Wall clock time and date at job start Tue Mar 31 2020 06:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47241 * 2 1 4 4 S 1.81404 * 109.46911 * 240.00179 * 2 1 3 5 5 C 1.81399 * 103.00129 * 64.99979 * 4 2 1 6 6 C 1.50698 * 109.47064 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99794 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00349 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00082 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46744 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47249 * 119.99539 * 10 8 6 13 13 H 1.48498 * 109.47278 * 239.99824 * 10 8 6 14 14 C 1.50695 * 109.47343 * 120.00243 * 2 1 3 15 15 N 1.30522 * 125.72179 * 75.16152 * 14 2 1 16 16 C 1.34124 * 109.35142 * 180.30846 * 15 14 2 17 17 C 1.34656 * 108.19919 * 359.71811 * 16 15 14 18 18 N 1.35840 * 125.71665 * 255.00044 * 14 2 1 19 19 C 1.40235 * 126.47290 * 359.96299 * 18 14 2 20 20 C 1.38827 * 120.06423 * 309.43752 * 19 18 14 21 21 C 1.38124 * 119.93160 * 179.78791 * 20 19 18 22 22 C 1.38267 * 120.06667 * 0.46709 * 21 20 19 23 23 C 1.38275 * 120.13217 * 359.78800 * 22 21 20 24 24 C 1.38129 * 120.06459 * 359.97434 * 23 22 21 25 25 H 1.08994 * 109.47552 * 60.00001 * 1 2 3 26 26 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46829 * 299.99874 * 1 2 3 28 28 H 1.09006 * 109.46883 * 299.99946 * 5 4 2 29 29 H 1.09001 * 109.47032 * 60.00053 * 5 4 2 30 30 H 0.96996 * 120.00255 * 180.02562 * 9 8 6 31 31 H 1.07998 * 125.90291 * 179.72914 * 16 15 14 32 32 H 1.07993 * 126.58607 * 180.02562 * 17 16 15 33 33 H 1.07999 * 120.03062 * 0.02562 * 20 19 18 34 34 H 1.07998 * 119.96436 * 180.23171 * 21 20 19 35 35 H 1.08001 * 119.93714 * 179.76063 * 22 21 20 36 36 H 1.07996 * 119.97096 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.03342 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4812 5 6 1.5663 0.2153 -2.8309 6 6 1.9972 -0.3695 -4.1513 7 1 2.5572 -1.2926 -4.1759 8 6 1.6773 0.2744 -5.3277 9 7 0.9958 1.3988 -5.2976 10 14 2.2120 -0.4501 -6.9643 11 1 2.9607 -1.7104 -6.7267 12 1 1.0142 -0.7345 -7.7947 13 1 3.0867 0.5187 -7.6725 14 6 2.0323 -0.7104 1.2304 15 7 2.0305 -2.0020 1.4187 16 6 2.5446 -2.2757 2.6269 17 6 2.8856 -1.1119 3.2123 18 7 2.5658 -0.1141 2.3281 19 6 2.7493 1.2625 2.5227 20 6 3.3864 2.0233 1.5519 21 6 3.5618 3.3798 1.7445 22 6 3.1120 3.9783 2.9070 23 6 2.4818 3.2221 3.8780 24 6 2.2992 1.8661 3.6890 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.4790 0.2882 -2.8037 29 1 2.0001 1.2085 -2.7142 30 1 0.7704 1.8516 -6.1253 31 1 2.6645 -3.2594 3.0561 32 1 3.3266 -0.9883 4.1903 33 1 3.7412 1.5557 0.6454 34 1 4.0540 3.9728 0.9879 35 1 3.2537 5.0384 3.0570 36 1 2.1311 3.6923 4.7848 37 1 1.8065 1.2760 4.4476 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:30 Heat of formation + Delta-G solvation = 83.887455 kcal Electronic energy + Delta-G solvation = -19686.571762 eV Core-core repulsion = 16749.003351 eV Total energy + Delta-G solvation = -2937.568411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.26876 -39.21544 -34.10165 -33.67343 -33.11405 -31.28645 -29.54396 -28.80376 -28.16508 -24.10877 -23.28117 -23.05178 -22.77910 -20.99286 -19.88740 -18.08061 -16.65639 -16.48051 -15.91149 -15.41331 -14.95466 -14.80307 -14.38553 -14.33187 -13.79535 -13.65891 -13.34614 -13.20114 -13.06005 -12.57700 -12.31826 -12.16554 -11.91441 -11.57465 -11.43185 -11.18720 -10.85595 -10.65585 -10.28033 -9.93033 -9.77512 -9.54446 -9.30231 -8.81655 -8.71205 -8.59385 -8.24227 -6.61388 -6.17346 -4.20752 0.76217 1.02710 1.99057 2.43157 2.85026 3.27152 3.33513 3.34712 3.41156 3.42630 3.86722 4.38134 4.47910 4.56278 4.60337 4.73361 4.84461 5.06384 5.13660 5.19981 5.22228 5.36792 5.43120 5.57080 5.64729 5.70568 5.88626 5.95465 6.03625 6.13471 6.18154 6.35357 6.49540 6.50371 6.83026 7.10529 7.15176 7.28801 7.78221 8.04310 8.21003 8.81650 9.42189 10.94098 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.018846 B = 0.004347 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.394132 B = 6439.814629 C = 7425.880852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.009 3.991 3 H 0.091 0.909 4 S -0.246 6.246 5 C 0.079 3.921 6 C -0.508 4.508 7 H 0.068 0.932 8 C 0.066 3.934 9 N -0.894 5.894 10 Si 0.905 3.095 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.282 1.282 14 C 0.251 3.749 15 N -0.460 5.460 16 C -0.023 4.023 17 C -0.060 4.060 18 N -0.415 5.415 19 C 0.121 3.879 20 C -0.114 4.114 21 C -0.099 4.099 22 C -0.117 4.117 23 C -0.106 4.106 24 C -0.117 4.117 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.172 0.828 32 H 0.174 0.826 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.910 4.676 19.893 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.109 0.891 4 S -0.019 6.019 5 C -0.068 4.068 6 C -0.548 4.548 7 H 0.086 0.914 8 C -0.138 4.138 9 N -0.532 5.532 10 Si 0.732 3.268 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.208 1.208 14 C -0.011 4.011 15 N -0.177 5.177 16 C -0.170 4.170 17 C -0.190 4.190 18 N -0.096 5.096 19 C 0.030 3.970 20 C -0.133 4.133 21 C -0.117 4.117 22 C -0.135 4.135 23 C -0.125 4.125 24 C -0.137 4.137 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.190 0.810 32 H 0.191 0.809 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.154 3.346 19.201 19.744 hybrid contribution -0.097 1.437 -0.106 1.444 sum 3.057 4.783 19.095 19.921 Atomic orbital electron populations 1.22017 0.91977 1.03743 1.01930 1.21367 0.99028 0.99812 0.91918 0.89114 1.87104 1.75333 1.40651 0.98779 1.21171 0.99005 0.94886 0.91749 1.20694 1.36139 1.09186 0.88746 0.91382 1.24944 0.94807 0.94798 0.99247 1.69960 1.38680 1.16628 1.27936 0.86314 0.78472 0.79304 0.82707 1.19363 1.20722 1.20802 1.22852 1.00342 0.88437 0.89460 1.70368 1.19510 1.11235 1.16565 1.22372 1.04126 0.97995 0.92516 1.22679 1.10538 0.87759 0.98062 1.43068 1.46779 1.04367 1.15397 1.17772 1.00794 0.81663 0.96749 1.21323 0.97985 0.94665 0.99366 1.21149 0.99014 0.93844 0.97722 1.21301 0.98087 1.00349 0.93764 1.21045 0.98889 0.92966 0.99577 1.21069 1.00312 0.95462 0.96845 0.90806 0.90665 0.93203 0.94326 0.94877 0.92620 0.81042 0.80904 0.84546 0.84690 0.85286 0.85142 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.08 37.16 0.34 -2.04 16 2 C 0.01 0.17 3.00 -27.89 -0.08 0.08 16 3 H 0.09 1.62 5.56 -51.92 -0.29 1.33 16 4 S -0.25 -5.63 20.89 -107.50 -2.25 -7.87 16 5 C 0.08 2.06 5.39 36.00 0.19 2.25 16 6 C -0.51 -14.43 9.13 -34.44 -0.31 -14.74 16 7 H 0.07 1.96 7.71 -52.49 -0.40 1.55 16 8 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 9 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 10 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.25 4.45 6.42 -154.67 -0.99 3.46 16 15 N -0.46 -8.55 11.02 -10.64 -0.12 -8.67 16 16 C -0.02 -0.33 11.85 -17.82 -0.21 -0.54 16 17 C -0.06 -0.78 11.30 -16.46 -0.19 -0.96 16 18 N -0.42 -6.15 2.88 -57.84 -0.17 -6.32 16 19 C 0.12 1.57 5.81 -83.58 -0.49 1.08 16 20 C -0.11 -1.46 8.16 -39.41 -0.32 -1.78 16 21 C -0.10 -1.01 10.04 -39.61 -0.40 -1.41 16 22 C -0.12 -1.00 10.04 -39.56 -0.40 -1.40 16 23 C -0.11 -0.90 10.04 -39.61 -0.40 -1.30 16 24 C -0.12 -1.21 9.70 -39.41 -0.38 -1.59 16 25 H 0.07 1.33 6.92 -51.93 -0.36 0.97 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.04 1.04 7.14 -51.92 -0.37 0.66 16 29 H 0.03 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.14 1.95 7.35 -52.49 -0.39 1.57 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -32.21 330.11 -10.32 -42.54 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.75 Total: 1.16 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -3.74 Total: -17.15 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.45 Total: -40.14 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -2.25 Total: -7.87 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.21 -10.32 -42.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.424 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds