Wall clock time and date at job start Tue Mar 31 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38535 * 120.82143 * 2 1 4 4 C 1.38238 * 119.24181 * 180.29597 * 3 2 1 5 5 C 1.50697 * 119.53387 * 179.70782 * 4 3 2 6 6 F 1.39900 * 109.46989 * 185.01924 * 5 4 3 7 7 F 1.39901 * 109.46878 * 305.02065 * 5 4 3 8 8 F 1.39900 * 109.47072 * 65.02282 * 5 4 3 9 9 N 1.31878 * 120.92773 * 359.72495 * 4 3 2 10 10 C 1.31789 * 121.80221 * 0.02562 * 9 4 3 11 11 C 1.38926 * 120.65544 * 0.02562 * 10 9 4 12 12 N 1.39715 * 120.49589 * 179.97438 * 11 10 9 13 13 C 1.46494 * 119.99509 * 0.02562 * 12 11 10 14 14 C 1.53002 * 109.47005 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47351 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46913 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00409 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99553 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00389 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47384 * 59.99994 * 20 18 16 22 22 H 1.48504 * 109.47353 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47211 * 299.99620 * 20 18 16 24 24 H 1.08997 * 109.47073 * 270.21816 * 1 2 3 25 25 H 1.09000 * 109.46607 * 30.22369 * 1 2 3 26 26 H 1.09001 * 109.47064 * 150.21770 * 1 2 3 27 27 H 1.07996 * 120.37863 * 0.02608 * 3 2 1 28 28 H 1.08005 * 119.67155 * 179.97438 * 10 9 4 29 29 H 0.96995 * 120.00141 * 179.72631 * 12 11 10 30 30 H 1.09003 * 109.47636 * 299.99421 * 13 12 11 31 31 H 1.09002 * 109.47518 * 60.00073 * 13 12 11 32 32 H 1.08992 * 109.47234 * 299.99945 * 14 13 12 33 33 H 1.09004 * 109.47291 * 59.99884 * 14 13 12 34 34 H 1.08992 * 109.47085 * 300.00254 * 15 14 13 35 35 H 1.08999 * 109.46457 * 60.00075 * 15 14 13 36 36 H 0.97005 * 120.00521 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1897 0.0000 4 6 3.5987 1.1516 -0.0062 5 6 4.3773 2.4418 -0.0130 6 9 5.7427 2.1618 -0.1339 7 9 3.9653 3.2295 -1.0932 8 9 4.1469 3.1317 1.1821 9 7 4.2450 0.0021 -0.0067 10 6 3.6092 -1.1523 -0.0018 11 6 2.2206 -1.1960 0.0035 12 7 1.5499 -2.4217 0.0082 13 6 2.3113 -3.6732 0.0080 14 6 1.3440 -4.8586 0.0142 15 6 2.1391 -6.1658 0.0133 16 6 1.1863 -7.3333 0.0201 17 1 0.1203 -7.1604 0.0241 18 6 1.6756 -8.6224 0.0211 19 7 2.9737 -8.8330 0.0157 20 14 0.4946 -10.0696 0.0288 21 1 -0.3653 -10.0133 -1.1805 22 1 1.2663 -11.3384 0.0281 23 1 -0.3562 -10.0079 1.2444 24 1 -0.3633 0.0039 1.0276 25 1 -0.3632 0.8880 -0.5173 26 1 -0.3633 -0.8919 -0.5105 27 1 1.6966 2.1361 0.0004 28 1 4.1731 -2.0734 -0.0028 29 1 0.5802 -2.4439 0.0159 30 1 2.9360 -3.7184 -0.8841 31 1 2.9422 -3.7149 0.8959 32 1 0.7196 -4.8134 0.9064 33 1 0.7127 -4.8172 -0.8735 34 1 2.7633 -6.2108 -0.8791 35 1 2.7706 -6.2074 0.9008 36 1 3.3180 -9.7400 0.0160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:23 Heat of formation + Delta-G solvation = -135.408262 kcal Electronic energy + Delta-G solvation = -21877.698867 eV Core-core repulsion = 17946.011469 eV Total energy + Delta-G solvation = -3931.687398 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.16460 -47.71679 -47.60724 -40.66358 -36.90515 -34.44157 -33.46638 -31.94887 -30.37268 -28.04132 -26.99803 -25.52087 -23.92293 -22.20791 -21.80797 -20.50734 -18.56746 -18.48113 -18.28919 -17.36402 -16.74826 -16.16605 -15.27804 -15.10102 -14.68047 -14.62060 -14.55221 -14.33155 -14.27749 -14.10131 -13.81887 -13.78577 -13.67989 -13.14703 -12.93564 -12.66287 -12.37536 -12.35318 -11.95968 -11.71943 -11.04842 -10.88724 -10.68196 -10.62725 -9.93352 -9.83292 -9.66872 -9.60412 -9.26030 -8.46445 -7.76163 -6.11231 -4.14904 0.84326 1.02806 2.50492 3.20767 3.25839 3.31299 3.33055 3.39849 3.59061 3.91703 4.36467 4.38689 4.44349 4.50267 4.76455 4.83633 5.05937 5.24844 5.28645 5.31374 5.40823 5.49317 5.55153 5.73270 5.84588 5.88703 6.20837 6.37943 6.44746 6.80532 7.01035 7.41189 7.50145 7.61483 7.69815 7.86051 8.26896 8.91150 9.50060 10.99914 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.036029 B = 0.002631 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.964985 B =10638.249520 C =11219.503114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.135 4.135 3 C -0.070 4.070 4 C -0.044 4.044 5 C 0.528 3.472 6 F -0.167 7.167 7 F -0.178 7.178 8 F -0.178 7.178 9 N -0.404 5.404 10 C 0.034 3.966 11 C 0.207 3.793 12 N -0.720 5.720 13 C 0.110 3.890 14 C -0.120 4.120 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.140 0.860 28 H 0.168 0.832 29 H 0.403 0.597 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.460 21.665 -0.018 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.148 4.148 3 C -0.091 4.091 4 C -0.184 4.184 5 C 0.473 3.527 6 F -0.148 7.148 7 F -0.160 7.160 8 F -0.160 7.160 9 N -0.112 5.112 10 C -0.132 4.132 11 C 0.095 3.905 12 N -0.345 5.345 13 C -0.013 4.013 14 C -0.158 4.158 15 C -0.013 4.013 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.158 0.842 28 H 0.185 0.815 29 H 0.240 0.760 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.288 21.350 -0.028 21.388 hybrid contribution -1.671 -0.732 0.012 1.824 sum -2.959 20.618 -0.016 20.829 Atomic orbital electron populations 1.20622 0.89614 1.03267 1.02821 1.19713 0.96890 0.90919 1.07236 1.21315 0.92854 0.98930 0.96008 1.20363 0.91297 0.92165 1.14613 1.17826 0.77800 0.83559 0.73490 1.93208 1.32428 1.93580 1.95555 1.93197 1.90293 1.76515 1.55984 1.93204 1.94439 1.81359 1.46986 1.66957 1.40321 0.97169 1.06717 1.22356 0.89738 0.95738 1.05346 1.18993 0.93221 0.86836 0.91475 1.45286 1.09097 1.02678 1.77433 1.21875 0.95729 0.82148 1.01553 1.21871 0.98074 0.94779 1.01107 1.19022 0.95288 0.89280 0.97663 1.21136 0.92953 0.90924 1.51438 0.92707 1.25016 0.95111 0.99096 0.95105 1.69938 1.11695 1.21340 1.50217 0.86635 0.80909 0.81697 0.78633 1.20216 1.21191 1.20208 0.90658 0.90742 0.91331 0.84247 0.81475 0.75985 0.91601 0.91608 0.92580 0.92594 0.96224 0.96227 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.64 36.01 0.35 -0.45 16 2 C -0.14 -1.42 5.93 -104.13 -0.62 -2.04 16 3 C -0.07 -0.75 9.30 -39.47 -0.37 -1.11 16 4 C -0.04 -0.57 6.26 -82.57 -0.52 -1.09 16 5 C 0.53 6.45 3.31 36.00 0.12 6.56 16 6 F -0.17 -2.25 16.85 2.25 0.04 -2.21 16 7 F -0.18 -2.05 17.15 2.25 0.04 -2.01 16 8 F -0.18 -2.10 17.28 2.25 0.04 -2.06 16 9 N -0.40 -5.75 9.72 -9.30 -0.09 -5.84 16 10 C 0.03 0.45 10.49 -17.32 -0.18 0.27 16 11 C 0.21 2.49 6.66 -83.63 -0.56 1.94 16 12 N -0.72 -8.52 5.65 -58.52 -0.33 -8.86 16 13 C 0.11 1.55 4.93 -4.04 -0.02 1.53 16 14 C -0.12 -2.11 5.27 -26.73 -0.14 -2.25 16 15 C 0.03 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.53 -14.07 9.11 -34.44 -0.31 -14.38 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 20 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 26 H 0.07 0.49 6.67 -51.93 -0.35 0.14 16 27 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.17 2.06 6.76 -52.48 -0.35 1.70 16 29 H 0.40 4.18 6.62 -40.82 -0.27 3.91 16 30 H 0.07 0.93 7.97 -51.93 -0.41 0.52 16 31 H 0.07 0.93 7.97 -51.93 -0.41 0.52 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -29.36 321.06 -6.53 -35.90 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.30 Total: -1.41 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.48 Total: -9.04 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.32 Total: -39.83 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.12 Total: -6.28 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.36 -6.53 -35.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.513 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds