Wall clock time and date at job start Tue Mar 31 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31824 * 122.85969 * 2 1 4 4 C 1.28943 * 117.20562 * 180.02562 * 3 2 1 5 5 S 1.70956 * 110.32875 * 359.75945 * 4 3 2 6 6 C 1.34476 * 122.85971 * 180.02562 * 2 1 3 7 7 N 1.39583 * 126.07086 * 359.94081 * 6 2 1 8 8 C 1.34776 * 120.00333 * 179.97438 * 7 6 2 9 9 O 1.21660 * 119.99824 * 0.02562 * 8 7 6 10 10 C 1.47346 * 120.00491 * 180.02562 * 8 7 6 11 11 C 1.39277 * 120.28879 * 355.25237 * 10 8 7 12 12 C 1.38167 * 120.09540 * 180.02562 * 11 10 8 13 13 C 1.38859 * 120.68118 * 0.02562 * 12 11 10 14 14 C 1.37569 * 120.58024 * 359.69435 * 13 12 11 15 15 C 1.40718 * 119.88057 * 0.55959 * 14 13 12 16 16 C 1.40848 * 120.32930 * 179.74359 * 15 14 13 17 17 H 1.07999 * 120.00054 * 216.11476 * 16 15 14 18 18 C 1.40273 * 120.00296 * 36.11697 * 16 15 14 19 19 N 1.30628 * 120.00175 * 190.56790 * 18 16 15 20 20 Si 1.86802 * 119.99588 * 10.56503 * 18 16 15 21 21 H 1.48495 * 109.47338 * 267.21355 * 20 18 16 22 22 H 1.48496 * 109.47260 * 27.21897 * 20 18 16 23 23 H 1.48506 * 109.46754 * 147.21435 * 20 18 16 24 24 H 1.09002 * 109.47331 * 269.97680 * 1 2 3 25 25 H 1.08998 * 109.47552 * 29.97762 * 1 2 3 26 26 H 1.09004 * 109.47055 * 149.98199 * 1 2 3 27 27 H 1.08005 * 124.83813 * 179.97438 * 4 3 2 28 28 H 0.97001 * 119.99989 * 0.02562 * 7 6 2 29 29 H 1.08001 * 119.95189 * 0.04555 * 11 10 8 30 30 H 1.07999 * 119.66209 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.71321 * 179.97438 * 13 12 11 32 32 H 1.07999 * 120.05936 * 180.30665 * 14 13 12 33 33 H 0.97003 * 119.99841 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2222 1.1073 0.0000 4 6 3.5053 0.9803 -0.0005 5 16 3.9384 -0.6735 0.0057 6 6 2.2366 -1.1296 -0.0005 7 7 1.7348 -2.4321 0.0001 8 6 2.5816 -3.4806 -0.0011 9 8 3.7835 -3.2918 -0.0021 10 6 2.0519 -4.8556 -0.0010 11 6 0.6811 -5.0803 0.0997 12 6 0.1888 -6.3713 0.0999 13 6 1.0483 -7.4573 0.0008 14 6 2.4067 -7.2674 -0.1058 15 6 2.9345 -5.9630 -0.1030 16 6 4.3242 -5.7579 -0.2062 17 1 4.7928 -4.9510 0.3376 18 6 5.0996 -6.6015 -1.0153 19 7 6.4033 -6.5477 -0.9543 20 14 4.2677 -7.8019 -2.1800 21 1 4.1012 -9.1133 -1.5035 22 1 2.9357 -7.2725 -2.5682 23 1 5.1049 -7.9741 -3.3944 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5141 27 1 4.2067 1.8017 -0.0010 28 1 0.7765 -2.5827 0.0006 29 1 0.0019 -4.2441 0.1775 30 1 -0.8754 -6.5374 0.1788 31 1 0.6466 -8.4599 0.0029 32 1 3.0671 -8.1181 -0.1874 33 1 6.9395 -7.1314 -1.5136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633061365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:02 Heat of formation + Delta-G solvation = 31.082179 kcal Electronic energy + Delta-G solvation = -19839.875457 eV Core-core repulsion = 16764.184143 eV Total energy + Delta-G solvation = -3075.691314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.98517 -39.02615 -37.29319 -34.65717 -33.73523 -31.21147 -30.67421 -30.12972 -26.90643 -25.47799 -24.31476 -22.72852 -21.43869 -20.31422 -19.40675 -17.72255 -17.65673 -16.89655 -15.99649 -15.54897 -15.10517 -14.69832 -14.29593 -13.91639 -13.75144 -13.68177 -13.23013 -12.86376 -12.75608 -12.42285 -12.32748 -12.19884 -11.74164 -11.10538 -10.98103 -10.91671 -10.74095 -10.63620 -10.37983 -9.97262 -9.46193 -9.31215 -8.74446 -8.63931 -8.06139 -7.81231 -7.63955 -7.09121 -4.68907 1.08114 1.53029 1.88739 2.25575 2.44367 2.96806 3.01805 3.08391 3.16359 3.47062 3.73126 3.81607 4.39308 4.58200 5.18360 5.21170 5.39222 5.54765 5.62500 5.68716 5.72958 5.87052 5.99620 6.16250 6.31417 6.33650 6.59900 6.69952 6.90144 7.01312 7.18458 7.38399 7.52100 7.77151 7.83742 8.07227 8.25252 8.42093 8.63118 8.83925 9.86841 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.020020 B = 0.005729 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.262956 B = 4886.186180 C = 6034.665805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.027 4.027 3 N -0.448 5.448 4 C -0.072 4.072 5 S 0.243 5.757 6 C 0.030 3.970 7 N -0.640 5.640 8 C 0.548 3.452 9 O -0.495 6.495 10 C -0.254 4.254 11 C -0.039 4.039 12 C -0.249 4.249 13 C -0.063 4.063 14 C -0.219 4.219 15 C 0.117 3.883 16 C -0.395 4.395 17 H 0.125 0.875 18 C 0.078 3.922 19 N -0.781 5.781 20 Si 0.907 3.093 21 H -0.266 1.266 22 H -0.241 1.241 23 H -0.286 1.286 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.190 0.810 28 H 0.411 0.589 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 5.556 0.118 9.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.163 4.163 3 N -0.162 5.162 4 C -0.370 4.370 5 S 0.492 5.508 6 C -0.191 4.191 7 N -0.286 5.286 8 C 0.344 3.656 9 O -0.371 6.371 10 C -0.259 4.259 11 C -0.058 4.058 12 C -0.269 4.269 13 C -0.082 4.082 14 C -0.238 4.238 15 C 0.112 3.888 16 C -0.421 4.421 17 H 0.143 0.857 18 C -0.144 4.144 19 N -0.404 5.404 20 Si 0.733 3.267 21 H -0.192 1.192 22 H -0.165 1.165 23 H -0.213 1.213 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.207 0.793 28 H 0.249 0.751 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.560 5.580 0.066 7.877 hybrid contribution -1.628 -0.614 -0.525 1.818 sum -7.188 4.966 -0.460 8.749 Atomic orbital electron populations 1.20125 0.87747 1.02536 1.02151 1.19933 0.97798 0.85498 1.13093 1.66074 1.05506 1.30666 1.13983 1.28361 0.95497 1.03363 1.09775 1.85170 1.00800 0.97563 1.67305 1.23608 0.98353 0.89423 1.07704 1.43265 1.11026 1.01348 1.72967 1.18784 0.85833 0.84808 0.76164 1.90699 1.14368 1.83600 1.48476 1.19013 0.92906 0.90132 1.23894 1.20759 0.93435 0.96092 0.95473 1.20299 0.97892 0.92395 1.16264 1.20786 0.93531 0.97376 0.96462 1.21175 0.94828 0.96462 1.11288 1.17485 0.93110 0.89672 0.88561 1.20238 0.90210 1.11418 1.20257 0.85735 1.26423 0.94712 0.95824 0.97420 1.69557 1.06266 1.32275 1.32283 0.86369 0.81112 0.80164 0.79051 1.19200 1.16457 1.21311 0.91426 0.90838 0.91855 0.79310 0.75052 0.88701 0.88190 0.88257 0.87518 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.07 36.00 0.36 -0.44 16 2 C -0.03 -0.43 6.77 -83.93 -0.57 -1.00 16 3 N -0.45 -7.30 10.53 -11.73 -0.12 -7.42 16 4 C -0.07 -1.06 12.21 51.55 0.63 -0.43 16 5 S 0.24 4.12 20.45 -107.50 -2.20 1.92 16 6 C 0.03 0.52 7.17 -15.34 -0.11 0.41 16 7 N -0.64 -11.17 5.34 -11.61 -0.06 -11.23 16 8 C 0.55 11.77 7.69 -12.56 -0.10 11.68 16 9 O -0.49 -12.01 11.16 5.22 0.06 -11.95 16 10 C -0.25 -5.58 5.92 -104.37 -0.62 -6.20 16 11 C -0.04 -0.72 9.52 -39.22 -0.37 -1.09 16 12 C -0.25 -4.54 10.03 -39.38 -0.39 -4.93 16 13 C -0.06 -1.22 10.01 -39.60 -0.40 -1.61 16 14 C -0.22 -4.84 7.00 -38.89 -0.27 -5.11 16 15 C 0.12 2.82 5.04 -106.54 -0.54 2.28 16 16 C -0.40 -10.40 8.30 -37.83 -0.31 -10.71 16 17 H 0.13 3.61 5.97 -52.49 -0.31 3.30 16 18 C 0.08 1.97 5.47 -17.30 -0.09 1.88 16 19 N -0.78 -20.08 13.92 55.56 0.77 -19.30 16 20 Si 0.91 19.58 24.51 -169.99 -4.17 15.41 16 21 H -0.27 -5.45 6.76 56.52 0.38 -5.07 16 22 H -0.24 -5.34 6.72 56.52 0.38 -4.96 16 23 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.67 7.22 -51.93 -0.37 0.29 16 27 H 0.19 2.09 8.06 -52.48 -0.42 1.67 16 28 H 0.41 5.88 5.67 -40.82 -0.23 5.65 16 29 H 0.10 1.39 6.42 -52.49 -0.34 1.05 16 30 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 32 H 0.11 2.32 4.98 -52.49 -0.26 2.06 16 33 H 0.29 6.67 8.29 -40.82 -0.34 6.34 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -28.77 290.73 -6.93 -35.70 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -2.81 Total: 7.78 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -2.78 Total: -15.29 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.59 Total: -37.96 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.06 Total: -11.95 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.17 Total: 15.41 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -2.20 Total: 1.92 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.77 -6.93 -35.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633061365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.779 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds