Wall clock time and date at job start Tue Mar 31 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.35930 * 122.56010 * 2 1 4 4 C 1.31753 * 114.69147 * 179.76172 * 3 2 1 5 5 S 1.75883 * 109.44953 * 0.47179 * 4 3 2 6 6 C 1.34377 * 122.56034 * 180.28383 * 2 1 3 7 7 N 1.33151 * 125.05767 * 359.97438 * 6 2 1 8 8 C 1.33586 * 120.00264 * 179.97438 * 7 6 2 9 9 O 1.22007 * 119.99842 * 0.02562 * 8 7 6 10 10 C 1.47674 * 120.00212 * 180.02562 * 8 7 6 11 11 C 1.39175 * 120.28102 * 357.31348 * 10 8 7 12 12 C 1.38151 * 120.10353 * 179.97438 * 11 10 8 13 13 C 1.38885 * 120.67834 * 0.04483 * 12 11 10 14 14 C 1.37513 * 120.56108 * 359.97438 * 13 12 11 15 15 C 1.40753 * 119.87274 * 359.66441 * 14 13 12 16 16 C 1.40854 * 120.33112 * 180.34018 * 15 14 13 17 17 H 1.08001 * 120.00136 * 214.91614 * 16 15 14 18 18 C 1.40221 * 119.99993 * 34.91556 * 16 15 14 19 19 N 1.30666 * 119.99605 * 10.00784 * 18 16 15 20 20 Si 1.86798 * 119.99902 * 190.00518 * 18 16 15 21 21 H 1.48495 * 109.47400 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46976 * 120.00326 * 20 18 16 23 23 H 1.48500 * 109.46829 * 239.99885 * 20 18 16 24 24 H 1.09002 * 109.47358 * 269.71262 * 1 2 3 25 25 H 1.08997 * 109.47433 * 149.71266 * 1 2 3 26 26 H 1.09004 * 109.47152 * 29.71489 * 1 2 3 27 27 H 1.07998 * 122.65299 * 359.97438 * 3 2 1 28 28 H 1.07996 * 125.27299 * 180.21066 * 4 3 2 29 29 H 1.08007 * 119.94898 * 0.02562 * 11 10 8 30 30 H 1.07998 * 119.66062 * 180.02562 * 12 11 10 31 31 H 1.07988 * 119.71977 * 179.97438 * 13 12 11 32 32 H 1.07995 * 120.06586 * 180.02562 * 14 13 12 33 33 H 0.96998 * 119.99629 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1965 1.1457 0.0000 4 6 3.5016 0.9653 0.0050 5 16 3.8547 -0.7577 -0.0036 6 6 2.1881 -1.1325 -0.0056 7 7 1.6811 -2.3637 -0.0112 8 6 2.4964 -3.4219 -0.0170 9 8 3.7057 -3.2602 -0.0167 10 6 1.9341 -4.7874 -0.0238 11 6 0.5568 -4.9794 0.0321 12 6 0.0347 -6.2584 0.0250 13 6 0.8715 -7.3651 -0.0368 14 6 2.2365 -7.2073 -0.0925 15 6 2.7933 -5.9146 -0.0943 16 6 4.1897 -5.7417 -0.1584 17 1 4.6575 -4.9248 0.3709 18 6 4.9724 -6.6302 -0.9095 19 7 4.3990 -7.4949 -1.7037 20 14 6.8348 -6.5774 -0.7747 21 1 7.2317 -5.5167 0.1857 22 1 7.3337 -7.8911 -0.2947 23 1 7.4193 -6.2829 -2.1077 24 1 -0.3634 -0.0052 1.0276 25 1 -0.3634 -0.8873 -0.5183 26 1 -0.3634 0.8926 -0.5094 27 1 1.7437 2.1261 -0.0004 28 1 4.2400 1.7533 0.0090 29 1 -0.1049 -4.1272 0.0803 30 1 -1.0352 -6.3992 0.0682 31 1 0.4468 -8.3579 -0.0410 32 1 2.8797 -8.0735 -0.1408 33 1 4.9405 -8.1093 -2.2236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627174089.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:42 Heat of formation + Delta-G solvation = 30.799180 kcal Electronic energy + Delta-G solvation = -19798.023064 eV Core-core repulsion = 16722.319479 eV Total energy + Delta-G solvation = -3075.703585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49613 -40.40173 -38.62586 -35.62936 -34.64452 -32.61554 -31.83660 -31.37375 -28.60242 -27.27955 -25.55985 -23.92164 -22.75464 -21.20100 -21.08780 -19.26549 -18.81686 -17.63190 -17.13314 -17.00739 -16.97449 -16.42169 -15.86770 -15.23145 -14.99792 -14.83392 -14.67947 -14.43978 -14.08363 -13.55270 -13.28985 -13.23607 -12.87821 -12.84436 -12.47168 -12.40334 -12.08011 -11.66432 -11.59647 -11.47576 -11.13036 -10.82497 -10.43288 -9.92589 -9.43845 -9.19756 -8.71180 -8.61280 -6.35077 -0.25268 0.20787 0.74054 1.03216 1.12089 1.15960 1.32738 1.48510 1.49950 1.61912 2.21656 2.59819 2.89877 3.37233 3.77857 4.08785 4.20816 4.47887 4.50404 4.56845 4.64471 4.69517 4.75038 4.85840 5.12869 5.21051 5.28020 5.37630 5.56922 5.66556 5.79284 5.90481 6.11487 6.13584 6.31381 6.40375 6.74273 6.88638 6.99514 7.67802 8.30550 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.006134 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.888715 B = 4563.415442 C = 6131.948776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.474 5.474 3 C 0.079 3.921 4 C -0.313 4.313 5 S 0.143 5.857 6 C 0.327 3.673 7 N -0.635 5.635 8 C 0.516 3.484 9 O -0.560 6.560 10 C -0.259 4.259 11 C -0.037 4.037 12 C -0.244 4.244 13 C -0.090 4.090 14 C -0.179 4.179 15 C 0.111 3.889 16 C -0.457 4.457 17 H 0.088 0.912 18 C 0.030 3.970 19 N -0.823 5.823 20 Si 0.981 3.019 21 H -0.267 1.267 22 H -0.253 1.253 23 H -0.265 1.265 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.129 0.871 27 H 0.242 0.758 28 H 0.212 0.788 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 17.593 2.060 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.169 5.169 3 C -0.050 4.050 4 C -0.452 4.452 5 S 0.390 5.610 6 C -0.044 4.044 7 N -0.394 5.394 8 C 0.309 3.691 9 O -0.446 6.446 10 C -0.264 4.264 11 C -0.055 4.055 12 C -0.263 4.263 13 C -0.109 4.109 14 C -0.198 4.198 15 C 0.108 3.892 16 C -0.486 4.486 17 H 0.106 0.894 18 C -0.184 4.184 19 N -0.449 5.449 20 Si 0.801 3.199 21 H -0.191 1.191 22 H -0.177 1.177 23 H -0.190 1.190 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.147 0.853 27 H 0.258 0.742 28 H 0.229 0.771 29 H 0.140 0.860 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.119 0.881 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.423 16.433 1.887 17.122 hybrid contribution 0.223 0.323 -0.163 0.425 sum -4.199 16.755 1.724 17.359 Atomic orbital electron populations 1.22353 0.73577 1.06034 1.04850 1.44063 1.10034 1.01907 1.60915 1.21622 0.91193 0.91662 1.00496 1.26172 1.00185 1.02565 1.16266 1.86450 1.02265 0.98643 1.73615 1.24409 0.95293 0.91918 0.92757 1.68834 1.36682 0.95040 1.38882 1.19469 0.84875 0.89143 0.75635 1.90523 1.18691 1.86171 1.49209 1.19563 0.94352 0.91011 1.21489 1.21042 0.93253 0.97045 0.94209 1.20812 0.99194 0.92019 1.14299 1.21161 0.93281 0.98659 0.97762 1.21233 0.94691 0.96452 1.07411 1.17953 0.93643 0.91030 0.86621 1.20284 0.92538 1.10358 1.25456 0.89434 1.26878 1.06167 0.92521 0.92871 1.69783 1.40109 1.16143 1.18907 0.85186 0.76026 0.79428 0.79223 1.19104 1.17737 1.18974 0.89661 0.90714 0.85321 0.74210 0.77068 0.86014 0.85251 0.85959 0.88107 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 10.70 127.77 1.37 2.55 16 2 N -0.47 -11.06 3.02 -556.36 -1.68 -12.74 16 3 C 0.08 1.19 10.68 83.33 0.89 2.08 16 4 C -0.31 -5.97 11.17 67.09 0.75 -5.22 16 5 S 0.14 4.92 19.92 -56.49 -1.13 3.80 16 6 C 0.33 11.82 7.65 179.68 1.37 13.19 16 7 N -0.63 -28.41 9.02 -318.75 -2.88 -31.29 16 8 C 0.52 27.90 7.64 86.92 0.66 28.56 16 9 O -0.56 -32.02 10.78 -5.34 -0.06 -32.08 16 10 C -0.26 -14.56 5.93 -19.65 -0.12 -14.67 16 11 C -0.04 -1.79 9.57 22.47 0.22 -1.57 16 12 C -0.24 -10.95 10.03 22.40 0.22 -10.72 16 13 C -0.09 -4.28 10.01 22.25 0.22 -4.05 16 14 C -0.18 -9.89 8.62 22.71 0.20 -9.70 16 15 C 0.11 6.66 5.49 -21.12 -0.12 6.54 16 16 C -0.46 -27.79 7.78 23.39 0.18 -27.61 16 17 H 0.09 5.57 5.71 -2.91 -0.02 5.55 16 18 C 0.03 1.68 5.23 85.35 0.45 2.13 16 19 N -0.82 -45.92 11.24 21.87 0.25 -45.67 16 20 Si 0.98 43.02 29.57 68.60 2.03 45.05 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.61 7.75 -2.39 -0.02 1.59 16 26 H 0.13 0.83 8.09 -2.39 -0.02 0.81 16 27 H 0.24 0.69 8.06 -2.91 -0.02 0.66 16 28 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.12 5.31 7.54 -2.91 -0.02 5.29 16 30 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.12 4.91 8.06 -2.92 -0.02 4.88 16 32 H 0.10 5.72 6.68 -2.91 -0.02 5.70 16 33 H 0.29 14.46 8.29 -92.71 -0.77 13.69 16 Total: -1.00 -80.06 299.82 3.98 -76.08 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.14 Total: 15.33 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 6.30 Total: -18.49 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -4.31 Total: -89.69 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.06 Total: -32.08 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -1.13 Total: 3.80 kcal Total: -80.06 3.98 -76.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627174089.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.881 kcal (2) G-P(sol) polarization free energy of solvation -80.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds