Wall clock time and date at job start Tue Mar 31 2020 06:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 O 1.45203 * 109.46919 * 270.02071 * 14 13 12 16 16 C 1.34795 * 117.00247 * 179.97438 * 15 14 13 17 17 O 1.21539 * 119.99560 * 0.02562 * 16 15 14 18 18 C 1.46943 * 120.00420 * 180.02562 * 16 15 14 19 19 C 1.32716 * 124.63184 * 179.70535 * 18 16 15 20 20 C 1.51109 * 110.74251 * 179.84488 * 19 18 16 21 21 C 1.54569 * 104.90735 * 343.79051 * 20 19 18 22 22 C 1.51111 * 124.62801 * 359.97438 * 18 16 15 23 23 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 24 24 C 1.38101 * 120.07425 * 359.95492 * 23 13 12 25 25 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 27 27 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 28 28 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 29 29 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 30 30 H 1.07998 * 124.62352 * 359.97438 * 19 18 16 31 31 H 1.09007 * 110.51095 * 224.84028 * 20 19 18 32 32 H 1.09004 * 110.24838 * 102.61300 * 20 19 18 33 33 H 1.09004 * 110.98781 * 266.72428 * 21 20 19 34 34 H 1.09007 * 110.97774 * 142.93530 * 21 20 19 35 35 H 1.08998 * 110.37034 * 315.45409 * 22 18 16 36 36 H 1.09008 * 110.36128 * 77.76672 * 22 18 16 37 37 H 1.07999 * 119.96503 * 179.97438 * 23 13 12 38 38 H 1.07992 * 120.03608 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 8 4.6410 -7.6193 0.8783 16 6 5.3636 -8.7551 0.9482 17 8 5.7688 -9.2810 -0.0698 18 6 5.6613 -9.3573 2.2550 19 6 6.3576 -10.4735 2.4301 20 6 6.4776 -10.8046 3.8996 21 6 6.0994 -9.4980 4.6337 22 6 5.2116 -8.7933 3.5829 23 6 4.2024 -4.5970 -0.2043 24 6 3.4573 -3.4394 -0.0951 25 1 -0.4850 0.8400 0.0004 26 1 0.3579 -4.7892 -0.2301 27 1 1.6954 -6.8451 -0.4339 28 1 3.8358 -7.8149 -1.0361 29 1 5.3320 -6.8560 -0.9360 30 1 6.7824 -11.0634 1.6314 31 1 7.4996 -11.0945 4.1436 32 1 5.7841 -11.6028 4.1643 33 1 6.9861 -8.9044 4.8561 34 1 5.5356 -9.7100 5.5422 35 1 5.3725 -7.7157 3.6115 36 1 4.1609 -9.0255 3.7572 37 1 5.2812 -4.5470 -0.1945 38 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761550430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:46 Heat of formation + Delta-G solvation = -77.901740 kcal Electronic energy + Delta-G solvation = -21224.054326 eV Core-core repulsion = 17804.424588 eV Total energy + Delta-G solvation = -3419.629739 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43813 -39.12086 -38.35912 -36.89370 -35.93230 -32.44321 -30.76614 -30.25158 -29.70998 -28.70374 -26.10318 -24.95303 -22.82760 -22.05601 -21.23021 -20.57821 -18.93436 -18.07814 -17.45313 -17.18111 -16.67569 -16.32214 -15.60546 -14.90495 -14.63673 -14.47426 -13.84805 -13.64905 -13.45384 -13.13273 -12.94634 -12.84530 -12.77221 -12.31232 -12.19864 -11.95720 -11.73413 -11.55454 -11.44886 -11.39001 -11.04363 -10.79055 -10.73140 -10.47896 -10.43785 -10.42073 -9.41061 -9.28511 -8.91529 -8.26472 -7.33161 -6.52747 -4.11273 0.96155 1.96251 2.15778 2.89358 2.98304 3.10018 3.12037 3.15941 3.90898 4.20222 4.29441 4.52814 4.70337 4.84287 4.91660 5.02448 5.16443 5.21854 5.25895 5.30510 5.38680 5.45365 5.56102 5.62151 5.65590 5.72803 5.77614 5.90153 6.05227 6.13315 6.17592 6.33661 6.51689 6.60008 6.81173 6.97298 7.15509 7.27487 7.35694 7.71815 7.81576 7.92313 8.92691 9.60833 10.64872 Molecular weight = 288.12amu Principal moments of inertia in cm(-1) A = 0.026912 B = 0.002795 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.161719 B =10014.856930 C =10382.367808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.163 3.837 11 C -0.196 4.196 12 C -0.048 4.048 13 C -0.204 4.204 14 C 0.129 3.871 15 O -0.343 6.343 16 C 0.510 3.490 17 O -0.518 6.518 18 C -0.169 4.169 19 C -0.070 4.070 20 C -0.107 4.107 21 C -0.125 4.125 22 C -0.086 4.086 23 C -0.044 4.044 24 C -0.238 4.238 25 H 0.271 0.729 26 H 0.120 0.880 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.140 0.860 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.064 -16.740 6.465 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.075 6.075 10 C 0.109 3.891 11 C -0.215 4.215 12 C -0.067 4.067 13 C -0.205 4.205 14 C 0.057 3.943 15 O -0.260 6.260 16 C 0.356 3.644 17 O -0.410 6.410 18 C -0.170 4.170 19 C -0.088 4.088 20 C -0.144 4.144 21 C -0.163 4.163 22 C -0.124 4.124 23 C -0.063 4.063 24 C -0.257 4.257 25 H 0.081 0.919 26 H 0.138 0.862 27 H 0.131 0.869 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.157 0.843 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.709 -16.608 6.167 20.701 hybrid contribution 0.485 0.831 -0.273 1.000 sum 11.194 -15.777 5.894 20.223 Atomic orbital electron populations 1.70045 1.06018 1.27780 1.45489 1.25330 0.95869 0.98955 0.96341 0.85619 0.79169 0.80164 0.78327 1.19012 1.20062 1.20054 1.21422 0.91933 0.80696 1.52845 0.88820 1.83977 1.34527 1.11568 1.77407 1.19441 0.90309 0.88037 0.91355 1.20189 0.99689 0.90201 1.11434 1.20509 0.92610 0.96936 0.96610 1.18862 0.93353 0.92352 1.15905 1.21710 0.99053 0.93196 0.80368 1.86751 1.65325 1.38089 1.35814 1.20894 0.75304 0.79074 0.89120 1.90832 1.50673 1.62451 1.36994 1.21151 1.04374 0.98827 0.92647 1.24165 0.92466 0.93760 0.98417 1.21497 1.02714 0.98957 0.91194 1.22469 1.00062 0.95711 0.98018 1.21205 1.00188 1.01294 0.89669 1.20619 0.98432 0.91641 0.95598 1.21143 0.93770 0.98907 1.11874 0.91914 0.86198 0.86893 0.91170 0.91212 0.84266 0.89964 0.89372 0.90691 0.90287 0.89896 0.89907 0.87335 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.16 29.55 -169.99 -5.02 15.13 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.17 -4.84 9.76 0.05 0.00 -4.84 16 10 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 11 C -0.20 -4.10 9.99 -39.39 -0.39 -4.49 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.20 -3.60 5.52 -104.58 -0.58 -4.18 16 14 C 0.13 2.00 5.60 36.00 0.20 2.20 16 15 O -0.34 -5.37 10.03 -40.75 -0.41 -5.78 16 16 C 0.51 7.44 7.94 34.26 0.27 7.72 16 17 O -0.52 -8.58 16.56 -19.30 -0.32 -8.90 16 18 C -0.17 -1.91 6.09 -102.78 -0.63 -2.54 16 19 C -0.07 -0.62 10.44 -35.99 -0.38 -1.00 16 20 C -0.11 -0.67 6.80 -26.86 -0.18 -0.85 16 21 C -0.13 -0.85 7.16 -25.09 -0.18 -1.03 16 22 C -0.09 -0.82 6.56 -26.86 -0.18 -1.00 16 23 C -0.04 -0.83 9.69 -39.61 -0.38 -1.21 16 24 C -0.24 -5.11 9.17 -39.39 -0.36 -5.47 16 25 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 27 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 29 H 0.07 1.02 8.08 -51.93 -0.42 0.61 16 30 H 0.14 1.18 8.03 -52.49 -0.42 0.76 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -31.42 333.53 -7.97 -39.39 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.77 Total: 2.99 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -3.23 Total: -18.98 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.76 Total: -24.04 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.73 Total: -19.52 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.42 -7.97 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761550430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.513 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds