Wall clock time and date at job start Tue Mar 31 2020 06:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42892 * 114.00198 * 2 1 4 4 C 1.53008 * 109.46948 * 53.59800 * 3 2 1 5 5 C 1.50692 * 109.47703 * 293.59704 * 3 2 1 6 6 O 1.20826 * 120.00170 * 216.68224 * 5 3 2 7 7 O 1.34234 * 119.99987 * 36.68546 * 5 3 2 8 8 C 1.45195 * 117.00096 * 180.02562 * 7 5 3 9 9 C 1.53005 * 109.47043 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47070 * 180.02562 * 9 8 7 11 11 S 1.80997 * 109.47115 * 180.02562 * 10 9 8 12 12 C 1.76206 * 100.00225 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99599 * 359.97438 * 12 11 10 14 14 C 1.38798 * 119.99878 * 179.97438 * 12 11 10 15 15 N 1.31628 * 119.99505 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 120.00182 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47569 * 90.00038 * 16 14 12 18 18 H 1.48507 * 109.47066 * 210.00239 * 16 14 12 19 19 H 1.48497 * 109.47517 * 329.99872 * 16 14 12 20 20 C 1.53001 * 109.47176 * 173.59565 * 3 2 1 21 21 C 1.53002 * 117.51668 * 345.69024 * 20 3 2 22 22 C 1.52993 * 117.49707 * 54.31913 * 20 3 2 23 23 H 1.09006 * 109.46462 * 308.60997 * 1 2 3 24 24 H 1.08998 * 109.47143 * 68.60927 * 1 2 3 25 25 H 1.08997 * 109.47376 * 188.61439 * 1 2 3 26 26 H 1.09002 * 109.47082 * 179.97438 * 4 3 2 27 27 H 1.08994 * 109.47154 * 299.99936 * 4 3 2 28 28 H 1.09003 * 109.47030 * 59.99901 * 4 3 2 29 29 H 1.08997 * 109.47149 * 299.99207 * 8 7 5 30 30 H 1.08999 * 109.47269 * 59.99662 * 8 7 5 31 31 H 1.08997 * 109.46935 * 299.99870 * 9 8 7 32 32 H 1.08999 * 109.46930 * 59.99986 * 9 8 7 33 33 H 1.09007 * 109.47064 * 299.99923 * 10 9 8 34 34 H 1.08998 * 109.47436 * 59.99630 * 10 9 8 35 35 H 0.97005 * 120.00090 * 180.02562 * 15 14 12 36 36 H 1.09000 * 115.55219 * 200.00002 * 20 3 2 37 37 H 1.09001 * 117.50301 * 214.96861 * 21 20 3 38 38 H 1.09004 * 117.49629 * 359.97438 * 21 20 3 39 39 H 1.08995 * 117.50065 * 359.97438 * 22 20 3 40 40 H 1.09009 * 117.49682 * 144.99718 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4357 2.1195 1.1611 5 6 1.6951 1.9957 -1.3019 6 8 2.5162 2.7166 -1.8177 7 8 0.5022 1.8098 -1.8886 8 6 0.2680 2.5058 -3.1411 9 6 -1.1343 2.1731 -3.6549 10 6 -1.3809 2.9061 -4.9751 11 16 -3.0400 2.5132 -5.5825 12 6 -3.0551 3.4622 -7.0671 13 1 -2.1907 4.0484 -7.3420 14 6 -4.1779 3.4564 -7.8830 15 7 -4.1889 4.1650 -8.9922 16 14 -5.6732 2.4432 -7.4071 17 1 -6.5868 3.2686 -6.5769 18 1 -6.3830 2.0015 -8.6345 19 1 -5.2387 1.2537 -6.6315 20 6 3.5273 1.1882 0.1609 21 6 4.0876 -0.1604 0.6174 22 6 4.2760 0.2956 -0.8308 23 1 -0.3632 0.6413 0.8031 24 1 -0.3633 0.3748 -0.9569 25 1 -0.3634 -1.0160 0.1539 26 1 1.8794 3.1151 1.1614 27 1 0.3550 2.2030 1.0465 28 1 1.6637 1.6202 2.1028 29 1 0.3508 3.5807 -2.9805 30 1 1.0083 2.1901 -3.8762 31 1 -1.2168 1.0982 -3.8156 32 1 -1.8748 2.4886 -2.9199 33 1 -1.2982 3.9811 -4.8148 34 1 -0.6403 2.5903 -5.7098 35 1 -4.9737 4.1613 -9.5624 36 1 4.0339 2.0878 0.5102 37 1 4.9629 -0.1479 1.2669 38 1 3.3754 -0.9643 0.8036 39 1 3.6878 -0.2084 -1.5976 40 1 5.2753 0.6082 -1.1342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812663325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:23 Heat of formation + Delta-G solvation = -114.693916 kcal Electronic energy + Delta-G solvation = -20795.730553 eV Core-core repulsion = 17509.949338 eV Total energy + Delta-G solvation = -3285.781216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.123 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15149 -38.86063 -37.08873 -36.18772 -33.61413 -32.47849 -31.66728 -27.47806 -26.97474 -25.69143 -24.64159 -22.70890 -22.35591 -21.47237 -20.06025 -18.27056 -17.44750 -17.25953 -16.79677 -16.26773 -15.85179 -15.04514 -14.97838 -14.75825 -14.62871 -14.13127 -13.66551 -13.50493 -13.08848 -12.88471 -12.64906 -12.55572 -12.45220 -11.88561 -11.79068 -11.64987 -11.37284 -11.23553 -11.12189 -11.01033 -10.83229 -10.58624 -10.53820 -10.41037 -10.29938 -9.87765 -9.76375 -9.04769 -8.64395 -7.00860 -6.32065 -4.05664 1.95834 2.33249 2.96845 3.26938 3.33537 3.41731 3.49942 3.59493 4.08400 4.26231 4.28137 4.47744 4.71699 4.74630 4.81807 4.94628 5.00253 5.06493 5.06980 5.10489 5.17873 5.29077 5.33591 5.35394 5.46195 5.59058 5.59238 5.64402 5.68598 5.85560 5.87893 5.96037 6.01496 6.29395 6.33696 6.52439 6.66671 7.58008 7.91580 8.40904 9.13206 10.77387 Molecular weight = 288.12amu Principal moments of inertia in cm(-1) A = 0.036034 B = 0.002863 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.864999 B = 9778.520015 C =10121.943262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.362 6.362 3 C 0.162 3.838 4 C -0.177 4.177 5 C 0.442 3.558 6 O -0.494 6.494 7 O -0.349 6.349 8 C 0.065 3.935 9 C -0.100 4.100 10 C -0.084 4.084 11 S -0.206 6.206 12 C -0.505 4.505 13 H 0.089 0.911 14 C 0.092 3.908 15 N -0.880 5.880 16 Si 0.862 3.138 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.237 1.237 20 C -0.144 4.144 21 C -0.157 4.157 22 C -0.165 4.165 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.271 0.729 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.921 -7.930 22.253 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.281 6.281 3 C 0.121 3.879 4 C -0.234 4.234 5 C 0.283 3.717 6 O -0.381 6.381 7 O -0.266 6.266 8 C -0.010 4.010 9 C -0.138 4.138 10 C -0.233 4.233 11 S 0.021 5.979 12 C -0.652 4.652 13 H 0.107 0.893 14 C -0.117 4.117 15 N -0.517 5.517 16 Si 0.687 3.313 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.161 1.161 20 C -0.162 4.162 21 C -0.194 4.194 22 C -0.202 4.202 23 H 0.069 0.931 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.337 -8.470 22.315 26.869 hybrid contribution 0.014 0.966 -0.836 1.278 sum 12.351 -7.505 21.479 25.889 Atomic orbital electron populations 1.23293 0.79637 1.03037 1.02773 1.87977 1.21227 1.24519 1.94375 1.20830 0.93933 0.84059 0.89114 1.22410 1.02428 1.00918 0.97688 1.24667 0.80116 0.79907 0.86980 1.90663 1.48029 1.35922 1.63457 1.86641 1.35690 1.66214 1.38074 1.23277 0.98573 0.96656 0.82505 1.21327 0.93807 1.02062 0.96633 1.22949 1.00635 1.02246 0.97448 1.84147 1.17116 1.66077 1.30522 1.22117 1.05855 1.31989 1.05254 0.89310 1.24794 0.98237 0.94717 0.93901 1.69936 1.30271 1.39292 1.12189 0.86668 0.83072 0.82402 0.79190 1.19326 1.20022 1.16142 1.22000 0.89655 0.96881 1.07676 1.22955 1.02476 0.96553 0.97443 1.22913 1.01499 1.02526 0.93220 0.93142 0.90508 0.89300 0.90440 0.90517 0.89558 0.91056 0.91032 0.90292 0.90348 0.91045 0.90979 0.91901 0.85786 0.88578 0.87430 0.88617 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 10.15 101.05 1.03 1.10 16 2 O -0.36 -3.72 8.70 -48.52 -0.42 -4.14 16 3 C 0.16 1.64 0.90 -91.77 -0.08 1.56 16 4 C -0.18 -1.36 8.05 37.16 0.30 -1.06 16 5 C 0.44 5.76 6.62 36.00 0.24 6.00 16 6 O -0.49 -7.62 15.92 -18.75 -0.30 -7.92 16 7 O -0.35 -4.57 6.93 -44.30 -0.31 -4.88 16 8 C 0.06 0.90 5.47 37.16 0.20 1.10 16 9 C -0.10 -1.50 5.60 -26.73 -0.15 -1.65 16 10 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 11 S -0.21 -4.94 19.41 -107.50 -2.09 -7.03 16 12 C -0.50 -14.53 10.04 30.94 0.31 -14.22 16 13 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 14 C 0.09 2.67 5.50 -17.43 -0.10 2.58 16 15 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 16 Si 0.86 21.30 27.74 -169.99 -4.71 16.58 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.24 -5.72 6.74 56.52 0.38 -5.34 16 20 C -0.14 -1.33 4.46 -90.62 -0.40 -1.74 16 21 C -0.16 -1.23 9.89 -26.73 -0.26 -1.50 16 22 C -0.16 -1.56 9.81 -26.73 -0.26 -1.83 16 23 H 0.05 0.37 5.85 -51.93 -0.30 0.06 16 24 H 0.08 0.79 5.37 -51.93 -0.28 0.51 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.56 6.29 -51.93 -0.33 0.24 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 30 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.35 8.14 -51.91 -0.42 0.93 16 34 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 35 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.89 7.15 -51.93 -0.37 0.52 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -31.92 342.60 -7.21 -39.14 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.35 Total: -0.03 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 1.03 Total: -11.06 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.78 Total: -25.83 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -1.03 Total: -16.94 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.58 kcal Atomic # 16 Polarization: -4.94 SS G_CDS: -2.09 Total: -7.03 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.92 -7.21 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812663325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.554 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds