Wall clock time and date at job start Tue Mar 31 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31824 * 122.85969 * 2 1 4 4 C 1.28943 * 117.20562 * 180.02562 * 3 2 1 5 5 S 1.70956 * 110.32875 * 359.75945 * 4 3 2 6 6 C 1.34476 * 122.85971 * 180.02562 * 2 1 3 7 7 N 1.39583 * 126.07086 * 359.94081 * 6 2 1 8 8 C 1.34776 * 120.00333 * 179.97438 * 7 6 2 9 9 O 1.21660 * 119.99824 * 0.02562 * 8 7 6 10 10 C 1.47346 * 120.00491 * 180.02562 * 8 7 6 11 11 C 1.39277 * 120.28879 * 355.25237 * 10 8 7 12 12 C 1.38167 * 120.09540 * 180.02562 * 11 10 8 13 13 C 1.38859 * 120.68118 * 0.02562 * 12 11 10 14 14 C 1.37569 * 120.58024 * 359.69435 * 13 12 11 15 15 C 1.40718 * 119.88057 * 0.55959 * 14 13 12 16 16 C 1.40848 * 120.32930 * 179.74359 * 15 14 13 17 17 H 1.07999 * 120.00054 * 216.11476 * 16 15 14 18 18 C 1.40273 * 120.00296 * 36.11697 * 16 15 14 19 19 N 1.30628 * 120.00175 * 190.56790 * 18 16 15 20 20 Si 1.86802 * 119.99588 * 10.56503 * 18 16 15 21 21 H 1.48495 * 109.47338 * 267.21355 * 20 18 16 22 22 H 1.48496 * 109.47260 * 27.21897 * 20 18 16 23 23 H 1.48506 * 109.46754 * 147.21435 * 20 18 16 24 24 H 1.09002 * 109.47331 * 269.97680 * 1 2 3 25 25 H 1.08998 * 109.47552 * 29.97762 * 1 2 3 26 26 H 1.09004 * 109.47055 * 149.98199 * 1 2 3 27 27 H 1.08005 * 124.83813 * 179.97438 * 4 3 2 28 28 H 0.97001 * 119.99989 * 0.02562 * 7 6 2 29 29 H 1.08001 * 119.95189 * 0.04555 * 11 10 8 30 30 H 1.07999 * 119.66209 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.71321 * 179.97438 * 13 12 11 32 32 H 1.07999 * 120.05936 * 180.30665 * 14 13 12 33 33 H 0.97003 * 119.99841 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2222 1.1073 0.0000 4 6 3.5053 0.9803 -0.0005 5 16 3.9384 -0.6735 0.0057 6 6 2.2366 -1.1296 -0.0005 7 7 1.7348 -2.4321 0.0001 8 6 2.5816 -3.4806 -0.0011 9 8 3.7835 -3.2918 -0.0021 10 6 2.0519 -4.8556 -0.0010 11 6 0.6811 -5.0803 0.0997 12 6 0.1888 -6.3713 0.0999 13 6 1.0483 -7.4573 0.0008 14 6 2.4067 -7.2674 -0.1058 15 6 2.9345 -5.9630 -0.1030 16 6 4.3242 -5.7579 -0.2062 17 1 4.7928 -4.9510 0.3376 18 6 5.0996 -6.6015 -1.0153 19 7 6.4033 -6.5477 -0.9543 20 14 4.2677 -7.8019 -2.1800 21 1 4.1012 -9.1133 -1.5035 22 1 2.9357 -7.2725 -2.5682 23 1 5.1049 -7.9741 -3.3944 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5141 27 1 4.2067 1.8017 -0.0010 28 1 0.7765 -2.5827 0.0006 29 1 0.0019 -4.2441 0.1775 30 1 -0.8754 -6.5374 0.1788 31 1 0.6466 -8.4599 0.0029 32 1 3.0671 -8.1181 -0.1874 33 1 6.9395 -7.1314 -1.5136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633061365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:02 Heat of formation + Delta-G solvation = 11.723366 kcal Electronic energy + Delta-G solvation = -19840.714918 eV Core-core repulsion = 16764.184143 eV Total energy + Delta-G solvation = -3076.530775 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.44934 -40.44978 -38.90322 -36.20965 -35.44412 -32.56128 -32.36019 -31.52530 -28.22140 -27.11374 -25.58274 -24.29893 -23.07634 -21.82653 -20.80249 -19.41432 -19.11046 -18.26634 -17.43428 -17.21669 -16.49699 -16.25868 -15.87085 -15.42391 -15.36085 -15.00417 -14.53053 -14.40801 -14.34445 -13.89063 -13.41014 -13.35418 -13.26411 -12.73101 -12.60228 -12.33397 -12.24219 -12.18621 -12.02516 -11.64950 -11.13226 -10.78721 -10.28424 -10.00050 -9.63912 -9.48258 -8.98626 -8.87261 -6.54153 -0.25907 0.24896 0.30713 0.80757 0.98267 1.23498 1.36250 1.45199 1.74359 2.03092 2.08271 2.18401 2.65765 3.45549 3.46615 3.99981 4.12743 4.18958 4.32648 4.41086 4.65413 4.67637 4.78878 4.79459 4.94207 4.97393 5.15104 5.24531 5.38736 5.42788 5.62158 5.80119 5.90444 6.19990 6.32419 6.42416 6.69616 6.76283 6.79776 7.23503 8.15763 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.020020 B = 0.005729 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.262956 B = 4886.186180 C = 6034.665805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.011 4.011 3 N -0.467 5.467 4 C -0.038 4.038 5 S 0.184 5.816 6 C -0.003 4.003 7 N -0.623 5.623 8 C 0.543 3.457 9 O -0.533 6.533 10 C -0.267 4.267 11 C -0.038 4.038 12 C -0.227 4.227 13 C -0.058 4.058 14 C -0.243 4.243 15 C 0.103 3.897 16 C -0.445 4.445 17 H 0.077 0.923 18 C 0.039 3.961 19 N -0.839 5.839 20 Si 0.964 3.036 21 H -0.247 1.247 22 H -0.248 1.248 23 H -0.281 1.281 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.227 0.773 28 H 0.426 0.574 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 5.866 -0.100 13.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 N -0.181 5.181 4 C -0.336 4.336 5 S 0.433 5.567 6 C -0.222 4.222 7 N -0.271 5.271 8 C 0.338 3.662 9 O -0.411 6.411 10 C -0.272 4.272 11 C -0.057 4.057 12 C -0.246 4.246 13 C -0.076 4.076 14 C -0.262 4.262 15 C 0.099 3.901 16 C -0.473 4.473 17 H 0.095 0.905 18 C -0.177 4.177 19 N -0.465 5.465 20 Si 0.786 3.214 21 H -0.172 1.172 22 H -0.172 1.172 23 H -0.208 1.208 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.244 0.756 28 H 0.268 0.732 29 H 0.158 0.842 30 H 0.165 0.835 31 H 0.156 0.844 32 H 0.122 0.878 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.257 5.905 -0.138 11.836 hybrid contribution -0.519 -0.428 -0.338 0.753 sum -10.776 5.477 -0.477 12.097 Atomic orbital electron populations 1.20327 0.84829 1.04002 1.03674 1.20576 0.99581 0.84615 1.09890 1.66216 1.05911 1.30656 1.15305 1.28937 0.95665 1.02599 1.06353 1.85473 1.02791 1.00148 1.68244 1.23649 0.97905 0.89681 1.10972 1.42814 1.11195 1.00673 1.72439 1.18907 0.85737 0.85741 0.75793 1.90719 1.16194 1.84399 1.49835 1.19406 0.94618 0.89940 1.23229 1.21233 0.92237 0.98311 0.93919 1.20946 1.00104 0.91511 1.12051 1.21299 0.92288 0.99978 0.94013 1.21265 0.96532 0.95379 1.13045 1.17755 0.92578 0.91569 0.88183 1.19982 0.91890 1.11925 1.23492 0.90487 1.27100 0.95059 0.97162 0.98339 1.69614 1.07427 1.34735 1.34688 0.85524 0.79543 0.78905 0.77379 1.17164 1.17157 1.20780 0.89725 0.89809 0.90007 0.75639 0.73204 0.84174 0.83548 0.84412 0.87850 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.07 71.23 0.72 -0.69 16 2 C -0.01 -0.32 6.77 41.70 0.28 -0.04 16 3 N -0.47 -14.13 10.53 -191.01 -2.01 -16.14 16 4 C -0.04 -1.05 12.21 130.67 1.60 0.55 16 5 S 0.18 6.40 20.45 -56.49 -1.16 5.25 16 6 C 0.00 -0.11 7.17 82.60 0.59 0.48 16 7 N -0.62 -21.05 5.34 -308.89 -1.65 -22.70 16 8 C 0.54 23.80 7.69 86.64 0.67 24.47 16 9 O -0.53 -27.69 11.16 -4.22 -0.05 -27.74 16 10 C -0.27 -11.57 5.92 -19.70 -0.12 -11.68 16 11 C -0.04 -1.26 9.52 22.50 0.21 -1.05 16 12 C -0.23 -6.94 10.03 22.40 0.22 -6.72 16 13 C -0.06 -1.97 10.01 22.26 0.22 -1.75 16 14 C -0.24 -10.49 7.00 22.72 0.16 -10.33 16 15 C 0.10 5.11 5.04 -21.11 -0.11 5.00 16 16 C -0.44 -25.28 8.30 23.40 0.19 -25.08 16 17 H 0.08 4.99 5.97 -2.91 -0.02 4.97 16 18 C 0.04 2.10 5.47 85.37 0.47 2.57 16 19 N -0.84 -46.86 13.92 21.88 0.30 -46.55 16 20 Si 0.96 41.64 24.51 68.60 1.68 43.32 16 21 H -0.25 -9.71 6.76 99.48 0.67 -9.04 16 22 H -0.25 -10.75 6.72 99.48 0.67 -10.08 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 1.36 7.22 -2.39 -0.02 1.35 16 27 H 0.23 4.39 8.06 -2.91 -0.02 4.37 16 28 H 0.43 10.87 5.67 -92.71 -0.53 10.35 16 29 H 0.14 3.28 6.42 -2.91 -0.02 3.26 16 30 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 32 H 0.10 4.45 4.98 -2.91 -0.01 4.44 16 33 H 0.29 14.71 8.29 -92.71 -0.77 13.94 16 Total: -1.00 -69.08 290.73 2.81 -66.27 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.58 Total: 22.56 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 5.11 Total: -24.28 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -3.36 Total: -85.38 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.68 Total: 43.32 kcal Atomic # 16 Polarization: 6.40 SS G_CDS: -1.16 Total: 5.25 kcal Total: -69.08 2.81 -66.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633061365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.995 kcal (2) G-P(sol) polarization free energy of solvation -69.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds