Wall clock time and date at job start Tue Mar 31 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35603 * 116.99957 * 2 1 4 4 C 1.38521 * 120.08489 * 0.02562 * 3 2 1 5 5 C 1.38028 * 120.31199 * 180.02562 * 4 3 2 6 6 C 1.39950 * 120.46854 * 0.02562 * 5 4 3 7 7 C 1.48350 * 119.92508 * 179.97438 * 6 5 4 8 8 C 1.39383 * 120.05614 * 354.19376 * 7 6 5 9 9 C 1.37944 * 119.97671 * 179.97438 * 8 7 6 10 10 C 1.38762 * 120.08651 * 0.02562 * 9 8 7 11 11 O 1.35931 * 119.93979 * 180.02562 * 10 9 8 12 12 C 1.39008 * 120.12182 * 0.02562 * 10 9 8 13 13 F 1.35105 * 119.98740 * 180.02562 * 12 10 9 14 14 C 1.38103 * 120.02637 * 359.74253 * 12 10 9 15 15 C 1.38626 * 120.15816 * 359.97438 * 6 5 4 16 16 C 1.40520 * 119.68685 * 359.97438 * 15 6 5 17 17 C 1.41184 * 120.23028 * 179.97438 * 16 15 6 18 18 H 1.08001 * 120.00178 * 148.39820 * 17 16 15 19 19 C 1.39908 * 120.00007 * 328.41089 * 17 16 15 20 20 N 1.30878 * 120.00214 * 167.44361 * 19 17 16 21 21 Si 1.86795 * 119.99767 * 347.44033 * 19 17 16 22 22 H 1.48501 * 109.47342 * 89.37461 * 21 19 17 23 23 H 1.48499 * 109.47132 * 209.37338 * 21 19 17 24 24 H 1.48505 * 109.47384 * 329.37543 * 21 19 17 25 25 H 1.08999 * 109.47085 * 299.99752 * 1 2 3 26 26 H 1.09001 * 109.47773 * 59.99730 * 1 2 3 27 27 H 1.09003 * 109.47464 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.84129 * 359.74260 * 4 3 2 29 29 H 1.07997 * 119.76931 * 180.02562 * 5 4 3 30 30 H 1.08004 * 120.01416 * 359.96121 * 8 7 6 31 31 H 1.07995 * 119.95976 * 180.02562 * 9 8 7 32 32 H 0.96705 * 114.00170 * 89.99855 * 11 10 9 33 33 H 1.07992 * 120.04658 * 180.25762 * 14 12 10 34 34 H 1.07997 * 120.16002 * 179.97438 * 15 6 5 35 35 H 0.96998 * 120.00345 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2918 2.3711 0.0005 5 6 1.9136 3.6034 0.0000 6 6 3.3102 3.6936 -0.0016 7 6 3.9658 5.0244 -0.0027 8 6 3.1976 6.1810 -0.1242 9 6 3.8089 7.4176 -0.1246 10 6 5.1881 7.5118 -0.0046 11 8 5.7873 8.7319 -0.0048 12 6 5.9581 6.3607 0.1157 13 9 7.3007 6.4556 0.2329 14 6 5.3507 5.1204 0.1214 15 6 4.0824 2.5424 -0.0022 16 6 3.4563 1.2844 -0.0006 17 6 4.2317 0.1045 -0.0016 18 1 3.8635 -0.7841 0.4895 19 6 5.4772 0.0865 -0.6387 20 7 6.3010 -0.9103 -0.4372 21 14 5.9642 1.4852 -1.7770 22 1 6.6438 2.5477 -0.9931 23 1 6.8872 0.9743 -2.8221 24 1 4.7490 2.0456 -2.4208 25 1 -0.3633 0.5138 0.8900 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 0.2134 2.3132 -0.0033 29 1 1.3182 4.5044 0.0008 30 1 2.1240 6.1091 -0.2183 31 1 3.2133 8.3136 -0.2183 32 1 5.8816 9.1239 0.8742 33 1 5.9482 4.2262 0.2191 34 1 5.1602 2.6120 -0.0038 35 1 7.1643 -0.9230 -0.8791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240785554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:37 Heat of formation + Delta-G solvation = -99.685388 kcal Electronic energy + Delta-G solvation = -21982.262277 eV Core-core repulsion = 18438.227623 eV Total energy + Delta-G solvation = -3544.034654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.00375 -41.01116 -40.26202 -38.57041 -37.27340 -35.50998 -32.76714 -32.41524 -31.45473 -29.09489 -28.02178 -26.90863 -24.42425 -23.96984 -22.69962 -21.62566 -19.75817 -19.43235 -18.76311 -18.08613 -17.69066 -17.11092 -16.98623 -16.38659 -16.31300 -16.29098 -15.84333 -15.52056 -14.83622 -14.77469 -14.65116 -14.31860 -14.04592 -13.69286 -13.43419 -13.26292 -13.07082 -12.84205 -12.64930 -12.47790 -12.25608 -11.81472 -11.71871 -11.59762 -11.36433 -11.01570 -10.10209 -9.85209 -9.61361 -8.87505 -8.54962 -6.42544 -0.33959 0.09235 0.70415 0.93805 1.18308 1.31765 1.39336 2.04193 2.37033 2.73639 2.79072 2.93032 3.27692 3.44373 3.65156 3.78716 4.10637 4.17524 4.21275 4.33230 4.48385 4.51452 4.60554 4.77592 4.79758 4.81781 4.95465 4.99069 5.08868 5.15326 5.22597 5.39091 5.60828 5.64827 5.75546 5.93501 6.14301 6.24534 6.44354 6.71324 6.77927 7.04046 8.22581 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.006002 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.688733 B = 4663.739009 C = 6181.048819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.340 6.340 3 C 0.037 3.963 4 C -0.173 4.173 5 C -0.153 4.153 6 C -0.065 4.065 7 C -0.015 4.015 8 C -0.099 4.099 9 C -0.097 4.097 10 C 0.067 3.933 11 O -0.495 6.495 12 C 0.055 3.945 13 F -0.147 7.147 14 C -0.165 4.165 15 C -0.211 4.211 16 C 0.043 3.957 17 C -0.466 4.466 18 H 0.054 0.946 19 C 0.046 3.954 20 N -0.860 5.860 21 Si 0.954 3.046 22 H -0.260 1.260 23 H -0.280 1.280 24 H -0.252 1.252 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.169 0.831 31 H 0.180 0.820 32 H 0.411 0.589 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.010 16.598 0.683 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C -0.008 4.008 4 C -0.192 4.192 5 C -0.171 4.171 6 C -0.066 4.066 7 C -0.016 4.016 8 C -0.116 4.116 9 C -0.115 4.115 10 C 0.022 3.978 11 O -0.308 6.308 12 C 0.036 3.964 13 F -0.126 7.126 14 C -0.184 4.184 15 C -0.230 4.230 16 C 0.040 3.960 17 C -0.497 4.497 18 H 0.072 0.928 19 C -0.167 4.167 20 N -0.489 5.489 21 Si 0.779 3.221 22 H -0.186 1.186 23 H -0.207 1.207 24 H -0.175 1.175 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.125 0.875 28 H 0.167 0.833 29 H 0.172 0.828 30 H 0.187 0.813 31 H 0.197 0.803 32 H 0.270 0.730 33 H 0.134 0.866 34 H 0.119 0.881 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.618 16.143 0.071 18.300 hybrid contribution 1.132 -0.421 0.274 1.238 sum -7.486 15.723 0.345 17.418 Atomic orbital electron populations 1.23215 0.77780 1.04552 1.01812 1.85996 1.22276 1.27881 1.89312 1.19562 0.91738 0.84687 1.04794 1.21130 1.00048 0.91387 1.06639 1.20852 0.92039 0.97562 1.06659 1.18500 0.94069 0.90389 1.03604 1.18856 0.91393 0.93756 0.97563 1.21522 1.01820 0.89722 0.98570 1.21567 0.91864 0.99584 0.98526 1.18513 0.91325 0.83540 1.04471 1.84811 1.80809 1.29082 1.36115 1.18219 0.77252 0.94641 1.06306 1.91444 1.30280 1.97065 1.93776 1.21279 0.96116 0.96267 1.04757 1.21048 0.98283 0.91814 1.11903 1.17277 0.90201 0.93125 0.95349 1.19166 1.00777 0.97803 1.31906 0.92782 1.26648 0.94688 0.98378 0.96946 1.69702 1.08533 1.32468 1.38149 0.85721 0.79239 0.78460 0.78712 1.18639 1.20700 1.17532 0.91971 0.91972 0.87469 0.83341 0.82776 0.81328 0.80310 0.72953 0.86636 0.88065 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.81 113.37 1.11 1.70 16 2 O -0.34 -14.86 9.85 -89.14 -0.88 -15.74 16 3 C 0.04 1.70 6.72 23.11 0.16 1.85 16 4 C -0.17 -6.14 9.01 22.29 0.20 -5.94 16 5 C -0.15 -5.05 9.41 22.63 0.21 -4.84 16 6 C -0.07 -2.56 5.86 -20.08 -0.12 -2.67 16 7 C -0.02 -0.51 5.87 -20.04 -0.12 -0.63 16 8 C -0.10 -2.31 9.41 22.48 0.21 -2.10 16 9 C -0.10 -1.94 9.97 22.33 0.22 -1.72 16 10 C 0.07 1.68 6.71 22.58 0.15 1.83 16 11 O -0.50 -10.29 13.36 -92.77 -1.24 -11.53 16 12 C 0.06 1.78 7.30 22.42 0.16 1.94 16 13 F -0.15 -5.01 17.10 44.97 0.77 -4.24 16 14 C -0.17 -5.96 9.38 22.51 0.21 -5.75 16 15 C -0.21 -10.04 6.46 22.92 0.15 -9.89 16 16 C 0.04 2.24 5.13 -21.23 -0.11 2.13 16 17 C -0.47 -27.41 9.20 23.40 0.22 -27.20 16 18 H 0.05 3.49 7.93 -2.91 -0.02 3.47 16 19 C 0.05 2.58 5.46 85.24 0.47 3.05 16 20 N -0.86 -49.96 13.93 21.82 0.30 -49.66 16 21 Si 0.95 45.70 24.44 68.60 1.68 47.38 16 22 H -0.26 -11.94 5.85 99.48 0.58 -11.36 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.25 -12.13 6.87 99.48 0.68 -11.45 16 25 H 0.06 1.51 7.66 -2.39 -0.02 1.49 16 26 H 0.06 1.51 7.65 -2.39 -0.02 1.50 16 27 H 0.11 2.51 8.14 -2.39 -0.02 2.50 16 28 H 0.15 4.00 6.27 -2.91 -0.02 3.99 16 29 H 0.15 3.57 6.21 -2.91 -0.02 3.55 16 30 H 0.17 2.83 6.21 -2.91 -0.02 2.82 16 31 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.41 4.29 9.06 -74.05 -0.67 3.61 16 33 H 0.12 4.70 5.57 -2.91 -0.02 4.69 16 34 H 0.10 4.98 2.64 -2.91 -0.01 4.97 16 35 H 0.29 15.29 8.30 -92.71 -0.77 14.52 16 Total: -1.00 -71.76 297.91 4.11 -67.65 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.35 Total: 14.37 kcal Atomic # 6 Polarization: -51.36 SS G_CDS: 3.13 Total: -48.23 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.30 Total: -49.66 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -2.12 Total: -27.27 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.77 Total: -4.24 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.68 Total: 47.38 kcal Total: -71.76 4.11 -67.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240785554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.034 kcal (2) G-P(sol) polarization free energy of solvation -71.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds