Wall clock time and date at job start Tue Mar 31 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47275 * 165.53667 * 3 2 1 5 5 C 1.52997 * 109.47387 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46916 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47083 * 179.97438 * 6 5 4 8 8 O 1.20835 * 119.99757 * 0.02562 * 7 6 5 9 9 O 1.34254 * 120.00184 * 179.97438 * 7 6 5 10 10 C 1.35922 * 117.00375 * 185.33870 * 9 7 6 11 11 C 1.38817 * 120.02463 * 246.47514 * 10 9 7 12 12 C 1.38194 * 120.08482 * 179.74189 * 11 10 9 13 13 C 1.38153 * 120.12051 * 0.50611 * 12 11 10 14 14 C 1.38899 * 120.04028 * 359.76957 * 13 12 11 15 15 O 1.35753 * 120.04104 * 179.97438 * 14 13 12 16 16 C 1.34826 * 116.99922 * 185.96753 * 15 14 13 17 17 H 1.08001 * 120.00401 * 354.89598 * 16 15 14 18 18 C 1.38658 * 119.99888 * 174.90274 * 16 15 14 19 19 N 1.31551 * 119.99982 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99943 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47163 * 59.99845 * 20 18 16 22 22 H 1.48501 * 109.46937 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46788 * 299.99763 * 20 18 16 24 24 C 1.38577 * 120.01655 * 66.74292 * 10 9 7 25 25 H 4.44655 * 5.63299 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.47458 * 45.53324 * 3 2 1 27 27 H 1.09000 * 109.47105 * 285.53724 * 3 2 1 28 28 H 1.08999 * 109.47158 * 59.99474 * 4 3 2 29 29 H 1.09000 * 109.47101 * 300.00060 * 4 3 2 30 30 H 1.09006 * 109.47033 * 60.00430 * 5 4 3 31 31 H 1.08993 * 109.47396 * 299.99828 * 5 4 3 32 32 H 1.09001 * 109.46785 * 60.01023 * 6 5 4 33 33 H 1.08993 * 109.47317 * 300.00329 * 6 5 4 34 34 H 1.07998 * 119.96094 * 359.97438 * 11 10 9 35 35 H 1.07996 * 119.94582 * 180.22992 * 12 11 10 36 36 H 1.08004 * 119.98229 * 179.74841 * 13 12 11 37 37 H 0.97000 * 120.00267 * 180.02562 * 19 18 16 38 38 H 1.07996 * 120.06201 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1554 1.3977 -0.3603 5 6 4.6853 1.3985 -0.3597 6 6 5.1946 2.7954 -0.7206 7 6 6.7017 2.7965 -0.7194 8 8 7.3063 1.7837 -0.4572 9 8 7.3724 3.9224 -1.0106 10 6 8.7254 3.8288 -1.1014 11 6 9.5302 4.4751 -0.1732 12 6 10.9058 4.3765 -0.2612 13 6 11.4845 3.6431 -1.2790 14 6 10.6842 2.9990 -2.2138 15 8 11.2529 2.2789 -3.2142 16 6 10.4268 1.7827 -4.1572 17 1 9.3578 1.8943 -4.0516 18 6 10.9497 1.1288 -5.2625 19 7 12.2518 0.9922 -5.3908 20 14 9.8051 0.4407 -6.5686 21 1 8.9999 1.5435 -7.1519 22 1 10.6069 -0.2057 -7.6385 23 1 8.8989 -0.5624 -5.9538 24 6 9.3023 3.0927 -2.1239 25 1 -1.0503 -0.0005 -0.0001 26 1 3.0097 -0.7190 -0.7334 27 1 3.0094 -0.2745 0.9901 28 1 2.7916 2.1173 0.3731 29 1 2.7919 1.6728 -1.3504 30 1 5.0494 0.6788 -1.0929 31 1 5.0484 1.1237 0.6306 32 1 4.8307 3.5154 0.0124 33 1 4.8315 3.0699 -1.7109 34 1 9.0807 5.0528 0.6210 35 1 11.5297 4.8771 0.4643 36 1 12.5600 3.5708 -1.3480 37 1 12.6177 0.5351 -6.1642 38 1 8.6778 2.5924 -2.8492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841345310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:33 Heat of formation + Delta-G solvation = -41.736842 kcal Electronic energy + Delta-G solvation = -21314.189340 eV Core-core repulsion = 17896.127829 eV Total energy + Delta-G solvation = -3418.061511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.119 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.93062 -38.84451 -37.36784 -36.28264 -35.69461 -33.46165 -32.31976 -30.51950 -29.54705 -28.90133 -25.95043 -25.33252 -22.94317 -21.71219 -21.35287 -20.30216 -18.32318 -18.30128 -17.86343 -16.90855 -16.50131 -15.92351 -15.58260 -15.13065 -14.58654 -14.47563 -14.33705 -13.89047 -13.66179 -13.54763 -13.21511 -12.88553 -12.61173 -12.18333 -12.06020 -11.83539 -11.56586 -11.53147 -11.27202 -11.06515 -10.95130 -10.84813 -10.53410 -10.50950 -10.38957 -10.35108 -10.22178 -9.54229 -8.88132 -8.14581 -7.35982 -6.49203 -4.08711 1.76066 2.20625 2.39426 2.53517 2.58160 3.06374 3.11345 3.14379 3.15152 3.93581 4.07691 4.45106 4.55331 4.66448 4.79626 5.02013 5.02678 5.04778 5.18819 5.26767 5.38747 5.44639 5.51663 5.59523 5.71226 5.76731 5.77453 5.95275 5.99597 6.08535 6.14795 6.30719 6.55924 6.89149 7.00189 7.07988 7.13078 7.31794 7.35258 7.59186 7.94229 8.15910 8.95673 9.62134 10.68250 Molecular weight = 288.12amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.003821 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.684965 B = 7325.877281 C = 9279.248971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.182 4.182 3 C -0.016 4.016 4 C -0.113 4.113 5 C -0.112 4.112 6 C -0.109 4.109 7 C 0.450 3.550 8 O -0.483 6.483 9 O -0.298 6.298 10 C 0.122 3.878 11 C -0.212 4.212 12 C -0.064 4.064 13 C -0.189 4.189 14 C 0.165 3.835 15 O -0.170 6.170 16 C -0.393 4.393 17 H 0.090 0.910 18 C 0.042 3.958 19 N -0.860 5.860 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.236 4.236 25 H 0.216 0.784 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.272 0.728 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.144 2.703 9.249 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.182 4.182 3 C -0.053 4.053 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.147 4.147 7 C 0.293 3.707 8 O -0.368 6.368 9 O -0.213 6.213 10 C 0.082 3.918 11 C -0.231 4.231 12 C -0.082 4.082 13 C -0.208 4.208 14 C 0.110 3.890 15 O -0.073 6.073 16 C -0.469 4.469 17 H 0.107 0.893 18 C -0.163 4.163 19 N -0.494 5.494 20 Si 0.765 3.235 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.255 4.255 25 H 0.233 0.767 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.082 0.918 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.513 2.201 9.106 18.986 hybrid contribution -0.786 -0.363 -0.703 1.115 sum -17.300 1.838 8.403 19.320 Atomic orbital electron populations 1.24909 0.95994 1.00991 1.01570 1.23218 0.94645 1.00302 1.00079 1.18773 0.84509 0.98552 1.03443 1.21526 0.94791 0.96070 1.02640 1.21474 0.94407 0.95248 1.03862 1.21379 0.87114 1.00551 1.05655 1.24045 0.91614 0.81369 0.73668 1.90734 1.70285 1.33054 1.42680 1.84504 1.19296 1.37200 1.80328 1.18246 0.79057 0.99214 0.95304 1.20426 0.93445 1.08350 1.00914 1.20490 0.93504 0.97397 0.96858 1.20327 0.99604 1.03396 0.97472 1.19118 0.90328 0.89878 0.89638 1.83995 1.35528 1.57457 1.30317 1.21259 0.89869 1.36280 0.99525 0.89285 1.25285 0.96702 0.96787 0.97515 1.70021 1.10777 1.39356 1.29276 0.85788 0.79125 0.79260 0.79357 1.19403 1.20104 1.19398 1.21180 0.95718 1.06785 1.01858 0.76747 0.89213 0.89310 0.91264 0.91170 0.90360 0.90526 0.87662 0.87513 0.86712 0.85966 0.85882 0.91833 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.81 19.25 29.55 0.57 -1.24 16 2 C -0.18 -1.69 13.34 -37.13 -0.50 -2.19 16 3 C -0.02 -0.13 5.70 -29.52 -0.17 -0.30 16 4 C -0.11 -0.85 5.17 -26.73 -0.14 -0.98 16 5 C -0.11 -1.06 4.50 -26.73 -0.12 -1.18 16 6 C -0.11 -1.10 5.81 -27.88 -0.16 -1.26 16 7 C 0.45 7.21 7.72 36.01 0.28 7.49 16 8 O -0.48 -9.52 15.30 -18.76 -0.29 -9.81 16 9 O -0.30 -5.29 10.04 -23.58 -0.24 -5.53 16 10 C 0.12 2.51 5.34 -39.24 -0.21 2.30 16 11 C -0.21 -3.92 9.98 -39.38 -0.39 -4.31 16 12 C -0.06 -1.16 10.03 -39.63 -0.40 -1.56 16 13 C -0.19 -4.02 9.99 -39.37 -0.39 -4.42 16 14 C 0.16 4.11 6.64 -39.13 -0.26 3.85 16 15 O -0.17 -4.93 9.76 0.05 0.00 -4.93 16 16 C -0.39 -11.21 9.49 30.89 0.29 -10.92 16 17 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 18 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16 19 N -0.86 -25.27 13.67 55.48 0.76 -24.52 16 20 Si 0.94 20.72 29.55 -169.99 -5.02 15.69 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 24 C -0.24 -5.51 8.30 -39.25 -0.33 -5.84 16 25 H 0.22 1.06 7.80 -54.08 -0.42 0.64 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.84 8.10 -51.93 -0.42 0.41 16 31 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.13 3.12 5.64 -52.49 -0.30 2.83 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -33.68 342.60 -6.42 -40.10 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.77 Total: 3.31 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -2.02 Total: -19.49 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.76 Total: -24.52 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.52 Total: -20.26 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.68 -6.42 -40.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.640 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds