Wall clock time and date at job start Tue Mar 31 2020 06:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42892 * 114.00198 * 2 1 4 4 C 1.53008 * 109.46948 * 53.59800 * 3 2 1 5 5 C 1.50692 * 109.47703 * 293.59704 * 3 2 1 6 6 O 1.20826 * 120.00170 * 216.68224 * 5 3 2 7 7 O 1.34234 * 119.99987 * 36.68546 * 5 3 2 8 8 C 1.45195 * 117.00096 * 180.02562 * 7 5 3 9 9 C 1.53005 * 109.47043 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47070 * 180.02562 * 9 8 7 11 11 S 1.80997 * 109.47115 * 180.02562 * 10 9 8 12 12 C 1.76206 * 100.00225 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99599 * 359.97438 * 12 11 10 14 14 C 1.38798 * 119.99878 * 179.97438 * 12 11 10 15 15 N 1.31628 * 119.99505 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 120.00182 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47569 * 90.00038 * 16 14 12 18 18 H 1.48507 * 109.47066 * 210.00239 * 16 14 12 19 19 H 1.48497 * 109.47517 * 329.99872 * 16 14 12 20 20 C 1.53001 * 109.47176 * 173.59565 * 3 2 1 21 21 C 1.53002 * 117.51668 * 345.69024 * 20 3 2 22 22 C 1.52993 * 117.49707 * 54.31913 * 20 3 2 23 23 H 1.09006 * 109.46462 * 308.60997 * 1 2 3 24 24 H 1.08998 * 109.47143 * 68.60927 * 1 2 3 25 25 H 1.08997 * 109.47376 * 188.61439 * 1 2 3 26 26 H 1.09002 * 109.47082 * 179.97438 * 4 3 2 27 27 H 1.08994 * 109.47154 * 299.99936 * 4 3 2 28 28 H 1.09003 * 109.47030 * 59.99901 * 4 3 2 29 29 H 1.08997 * 109.47149 * 299.99207 * 8 7 5 30 30 H 1.08999 * 109.47269 * 59.99662 * 8 7 5 31 31 H 1.08997 * 109.46935 * 299.99870 * 9 8 7 32 32 H 1.08999 * 109.46930 * 59.99986 * 9 8 7 33 33 H 1.09007 * 109.47064 * 299.99923 * 10 9 8 34 34 H 1.08998 * 109.47436 * 59.99630 * 10 9 8 35 35 H 0.97005 * 120.00090 * 180.02562 * 15 14 12 36 36 H 1.09000 * 115.55219 * 200.00002 * 20 3 2 37 37 H 1.09001 * 117.50301 * 214.96861 * 21 20 3 38 38 H 1.09004 * 117.49629 * 359.97438 * 21 20 3 39 39 H 1.08995 * 117.50065 * 359.97438 * 22 20 3 40 40 H 1.09009 * 117.49682 * 144.99718 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4357 2.1195 1.1611 5 6 1.6951 1.9957 -1.3019 6 8 2.5162 2.7166 -1.8177 7 8 0.5022 1.8098 -1.8886 8 6 0.2680 2.5058 -3.1411 9 6 -1.1343 2.1731 -3.6549 10 6 -1.3809 2.9061 -4.9751 11 16 -3.0400 2.5132 -5.5825 12 6 -3.0551 3.4622 -7.0671 13 1 -2.1907 4.0484 -7.3420 14 6 -4.1779 3.4564 -7.8830 15 7 -4.1889 4.1650 -8.9922 16 14 -5.6732 2.4432 -7.4071 17 1 -6.5868 3.2686 -6.5769 18 1 -6.3830 2.0015 -8.6345 19 1 -5.2387 1.2537 -6.6315 20 6 3.5273 1.1882 0.1609 21 6 4.0876 -0.1604 0.6174 22 6 4.2760 0.2956 -0.8308 23 1 -0.3632 0.6413 0.8031 24 1 -0.3633 0.3748 -0.9569 25 1 -0.3634 -1.0160 0.1539 26 1 1.8794 3.1151 1.1614 27 1 0.3550 2.2030 1.0465 28 1 1.6637 1.6202 2.1028 29 1 0.3508 3.5807 -2.9805 30 1 1.0083 2.1901 -3.8762 31 1 -1.2168 1.0982 -3.8156 32 1 -1.8748 2.4886 -2.9199 33 1 -1.2982 3.9811 -4.8148 34 1 -0.6403 2.5903 -5.7098 35 1 -4.9737 4.1613 -9.5624 36 1 4.0339 2.0878 0.5102 37 1 4.9629 -0.1479 1.2669 38 1 3.3754 -0.9643 0.8036 39 1 3.6878 -0.2084 -1.5976 40 1 5.2753 0.6082 -1.1342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812663325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:23 Heat of formation + Delta-G solvation = -132.725954 kcal Electronic energy + Delta-G solvation = -20796.512481 eV Core-core repulsion = 17509.949338 eV Total energy + Delta-G solvation = -3286.563144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.123 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.10080 -39.71049 -38.08596 -36.99374 -34.93283 -34.70000 -32.37357 -28.39125 -28.12723 -27.77594 -25.49980 -23.54068 -23.12884 -22.72168 -20.90328 -19.67967 -19.10109 -18.23182 -17.83016 -17.13815 -17.06804 -16.67686 -16.24207 -15.91815 -15.60107 -15.11602 -14.93095 -14.74742 -14.38830 -14.08964 -14.05017 -13.48524 -13.38710 -13.09734 -13.05863 -12.77431 -12.60405 -12.45074 -12.36759 -12.29796 -12.04804 -11.82803 -11.63941 -11.57756 -11.27179 -11.18813 -11.17804 -10.64478 -10.60509 -9.02703 -8.53638 -6.26158 0.96286 1.03200 1.31980 1.37303 1.48447 1.77517 2.23513 2.61259 2.63859 2.84422 2.84962 3.32989 3.47918 3.71219 3.78622 3.91138 4.05152 4.05777 4.15075 4.24198 4.30191 4.42230 4.44318 4.59301 4.61562 4.69008 4.71247 4.79896 4.94826 4.96436 4.97745 5.09799 5.14020 5.17421 5.31777 5.36295 5.67685 5.94321 6.08573 6.55372 6.89747 8.59567 Molecular weight = 288.12amu Principal moments of inertia in cm(-1) A = 0.036034 B = 0.002863 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.864999 B = 9778.520015 C =10121.943262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.370 6.370 3 C 0.162 3.838 4 C -0.174 4.174 5 C 0.438 3.562 6 O -0.523 6.523 7 O -0.345 6.345 8 C 0.070 3.930 9 C -0.085 4.085 10 C -0.075 4.075 11 S -0.203 6.203 12 C -0.527 4.527 13 H 0.050 0.950 14 C 0.037 3.963 15 N -0.923 5.923 16 Si 0.927 3.073 17 H -0.260 1.260 18 H -0.263 1.263 19 H -0.226 1.226 20 C -0.154 4.154 21 C -0.135 4.135 22 C -0.183 4.183 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.277 0.723 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.589 -9.288 24.904 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.288 6.288 3 C 0.120 3.880 4 C -0.231 4.231 5 C 0.281 3.719 6 O -0.412 6.412 7 O -0.262 6.262 8 C -0.005 4.005 9 C -0.123 4.123 10 C -0.224 4.224 11 S 0.025 5.975 12 C -0.674 4.674 13 H 0.068 0.932 14 C -0.168 4.168 15 N -0.560 5.560 16 Si 0.748 3.252 17 H -0.184 1.184 18 H -0.188 1.188 19 H -0.149 1.149 20 C -0.172 4.172 21 C -0.172 4.172 22 C -0.220 4.220 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.009 -9.836 24.976 29.407 hybrid contribution 0.245 1.419 -1.651 2.191 sum 12.254 -8.416 23.325 27.659 Atomic orbital electron populations 1.23410 0.78930 1.04377 1.02468 1.87982 1.22067 1.24561 1.94235 1.21017 0.94676 0.84190 0.88115 1.22440 1.02511 1.00872 0.97303 1.25506 0.79405 0.79403 0.87562 1.90648 1.48732 1.37402 1.64371 1.86686 1.36099 1.65916 1.37453 1.23058 0.97539 0.96838 0.83109 1.21136 0.94856 1.01757 0.94579 1.22979 0.97290 1.02822 0.99262 1.83765 1.20903 1.65086 1.27727 1.22352 1.04823 1.32409 1.07826 0.93189 1.25815 1.01456 0.95825 0.93716 1.70043 1.31624 1.40892 1.13491 0.85694 0.78984 0.81067 0.79486 1.18429 1.18792 1.14936 1.22141 0.89208 0.97946 1.07860 1.23003 1.02761 0.95288 0.96149 1.22916 1.01673 1.03529 0.93858 0.91448 0.92139 0.87782 0.90125 0.90147 0.87552 0.90926 0.91547 0.89694 0.89265 0.91121 0.91323 0.91339 0.84911 0.86319 0.87720 0.90587 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 10.15 113.37 1.15 1.20 16 2 O -0.37 -6.91 8.70 -136.27 -1.19 -8.10 16 3 C 0.16 3.00 0.90 -11.54 -0.01 2.99 16 4 C -0.17 -2.24 8.05 71.98 0.58 -1.66 16 5 C 0.44 11.04 6.62 71.23 0.47 11.51 16 6 O -0.52 -15.99 15.92 21.96 0.35 -15.64 16 7 O -0.34 -8.64 6.93 -46.64 -0.32 -8.96 16 8 C 0.07 1.87 5.47 71.98 0.39 2.26 16 9 C -0.08 -2.42 5.60 30.59 0.17 -2.25 16 10 C -0.08 -2.81 5.67 71.98 0.41 -2.40 16 11 S -0.20 -9.55 19.41 -56.49 -1.10 -10.64 16 12 C -0.53 -30.94 10.04 67.95 0.68 -30.26 16 13 H 0.05 3.21 8.03 -2.91 -0.02 3.19 16 14 C 0.04 2.14 5.50 84.86 0.47 2.61 16 15 N -0.92 -56.85 13.97 21.65 0.30 -56.54 16 16 Si 0.93 43.52 27.74 68.60 1.90 45.42 16 17 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.23 -10.12 6.74 99.48 0.67 -9.45 16 20 C -0.15 -2.60 4.46 -10.79 -0.05 -2.65 16 21 C -0.14 -1.83 9.89 30.59 0.30 -1.53 16 22 C -0.18 -3.34 9.81 30.59 0.30 -3.04 16 23 H 0.07 0.80 5.85 -2.38 -0.01 0.79 16 24 H 0.06 1.15 5.37 -2.39 -0.01 1.13 16 25 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 0.97 6.29 -2.39 -0.02 0.96 16 28 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 30 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.07 2.62 8.14 -2.40 -0.02 2.60 16 35 H 0.28 15.70 8.31 -92.70 -0.77 14.93 16 36 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 1.51 7.15 -2.39 -0.02 1.49 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -69.35 342.60 5.80 -63.55 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.98 Total: 14.12 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 4.87 Total: -23.20 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.30 Total: -56.54 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -1.16 Total: -32.70 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.90 Total: 45.42 kcal Atomic # 16 Polarization: -9.55 SS G_CDS: -1.10 Total: -10.64 kcal Total: -69.35 5.80 -63.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812663325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.176 kcal (2) G-P(sol) polarization free energy of solvation -69.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds