033 4.033 12 C -0.252 4.252 13 C -0.094 4.094 14 C -0.152 4.152 15 C 0.142 3.858 16 C -0.418 4.418 17 H 0.111 0.889 18 C 0.068 3.932 19 N -0.791 5.791 20 Si 0.914 3.086 21 H -0.256 1.256 22 H -0.273 1.273 23 H -0.274 1.274 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.177 0.823 28 H 0.174 0.826 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 14.357 2.045 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.185 5.185 3 C -0.065 4.065 4 C -0.468 4.468 5 S 0.453 5.547 6 C -0.035 4.035 7 N -0.363 5.363 8 C 0.319 3.681 9 O -0.411 6.411 10 C -0.239 4.239 11 C -0.052 4.052 12 C -0.272 4.272 13 C -0.113 4.113 14 C -0.171 4.171 15 C 0.137 3.863 16 C -0.446 4.446 17 H 0.128 0.872 18 C -0.150 4.150 19 N -0.416 5.416 20 Si 0.739 3.261 21 H -0.179 1.179 22 H -0.199 1.199 23 H -0.199 1.199 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.194 0.806 28 H 0.191 0.809 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.805 13.122 1.870 13.549 hybrid contribution -0.080 0.893 -0.193 0.917 sum -2.885 14.015 1.678 14.407 Atomic orbital electron populations 1.22009 0.75989 1.04608 1.03477 1.43520 1.08383 1.02648 1.63943 1.20616 0.91738 0.90767 1.03427 1.25938 0.98647 1.06385 1.15796 1.86232 1.01485 0.92749 1.74252 1.24209 0.94615 0.91380 0.93315 1.68981 1.37575 0.94572 1.35204 1.19397 0.84786 0.88245 0.75641 1.90534 1.17695 1.85153 1.47749 1.19070 0.93039 0.90113 1.21653 1.20781 0.94020 0.95676 0.94687 1.20361 0.97295 0.92912 1.16591 1.20795 0.94291 0.96619 0.99587 1.21263 0.93394 0.97379 1.05076 1.17568 0.93021 0.89784 0.85897 1.20357 0.91695 1.09444 1.23089 0.87157 1.26157 1.01895 0.93172 0.93766 1.69759 1.38465 1.15255 1.18140 0.86143 0.81597 0.79088 0.79316 1.17906 1.19869 1.19923 0.91073 0.88516 0.90277 0.80593 0.80878 0.87956 0.89208 0.89209 0.86751 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.70 59.84 0.64 1.47 16 2 N -0.49 -6.49 3.02 -127.20 -0.38 -6.88 16 3 C 0.07 0.67 10.68 -17.62 -0.19 0.48 16 4 C -0.33 -3.77 11.17 28.85 0.32 -3.45 16 5 S 0.21 3.53 19.92 -107.50 -2.14 1.39 16 6 C 0.34 6.14 7.65 -88.72 -0.68 5.47 16 7 N -0.61 -13.23 9.02 -14.57 -0.13 -13.36 16 8 C 0.52 13.39 7.64 -12.94 -0.10 13.29 16 9 O -0.53 -14.00 10.78 4.91 0.05 -13.95 16 10 C -0.23 -6.24 5.93 -104.29 -0.62 -6.86 16 11 C -0.03 -0.79 9.57 -39.27 -0.38 -1.17 16 12 C -0.25 -5.80 10.03 -39.37 -0.39 -6.20 16 13 C -0.09 -2.24 10.01 -39.61 -0.40 -2.63 16 14 C -0.15 -4.03 8.62 -38.90 -0.34 -4.36 16 15 C 0.14 3.98 5.49 -106.55 -0.58 3.39 16 16 C -0.42 -11.79 7.78 -37.85 -0.29 -12.08 16 17 H 0.11 3.21 5.71 -52.49 -0.30 2.91 16 18 C 0.07 1.80 5.23 -17.30 -0.09 1.71 16 19 N -0.79 -21.02 11.24 55.56 0.62 -20.40 16 20 Si 0.91 19.94 29.57 -169.99 -5.03 14.91 16 21 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.10 1.14 7.75 -51.93 -0.40 0.73 16 26 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.10 2.24 7.54 -52.48 -0.40 1.85 16 30 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 31 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.11 3.06 6.68 -52.49 -0.35 2.71 16 33 H 0.28 6.75 8.29 -40.82 -0.34 6.42 16 LS Contribution 299.82 15.07 4.52 4.52 Total: -1.00 -32.65 299.82 -8.70 -41.35 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -3.12 Total: 3.35 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -3.09 Total: -10.93 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.11 Total: -40.64 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.05 Total: -13.95 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -2.14 Total: 1.39 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.65 -8.70 -41.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627174089.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.984 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds