Wall clock time and date at job start Tue Mar 31 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35603 * 116.99957 * 2 1 4 4 C 1.38521 * 120.08489 * 0.02562 * 3 2 1 5 5 C 1.38028 * 120.31199 * 180.02562 * 4 3 2 6 6 C 1.39950 * 120.46854 * 0.02562 * 5 4 3 7 7 C 1.48350 * 119.92508 * 179.97438 * 6 5 4 8 8 C 1.39383 * 120.05614 * 354.19376 * 7 6 5 9 9 C 1.37944 * 119.97671 * 179.97438 * 8 7 6 10 10 C 1.38762 * 120.08651 * 0.02562 * 9 8 7 11 11 O 1.35931 * 119.93979 * 180.02562 * 10 9 8 12 12 C 1.39008 * 120.12182 * 0.02562 * 10 9 8 13 13 F 1.35105 * 119.98740 * 180.02562 * 12 10 9 14 14 C 1.38103 * 120.02637 * 359.74253 * 12 10 9 15 15 C 1.38626 * 120.15816 * 359.97438 * 6 5 4 16 16 C 1.40520 * 119.68685 * 359.97438 * 15 6 5 17 17 C 1.41184 * 120.23028 * 179.97438 * 16 15 6 18 18 H 1.08001 * 120.00178 * 148.39820 * 17 16 15 19 19 C 1.39908 * 120.00007 * 328.41089 * 17 16 15 20 20 N 1.30878 * 120.00214 * 167.44361 * 19 17 16 21 21 Si 1.86795 * 119.99767 * 347.44033 * 19 17 16 22 22 H 1.48501 * 109.47342 * 89.37461 * 21 19 17 23 23 H 1.48499 * 109.47132 * 209.37338 * 21 19 17 24 24 H 1.48505 * 109.47384 * 329.37543 * 21 19 17 25 25 H 1.08999 * 109.47085 * 299.99752 * 1 2 3 26 26 H 1.09001 * 109.47773 * 59.99730 * 1 2 3 27 27 H 1.09003 * 109.47464 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.84129 * 359.74260 * 4 3 2 29 29 H 1.07997 * 119.76931 * 180.02562 * 5 4 3 30 30 H 1.08004 * 120.01416 * 359.96121 * 8 7 6 31 31 H 1.07995 * 119.95976 * 180.02562 * 9 8 7 32 32 H 0.96705 * 114.00170 * 89.99855 * 11 10 9 33 33 H 1.07992 * 120.04658 * 180.25762 * 14 12 10 34 34 H 1.07997 * 120.16002 * 179.97438 * 15 6 5 35 35 H 0.96998 * 120.00345 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2918 2.3711 0.0005 5 6 1.9136 3.6034 0.0000 6 6 3.3102 3.6936 -0.0016 7 6 3.9658 5.0244 -0.0027 8 6 3.1976 6.1810 -0.1242 9 6 3.8089 7.4176 -0.1246 10 6 5.1881 7.5118 -0.0046 11 8 5.7873 8.7319 -0.0048 12 6 5.9581 6.3607 0.1157 13 9 7.3007 6.4556 0.2329 14 6 5.3507 5.1204 0.1214 15 6 4.0824 2.5424 -0.0022 16 6 3.4563 1.2844 -0.0006 17 6 4.2317 0.1045 -0.0016 18 1 3.8635 -0.7841 0.4895 19 6 5.4772 0.0865 -0.6387 20 7 6.3010 -0.9103 -0.4372 21 14 5.9642 1.4852 -1.7770 22 1 6.6438 2.5477 -0.9931 23 1 6.8872 0.9743 -2.8221 24 1 4.7490 2.0456 -2.4208 25 1 -0.3633 0.5138 0.8900 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 0.2134 2.3132 -0.0033 29 1 1.3182 4.5044 0.0008 30 1 2.1240 6.1091 -0.2183 31 1 3.2133 8.3136 -0.2183 32 1 5.8816 9.1239 0.8742 33 1 5.9482 4.2262 0.2191 34 1 5.1602 2.6120 -0.0038 35 1 7.1643 -0.9230 -0.8791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240785554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:37 Heat of formation + Delta-G solvation = -79.492167 kcal Electronic energy + Delta-G solvation = -21981.386633 eV Core-core repulsion = 18438.227623 eV Total energy + Delta-G solvation = -3543.159010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.095 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.72081 -39.63449 -38.85494 -37.26293 -35.86496 -33.69581 -31.14829 -31.04899 -30.07279 -27.72241 -26.60390 -25.20869 -23.06716 -22.64159 -21.14223 -20.10753 -18.62893 -17.71872 -17.22139 -16.65212 -16.36889 -15.88982 -15.42379 -14.99981 -14.88967 -14.70563 -14.42928 -14.13976 -13.48952 -13.40253 -13.08046 -12.80038 -12.54463 -12.14383 -12.10211 -11.85796 -11.63975 -11.28967 -11.11841 -10.76109 -10.69396 -10.53195 -10.29091 -9.83811 -9.69893 -9.22939 -8.86631 -8.57152 -7.86147 -7.01754 -6.93492 -4.46474 0.94068 1.29226 2.41997 2.49575 3.03732 3.17000 3.27155 3.70698 3.92524 4.04798 4.22723 4.39559 4.47894 4.86620 5.04138 5.24021 5.29008 5.44778 5.56437 5.65121 5.70048 5.77351 5.89479 5.95596 6.07480 6.19443 6.23670 6.34023 6.44294 6.65578 6.81851 6.87638 7.07334 7.27165 7.36762 7.56526 7.58271 7.81591 8.10398 8.34418 8.68514 8.72154 10.07646 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.006002 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.688733 B = 4663.739009 C = 6181.048819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.305 6.305 3 C 0.049 3.951 4 C -0.177 4.177 5 C -0.183 4.183 6 C -0.054 4.054 7 C 0.012 3.988 8 C -0.117 4.117 9 C -0.113 4.113 10 C 0.048 3.952 11 O -0.490 6.490 12 C 0.080 3.920 13 F -0.137 7.137 14 C -0.147 4.147 15 C -0.204 4.204 16 C 0.076 3.924 17 C -0.427 4.427 18 H 0.097 0.903 19 C 0.081 3.919 20 N -0.809 5.809 21 Si 0.904 3.096 22 H -0.267 1.267 23 H -0.289 1.289 24 H -0.244 1.244 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.385 0.615 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 11.727 1.125 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.218 6.218 3 C 0.004 3.996 4 C -0.196 4.196 5 C -0.202 4.202 6 C -0.055 4.055 7 C 0.012 3.988 8 C -0.135 4.135 9 C -0.131 4.131 10 C 0.003 3.997 11 O -0.299 6.299 12 C 0.060 3.940 13 F -0.115 7.115 14 C -0.166 4.166 15 C -0.223 4.223 16 C 0.073 3.927 17 C -0.456 4.456 18 H 0.115 0.885 19 C -0.137 4.137 20 N -0.434 5.434 21 Si 0.731 3.269 22 H -0.194 1.194 23 H -0.217 1.217 24 H -0.167 1.167 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.104 0.896 28 H 0.125 0.875 29 H 0.122 0.878 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.240 0.760 33 H 0.161 0.839 34 H 0.131 0.869 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.295 11.251 0.490 12.445 hybrid contribution 0.381 0.769 0.039 0.859 sum -4.915 12.020 0.529 12.997 Atomic orbital electron populations 1.22832 0.81107 1.02348 1.00166 1.86030 1.18720 1.27736 1.89319 1.19326 0.92114 0.83015 1.05150 1.20657 0.98024 0.92506 1.08387 1.20187 0.92501 0.95896 1.11613 1.18170 0.93086 0.89935 1.04264 1.18926 0.91467 0.93792 0.94605 1.21217 1.00618 0.90745 1.00931 1.21167 0.92565 0.98596 1.00814 1.18370 0.90793 0.83732 1.06845 1.84874 1.80922 1.30266 1.33881 1.18001 0.77348 0.94075 1.04596 1.91476 1.29512 1.97034 1.93504 1.21389 0.95565 0.96392 1.03256 1.20955 0.98257 0.91121 1.11953 1.17071 0.88560 0.93301 0.93783 1.19323 0.99148 0.97989 1.29105 0.88493 1.26115 0.94850 0.96612 0.96113 1.69656 1.07628 1.30453 1.35618 0.86476 0.79849 0.80477 0.80053 1.19397 1.21663 1.16692 0.93860 0.93807 0.89560 0.87526 0.87846 0.84537 0.84686 0.75978 0.83901 0.86873 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.47 16 2 O -0.30 -6.57 9.85 -18.51 -0.18 -6.75 16 3 C 0.05 1.11 6.72 -38.28 -0.26 0.86 16 4 C -0.18 -3.46 9.01 -39.55 -0.36 -3.82 16 5 C -0.18 -3.47 9.41 -39.02 -0.37 -3.84 16 6 C -0.05 -1.12 5.86 -104.95 -0.62 -1.73 16 7 C 0.01 0.22 5.87 -104.89 -0.62 -0.39 16 8 C -0.12 -1.72 9.41 -39.26 -0.37 -2.08 16 9 C -0.11 -1.48 9.97 -39.50 -0.39 -1.87 16 10 C 0.05 0.70 6.71 -39.10 -0.26 0.44 16 11 O -0.49 -6.22 13.36 -19.52 -0.26 -6.48 16 12 C 0.08 1.34 7.30 -39.35 -0.29 1.05 16 13 F -0.14 -2.36 17.10 2.25 0.04 -2.32 16 14 C -0.15 -2.69 9.38 -39.21 -0.37 -3.06 16 15 C -0.20 -4.73 6.46 -38.58 -0.25 -4.98 16 16 C 0.08 1.90 5.13 -106.72 -0.55 1.35 16 17 C -0.43 -11.53 9.20 -37.84 -0.35 -11.87 16 18 H 0.10 2.80 7.93 -52.49 -0.42 2.38 16 19 C 0.08 2.13 5.46 -17.33 -0.09 2.03 16 20 N -0.81 -21.59 13.93 55.55 0.77 -20.81 16 21 Si 0.90 20.85 24.44 -169.99 -4.15 16.70 16 22 H -0.27 -5.88 5.85 56.52 0.33 -5.55 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.24 -5.74 6.87 56.52 0.39 -5.36 16 25 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 26 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.11 1.75 6.27 -52.49 -0.33 1.42 16 29 H 0.10 1.62 6.21 -52.49 -0.33 1.30 16 30 H 0.14 1.72 6.21 -52.48 -0.33 1.39 16 31 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.39 2.93 9.06 45.56 0.41 3.35 16 33 H 0.14 2.76 5.57 -52.49 -0.29 2.47 16 34 H 0.11 2.64 2.64 -52.49 -0.14 2.50 16 35 H 0.29 6.94 8.30 -40.82 -0.34 6.60 16 LS Contribution 297.91 15.07 4.49 4.49 Total: -1.00 -29.48 297.91 -5.71 -35.19 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -2.27 Total: 6.44 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -4.14 Total: -26.46 kcal Atomic # 7 Polarization: -21.59 SS G_CDS: 0.77 Total: -20.81 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.44 Total: -13.23 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.15 Total: 16.70 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.48 -5.71 -35.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240785554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.297 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds