Wall clock time and date at job start Tue Mar 31 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31306 * 1 3 3 Si 1.86793 * 119.99965 * 2 1 4 4 H 1.48500 * 109.46907 * 269.99611 * 3 2 1 5 5 H 1.48497 * 109.47252 * 29.99516 * 3 2 1 6 6 H 1.48503 * 109.47216 * 149.99869 * 3 2 1 7 7 C 1.38978 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99428 * 179.97438 * 7 2 1 9 9 N 1.37310 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.36521 * 126.07103 * 180.30667 * 9 7 2 11 11 C 1.35681 * 107.50603 * 180.17980 * 10 9 7 12 12 N 1.40556 * 126.07982 * 179.84439 * 11 10 9 13 13 C 1.37659 * 119.99995 * 179.71528 * 12 11 10 14 14 N 1.30902 * 124.97209 * 359.96614 * 13 12 11 15 15 C 1.36103 * 108.70912 * 180.02562 * 14 13 12 16 16 C 1.39631 * 133.64362 * 180.02562 * 15 14 13 17 17 C 1.37745 * 119.77617 * 179.97438 * 16 15 14 18 18 C 1.38647 * 120.41290 * 359.97438 * 17 16 15 19 19 C 1.38231 * 120.43140 * 0.02562 * 18 17 16 20 20 F 1.35093 * 120.06774 * 180.02562 * 19 18 17 21 21 C 1.38732 * 119.85627 * 359.95764 * 19 18 17 22 22 O 1.34475 * 124.97707 * 179.97438 * 13 12 11 23 23 C 1.40670 * 107.83374 * 359.57646 * 11 10 9 24 24 N 1.30912 * 108.38890 * 0.26421 * 23 11 10 25 25 H 0.97003 * 120.00257 * 0.02562 * 1 2 3 26 26 H 1.07998 * 126.24140 * 0.02562 * 10 9 7 27 27 H 0.97000 * 120.00126 * 359.70670 * 12 11 10 28 28 H 1.08000 * 120.11054 * 359.97438 * 16 15 14 29 29 H 1.07994 * 119.79246 * 179.97438 * 17 16 15 30 30 H 1.07995 * 119.78527 * 180.02562 * 18 17 16 31 31 H 1.07993 * 125.80285 * 180.28987 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4946 2.0463 -1.4001 5 1 1.4444 2.6526 0.6999 6 1 3.5446 1.4401 0.7001 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0001 9 7 1.3213 -2.3927 0.0005 10 6 1.8750 -3.6406 0.0069 11 6 0.8578 -4.5385 0.0004 12 7 0.9890 -5.9379 0.0006 13 6 -0.1337 -6.7345 -0.0006 14 7 -1.3663 -6.2938 -0.0014 15 6 -2.2114 -7.3607 -0.0020 16 6 -3.6018 -7.4887 -0.0034 17 6 -4.1734 -8.7420 -0.0041 18 6 -3.3767 -9.8767 -0.0041 19 6 -1.9989 -9.7649 -0.0028 20 9 -1.2297 -10.8754 -0.0033 21 6 -1.4079 -8.5098 -0.0023 22 8 -0.1249 -8.0792 -0.0011 23 6 -0.3513 -3.8197 -0.0004 24 7 -0.0715 -2.5408 -0.0003 25 1 -0.4851 0.8400 -0.0004 26 1 2.9301 -3.8709 0.0133 27 1 1.8706 -6.3424 0.0015 28 1 -4.2270 -6.6081 -0.0038 29 1 -5.2487 -8.8413 -0.0048 30 1 -3.8355 -10.8544 -0.0051 31 1 -1.3419 -4.2497 -0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639353500.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:35 Heat of formation + Delta-G solvation = 76.252434 kcal Electronic energy + Delta-G solvation = -21175.651145 eV Core-core repulsion = 17567.998135 eV Total energy + Delta-G solvation = -3607.653009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.03671 -44.20933 -41.50770 -38.94634 -37.32270 -35.35925 -35.01328 -32.25137 -31.24509 -30.61080 -29.18132 -26.87356 -24.47050 -24.19005 -22.93539 -22.42103 -21.37894 -19.96597 -19.43064 -18.84030 -18.18394 -17.96089 -17.40667 -16.94390 -16.64021 -16.51098 -16.20563 -15.60452 -15.43181 -15.07587 -14.85612 -14.17266 -13.55761 -13.50405 -13.39260 -13.27656 -13.00698 -12.89817 -12.80287 -12.71360 -12.07707 -11.75355 -11.27577 -11.12514 -10.84532 -10.11967 -9.81429 -9.40747 -8.46996 -8.32416 -6.23603 -0.31275 0.08039 0.64439 1.20319 1.42261 1.43833 1.59269 1.80467 2.11540 2.29465 2.38815 2.59350 2.81678 2.98173 3.09003 3.62541 3.71916 3.97467 4.04777 4.26346 4.42247 4.53748 4.61253 4.86307 4.94565 5.00229 5.09753 5.21276 5.27508 5.33000 5.62456 5.82013 5.95070 6.14198 6.31558 6.71744 6.96199 7.42629 7.64848 8.52080 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.043663 B = 0.003301 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.126328 B = 8481.107564 C = 9112.390482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C -0.004 4.004 3 Si 1.018 2.982 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.246 1.246 7 C -0.353 4.353 8 H 0.141 0.859 9 N -0.165 5.165 10 C -0.073 4.073 11 C -0.037 4.037 12 N -0.560 5.560 13 C 0.503 3.497 14 N -0.560 5.560 15 C 0.070 3.930 16 C -0.104 4.104 17 C -0.060 4.060 18 C -0.135 4.135 19 C 0.122 3.878 20 F -0.141 7.141 21 C -0.082 4.082 22 O -0.236 6.236 23 C -0.047 4.047 24 N -0.305 5.305 25 H 0.277 0.723 26 H 0.190 0.810 27 H 0.435 0.565 28 H 0.150 0.850 29 H 0.191 0.809 30 H 0.188 0.812 31 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 -15.063 0.028 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.216 4.216 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.169 1.169 7 C -0.484 4.484 8 H 0.159 0.841 9 N 0.066 4.934 10 C -0.224 4.224 11 C -0.142 4.142 12 N -0.196 5.196 13 C 0.201 3.799 14 N -0.303 5.303 15 C -0.043 4.043 16 C -0.124 4.124 17 C -0.079 4.079 18 C -0.154 4.154 19 C 0.102 3.898 20 F -0.119 7.119 21 C -0.133 4.133 22 O -0.129 6.129 23 C -0.223 4.223 24 N -0.136 5.136 25 H 0.087 0.913 26 H 0.207 0.793 27 H 0.275 0.725 28 H 0.168 0.832 29 H 0.209 0.791 30 H 0.205 0.795 31 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.603 -13.045 0.030 13.834 hybrid contribution 1.696 -1.134 -0.013 2.040 sum -2.907 -14.179 0.017 14.474 Atomic orbital electron populations 1.70383 1.08305 1.29187 1.36949 1.26840 0.96488 1.04197 0.94121 0.84598 0.78293 0.74181 0.79192 1.18965 1.20184 1.16869 1.20624 0.93015 0.80787 1.53963 0.84145 1.44851 1.03733 1.04590 1.40177 1.21811 0.98633 0.83978 1.18006 1.16984 0.93926 0.80031 1.23275 1.39448 1.03470 1.01301 1.75429 1.21437 0.88699 0.77283 0.92468 1.71170 0.97709 1.28283 1.33156 1.20194 0.96491 0.86459 1.01160 1.20729 0.89203 1.00576 1.01916 1.21347 1.02397 0.88756 0.95422 1.21381 0.87825 1.03017 1.03162 1.16772 0.89455 0.76672 1.06915 1.91486 1.75693 1.50513 1.94231 1.20342 0.81386 0.96882 1.14673 1.84370 1.28798 1.21209 1.78530 1.24376 0.99259 0.90617 1.08075 1.78192 0.91773 1.16267 1.27404 0.91296 0.79333 0.72532 0.83185 0.79147 0.79504 0.79942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.17 11.81 21.66 0.26 -45.92 16 2 C 0.00 -0.22 5.50 84.95 0.47 0.25 16 3 Si 1.02 37.72 29.55 68.60 2.03 39.75 16 4 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.28 -10.17 7.11 99.48 0.71 -9.47 16 6 H -0.25 -8.28 7.11 99.48 0.71 -7.57 16 7 C -0.35 -18.22 10.25 84.01 0.86 -17.36 16 8 H 0.14 6.27 7.83 -2.91 -0.02 6.25 16 9 N -0.17 -8.93 3.74 -190.01 -0.71 -9.64 16 10 C -0.07 -3.29 11.50 83.37 0.96 -2.33 16 11 C -0.04 -1.66 6.92 37.74 0.26 -1.40 16 12 N -0.56 -20.36 5.58 -302.09 -1.69 -22.05 16 13 C 0.50 19.21 8.92 179.29 1.60 20.81 16 14 N -0.56 -22.57 8.13 -306.45 -2.49 -25.06 16 15 C 0.07 2.36 7.23 39.30 0.28 2.64 16 16 C -0.10 -2.51 10.10 22.49 0.23 -2.28 16 17 C -0.06 -0.93 10.02 22.25 0.22 -0.71 16 18 C -0.13 -2.24 10.01 22.37 0.22 -2.02 16 19 C 0.12 3.12 7.31 22.39 0.16 3.29 16 20 F -0.14 -3.70 17.27 44.97 0.78 -2.92 16 21 C -0.08 -2.66 7.40 22.87 0.17 -2.49 16 22 O -0.24 -8.39 10.79 -14.67 -0.16 -8.54 16 23 C -0.05 -2.44 10.97 85.42 0.94 -1.50 16 24 N -0.31 -17.79 10.40 -56.45 -0.59 -18.38 16 25 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 26 H 0.19 6.66 8.06 -2.91 -0.02 6.63 16 27 H 0.43 12.20 8.95 -92.71 -0.83 11.38 16 28 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.18 9.32 5.86 -2.91 -0.02 9.30 16 Total: -1.00 -72.81 287.87 4.19 -68.61 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.39 Total: 27.25 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 6.38 Total: -3.10 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -5.22 Total: -121.04 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.16 Total: -8.54 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Total: -72.81 4.19 -68.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639353500.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.867 kcal (2) G-P(sol) polarization free energy of solvation -72.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds