Wall clock time and date at job start Tue Mar 31 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33644 * 122.74963 * 2 1 4 4 S 1.76195 * 107.92585 * 179.97438 * 3 2 1 5 5 C 1.70984 * 90.28172 * 0.27857 * 4 3 2 6 6 C 1.50705 * 124.91438 * 179.84082 * 5 4 3 7 7 N 1.46500 * 109.46693 * 269.99980 * 6 5 4 8 8 C 1.36935 * 120.00254 * 83.99054 * 7 6 5 9 9 H 1.07996 * 119.99948 * 326.11646 * 8 7 6 10 10 C 1.38810 * 119.99688 * 146.10881 * 8 7 6 11 11 N 1.31614 * 120.00475 * 336.87907 * 10 8 7 12 12 Si 1.86804 * 119.99613 * 156.88084 * 10 8 7 13 13 H 1.48495 * 109.47401 * 60.00188 * 12 10 8 14 14 H 1.48505 * 109.47002 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46996 * 299.99762 * 12 10 8 16 16 C 1.46506 * 119.99492 * 263.98798 * 7 6 5 17 17 C 1.50694 * 109.46985 * 90.00836 * 16 7 6 18 18 C 1.38234 * 119.99812 * 269.72276 * 17 16 7 19 19 C 1.38235 * 120.00165 * 179.76607 * 18 17 16 20 20 C 1.38229 * 119.99950 * 0.48699 * 19 18 17 21 21 C 1.38237 * 119.99840 * 359.78932 * 20 19 18 22 22 C 1.38231 * 120.00337 * 89.99770 * 17 16 7 23 23 N 1.29018 * 110.16582 * 359.83864 * 5 4 3 24 24 H 1.09004 * 109.47293 * 269.72966 * 1 2 3 25 25 H 1.09008 * 109.47109 * 149.72882 * 1 2 3 26 26 H 1.08998 * 109.47763 * 29.72994 * 1 2 3 27 27 H 1.07999 * 126.03293 * 0.04161 * 3 2 1 28 28 H 1.08999 * 109.46830 * 29.99991 * 6 5 4 29 29 H 1.08997 * 109.47014 * 150.00071 * 6 5 4 30 30 H 0.97006 * 120.00506 * 179.97438 * 11 10 8 31 31 H 1.09004 * 109.46754 * 210.00507 * 16 7 6 32 32 H 1.08998 * 109.47210 * 330.00266 * 16 7 6 33 33 H 1.08006 * 120.00046 * 359.97438 * 18 17 16 34 34 H 1.08003 * 119.99953 * 180.25157 * 19 18 17 35 35 H 1.08003 * 120.00621 * 179.76847 * 20 19 18 36 36 H 1.07998 * 119.99791 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.00171 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5039 -0.9818 -0.0073 6 6 4.4835 -2.1270 -0.0143 7 7 4.7994 -2.4909 -1.3978 8 6 5.7671 -1.8052 -2.0822 9 1 5.9127 -0.7507 -1.9002 10 6 6.5610 -2.4656 -3.0099 11 7 6.7239 -3.7690 -2.9274 12 14 7.3981 -1.5043 -4.3754 13 1 8.3071 -0.4911 -3.7820 14 1 8.1817 -2.4347 -5.2271 15 1 6.3703 -0.8231 -5.2030 16 6 4.0799 -3.5885 -2.0489 17 6 2.8538 -3.0468 -2.7374 18 6 1.6526 -2.9779 -2.0568 19 6 0.5290 -2.4765 -2.6868 20 6 0.6042 -2.0533 -4.0006 21 6 1.8040 -2.1274 -4.6830 22 6 2.9289 -2.6240 -4.0514 23 7 2.2199 -1.1083 -0.0066 24 1 -0.3634 -0.0048 1.0277 25 1 -0.3634 -0.8876 -0.5181 26 1 -0.3634 0.8923 -0.5096 27 1 1.8390 2.1308 0.0006 28 1 5.3965 -1.8272 0.5001 29 1 4.0439 -2.9843 0.4956 30 1 7.2784 -4.2306 -3.5758 31 1 4.7297 -4.0631 -2.7842 32 1 3.7818 -4.3223 -1.3001 33 1 1.5928 -3.3128 -1.0317 34 1 -0.4086 -2.4189 -2.1537 35 1 -0.2746 -1.6650 -4.4941 36 1 1.8627 -1.7972 -5.7096 37 1 3.8664 -2.6815 -4.5844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088593473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:11 Heat of formation + Delta-G solvation = 90.310230 kcal Electronic energy + Delta-G solvation = -20993.670281 eV Core-core repulsion = 18056.380383 eV Total energy + Delta-G solvation = -2937.289898 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.099 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.27802 -38.34596 -35.76276 -32.29612 -31.37108 -30.36920 -30.06640 -27.49527 -26.67995 -25.57658 -23.08292 -21.72301 -21.22405 -20.12213 -19.03012 -17.13228 -16.78718 -15.94336 -15.12242 -14.81892 -14.36584 -14.30698 -14.13297 -13.72042 -13.39943 -13.06697 -12.84935 -12.69995 -12.37756 -12.07572 -12.03770 -11.71779 -11.44672 -10.94365 -10.92133 -10.78119 -10.58917 -10.54410 -10.19580 -10.07007 -9.89312 -9.00290 -8.81446 -8.63701 -8.12619 -8.07183 -7.84587 -6.84217 -5.94651 -3.48978 1.33776 2.03669 2.18706 2.22549 2.44156 3.30233 3.36861 3.37523 3.42688 4.37805 4.60696 4.71134 5.19497 5.45943 5.52423 5.58077 5.59900 5.65403 5.71669 5.76013 5.80649 5.99939 6.08098 6.11691 6.30212 6.33637 6.39481 6.50020 6.57829 6.79468 6.86166 6.90978 7.23465 7.29901 7.45409 7.68591 7.72750 7.85908 8.32776 8.41867 8.99989 9.61899 10.16222 11.05977 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.008183 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.215727 B = 3421.051878 C = 4425.655977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.072 3.928 3 C -0.295 4.295 4 S 0.098 5.902 5 C 0.077 3.923 6 C 0.209 3.791 7 N -0.555 5.555 8 C -0.265 4.265 9 H 0.064 0.936 10 C 0.020 3.980 11 N -0.879 5.879 12 Si 0.892 3.108 13 H -0.279 1.279 14 H -0.288 1.288 15 H -0.280 1.280 16 C 0.170 3.830 17 C -0.079 4.079 18 C -0.087 4.087 19 C -0.130 4.130 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.098 4.098 23 N -0.473 5.473 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.161 0.839 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.259 0.741 31 H 0.111 0.889 32 H 0.036 0.964 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 4.755 3.722 11.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.061 4.061 3 C -0.434 4.434 4 S 0.353 5.647 5 C -0.204 4.204 6 C 0.078 3.922 7 N -0.272 5.272 8 C -0.394 4.394 9 H 0.081 0.919 10 C -0.181 4.181 11 N -0.521 5.521 12 Si 0.721 3.279 13 H -0.205 1.205 14 H -0.214 1.214 15 H -0.207 1.207 16 C 0.045 3.955 17 C -0.082 4.082 18 C -0.106 4.106 19 C -0.148 4.148 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.117 4.117 23 N -0.189 5.189 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.179 0.821 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.128 0.872 32 H 0.055 0.945 33 H 0.134 0.866 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.595 4.608 3.635 10.407 hybrid contribution -0.662 0.949 -1.011 1.536 sum -9.257 5.556 2.624 11.110 Atomic orbital electron populations 1.20292 0.88341 1.02803 1.01955 1.20196 0.97619 0.87125 1.01126 1.26566 0.96090 1.03157 1.17603 1.83994 1.06950 1.05617 1.68158 1.29192 0.94710 0.98425 0.98119 1.19617 0.92781 0.90874 0.88940 1.43747 1.38176 1.38098 1.07228 1.18982 1.09539 0.91705 1.19202 0.91868 1.24996 0.96769 0.95466 1.00878 1.69963 1.38725 1.07880 1.35484 0.86530 0.79286 0.79588 0.82483 1.20459 1.21387 1.20665 1.20216 0.89176 0.89107 0.96997 1.21087 0.96240 0.97201 0.93669 1.21026 0.92240 0.98469 0.98853 1.20883 0.98137 1.01025 0.94792 1.20849 0.97190 1.02727 0.95299 1.20993 0.93564 1.01676 0.99292 1.21057 0.97457 0.98034 0.95184 1.66167 1.04677 1.30512 1.17506 0.91448 0.90796 0.91618 0.82129 0.90990 0.90964 0.93141 0.87169 0.94531 0.86552 0.87784 0.87821 0.87634 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.31 36.00 0.37 -0.59 16 2 C 0.07 1.20 6.74 -84.23 -0.57 0.63 16 3 C -0.29 -4.68 11.13 29.12 0.32 -4.36 16 4 S 0.10 1.70 23.18 -107.50 -2.49 -0.79 16 5 C 0.08 1.48 6.93 -13.46 -0.09 1.39 16 6 C 0.21 4.21 6.30 -5.19 -0.03 4.18 16 7 N -0.56 -12.90 2.43 -175.98 -0.43 -13.33 16 8 C -0.27 -6.74 9.47 -15.06 -0.14 -6.89 16 9 H 0.06 1.63 7.93 -52.49 -0.42 1.22 16 10 C 0.02 0.52 4.95 -17.43 -0.09 0.43 16 11 N -0.88 -23.57 11.32 55.49 0.63 -22.95 16 12 Si 0.89 20.76 29.61 -169.99 -5.03 15.73 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.17 3.87 5.46 -5.19 -0.03 3.84 16 17 C -0.08 -1.68 5.46 -104.63 -0.57 -2.25 16 18 C -0.09 -1.67 7.83 -39.58 -0.31 -1.98 16 19 C -0.13 -2.25 9.85 -39.59 -0.39 -2.64 16 20 C -0.14 -2.44 10.05 -39.58 -0.40 -2.84 16 21 C -0.14 -2.55 10.05 -39.58 -0.40 -2.95 16 22 C -0.10 -2.09 9.70 -39.58 -0.38 -2.47 16 23 N -0.47 -8.78 8.08 -8.06 -0.07 -8.84 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.98 7.38 -51.92 -0.38 0.59 16 26 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 27 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 29 H 0.07 1.37 7.83 -51.93 -0.41 0.96 16 30 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.11 2.80 5.26 -51.93 -0.27 2.53 16 32 H 0.04 0.79 7.80 -51.93 -0.40 0.38 16 33 H 0.12 2.21 7.56 -52.48 -0.40 1.81 16 34 H 0.10 1.55 7.50 -52.48 -0.39 1.16 16 35 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.11 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -27.45 326.29 -9.94 -37.39 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.76 Total: 4.36 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.71 Total: -16.49 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.13 Total: -45.12 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.49 Total: -0.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.45 -9.94 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.701 kcal (2) G-P(sol) polarization free energy of solvation -27.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds