Wall clock time and date at job start Tue Mar 31 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47321 * 2 1 4 4 C 1.35890 * 117.00357 * 179.97438 * 3 2 1 5 5 C 1.38888 * 119.96674 * 0.02562 * 4 3 2 6 6 C 1.38514 * 120.21620 * 179.97438 * 5 4 3 7 7 F 1.35103 * 119.92274 * 180.02562 * 6 5 4 8 8 C 1.38202 * 120.15810 * 0.02562 * 6 5 4 9 9 C 1.39625 * 119.93179 * 0.02562 * 8 6 5 10 10 C 1.47943 * 120.10640 * 180.02562 * 9 8 6 11 11 C 1.40424 * 120.79047 * 359.97438 * 10 9 8 12 12 N 1.31588 * 119.09362 * 180.02562 * 11 10 9 13 13 C 1.33646 * 120.83359 * 0.02562 * 12 11 10 14 14 C 1.41086 * 119.13935 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99648 * 6.27899 * 14 13 12 16 16 C 1.40133 * 120.00308 * 186.27591 * 14 13 12 17 17 N 1.30662 * 120.00185 * 353.59002 * 16 14 13 18 18 Si 1.86802 * 120.00092 * 173.31764 * 16 14 13 19 19 H 1.48499 * 109.47390 * 94.98430 * 18 16 14 20 20 H 1.48506 * 109.47260 * 214.98735 * 18 16 14 21 21 H 1.48502 * 109.46957 * 334.98481 * 18 16 14 22 22 N 1.33653 * 121.72927 * 0.25476 * 13 12 11 23 23 C 1.31592 * 120.82793 * 359.47716 * 22 13 12 24 24 C 1.38424 * 119.97162 * 180.32163 * 4 3 2 25 25 H 1.09001 * 109.47182 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47146 * 299.99731 * 1 2 3 27 27 H 1.09000 * 109.46759 * 59.99941 * 1 2 3 28 28 H 1.09009 * 109.47215 * 240.00222 * 2 1 3 29 29 H 1.08991 * 109.46918 * 120.00294 * 2 1 3 30 30 H 1.07997 * 119.89412 * 0.02562 * 5 4 3 31 31 H 1.07995 * 120.03300 * 180.02562 * 8 6 5 32 32 H 1.08002 * 120.45370 * 0.04900 * 11 10 9 33 33 H 0.96997 * 120.00243 * 179.97438 * 17 16 14 34 34 H 1.08000 * 120.45196 * 180.23475 * 23 22 13 35 35 H 1.07998 * 120.07441 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1990 0.4234 0.0005 6 6 5.5730 0.5990 0.0005 7 9 6.3899 -0.4771 0.0000 8 6 6.1103 1.8723 0.0011 9 6 5.2663 2.9846 0.0022 10 6 5.8372 4.3494 0.0022 11 6 7.2275 4.5469 0.0017 12 7 7.6992 5.7754 0.0023 13 6 6.8735 6.8262 0.0039 14 6 7.4179 8.1278 0.0050 15 1 8.4840 8.2672 -0.0978 16 6 6.5756 9.2396 0.1393 17 7 5.2786 9.0807 0.1375 18 14 7.3069 10.9481 0.3284 19 1 7.3770 11.6065 -1.0007 20 1 6.4520 11.7548 1.2360 21 1 8.6731 10.8411 0.9005 22 7 5.5454 6.6765 0.0100 23 6 5.0018 5.4781 0.0044 24 6 3.8820 2.8047 0.0073 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.7838 -0.5736 -0.0003 31 1 7.1818 2.0068 0.0007 32 1 7.9005 3.7022 0.0005 33 1 4.6956 9.8502 0.2309 34 1 3.9278 5.3642 0.0055 35 1 3.2248 3.6617 0.0117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241024480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:22 Heat of formation + Delta-G solvation = -22.530681 kcal Electronic energy + Delta-G solvation = -21228.596961 eV Core-core repulsion = 17720.200738 eV Total energy + Delta-G solvation = -3508.396223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.67293 -39.93613 -39.03527 -37.07125 -34.10945 -32.18489 -32.11405 -31.60414 -29.31900 -28.96566 -26.34587 -23.96400 -23.40706 -22.45482 -21.56823 -20.63656 -18.23482 -18.03275 -16.67450 -16.21587 -16.16802 -16.02213 -15.44270 -15.28184 -14.70778 -14.58656 -14.20667 -13.80264 -13.34900 -13.10180 -13.02489 -12.78745 -12.63151 -12.37667 -11.75310 -11.72607 -11.55776 -11.41401 -11.20082 -11.04953 -10.87563 -10.72798 -10.45849 -9.73442 -9.36644 -9.35199 -9.00532 -8.02765 -7.55206 -7.51339 -6.80601 -4.93538 1.24438 1.60834 2.55397 2.85546 2.92546 2.95633 3.01126 3.20333 3.69575 4.02392 4.48574 4.49686 4.78243 4.82921 5.04561 5.12474 5.25328 5.30617 5.39424 5.58765 5.62330 5.68695 5.74085 5.78563 5.83822 5.89664 6.12454 6.33130 6.38256 6.48664 6.57924 6.74126 6.88207 7.01724 7.28201 7.44024 7.55961 7.90822 8.22887 8.31329 8.88487 9.84205 10.04054 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.023893 B = 0.003547 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.603066 B = 7891.879280 C = 9038.425394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.313 6.313 4 C 0.168 3.832 5 C -0.288 4.288 6 C 0.146 3.854 7 F -0.145 7.145 8 C -0.218 4.218 9 C 0.106 3.894 10 C -0.339 4.339 11 C 0.197 3.803 12 N -0.592 5.592 13 C 0.376 3.624 14 C -0.366 4.366 15 H 0.099 0.901 16 C 0.058 3.942 17 N -0.690 5.690 18 Si 0.924 3.076 19 H -0.265 1.265 20 H -0.271 1.271 21 H -0.256 1.256 22 N -0.509 5.509 23 C 0.191 3.809 24 C -0.190 4.190 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.282 0.718 34 H 0.135 0.865 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.458 -11.182 0.079 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.227 6.227 4 C 0.123 3.877 5 C -0.308 4.308 6 C 0.127 3.873 7 F -0.124 7.124 8 C -0.237 4.237 9 C 0.104 3.896 10 C -0.349 4.349 11 C 0.021 3.979 12 N -0.310 5.310 13 C 0.146 3.854 14 C -0.398 4.398 15 H 0.117 0.883 16 C -0.172 4.172 17 N -0.309 5.309 18 Si 0.747 3.253 19 H -0.190 1.190 20 H -0.196 1.196 21 H -0.179 1.179 22 N -0.225 5.225 23 C 0.012 3.988 24 C -0.209 4.209 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.339 -9.793 0.103 11.666 hybrid contribution 0.003 -0.854 0.085 0.858 sum -6.335 -10.647 0.188 12.391 Atomic orbital electron populations 1.21772 0.92901 1.02615 1.03593 1.22753 0.95688 0.82350 1.01378 1.86087 1.19083 1.28891 1.88630 1.18464 0.81634 0.93258 0.94342 1.20835 0.92404 0.98943 1.18582 1.17200 0.87150 0.82922 1.00021 1.91455 1.72596 1.54474 1.93875 1.20996 1.00904 0.90137 1.11682 1.18188 0.90757 0.91988 0.88676 1.19613 0.95857 0.92009 1.27451 1.22723 0.91680 0.94664 0.88877 1.68679 1.40185 0.98931 1.23184 1.19982 0.84670 0.92273 0.88523 1.19600 0.95824 0.87782 1.36599 0.88299 1.26281 0.94735 1.02285 0.93880 1.70111 1.03892 1.32586 1.24326 0.86023 0.80402 0.79516 0.79407 1.18982 1.19610 1.17945 1.69372 1.12944 1.21862 1.18281 1.23109 0.98839 0.88128 0.88674 1.20429 0.94688 0.94570 1.11234 0.90586 0.91490 0.91494 0.92115 0.92115 0.85334 0.84995 0.84829 0.90700 0.84767 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.05 0.55 5.46 37.16 0.20 0.75 16 3 O -0.31 -4.45 10.13 -19.39 -0.20 -4.65 16 4 C 0.17 2.65 6.68 -39.27 -0.26 2.39 16 5 C -0.29 -4.28 9.02 -39.24 -0.35 -4.64 16 6 C 0.15 2.35 7.29 -39.49 -0.29 2.06 16 7 F -0.15 -2.26 17.26 2.25 0.04 -2.22 16 8 C -0.22 -3.72 9.43 -39.08 -0.37 -4.09 16 9 C 0.11 1.98 5.88 -104.90 -0.62 1.36 16 10 C -0.34 -7.29 5.94 -104.27 -0.62 -7.91 16 11 C 0.20 4.38 10.70 -16.83 -0.18 4.20 16 12 N -0.59 -15.11 10.34 -12.41 -0.13 -15.23 16 13 C 0.38 10.17 7.35 -158.16 -1.16 9.01 16 14 C -0.37 -9.45 9.35 -37.79 -0.35 -9.80 16 15 H 0.10 2.43 7.86 -52.48 -0.41 2.02 16 16 C 0.06 1.36 5.49 -17.34 -0.10 1.27 16 17 N -0.69 -17.01 11.43 55.56 0.64 -16.37 16 18 Si 0.92 17.22 29.57 -169.99 -5.03 12.19 16 19 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 20 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 21 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 22 N -0.51 -13.47 7.86 -12.41 -0.10 -13.57 16 23 C 0.19 4.40 10.70 -16.83 -0.18 4.22 16 24 C -0.19 -3.29 9.39 -39.01 -0.37 -3.66 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.57 7.66 -51.92 -0.40 0.17 16 29 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 30 H 0.13 1.60 6.28 -52.49 -0.33 1.27 16 31 H 0.13 2.11 6.28 -52.49 -0.33 1.78 16 32 H 0.13 2.51 6.33 -52.49 -0.33 2.18 16 33 H 0.28 6.16 8.29 -40.82 -0.34 5.83 16 34 H 0.14 2.72 6.33 -52.49 -0.33 2.39 16 35 H 0.13 2.24 6.28 -52.49 -0.33 1.91 16 LS Contribution 308.23 15.07 4.64 4.64 Total: -1.00 -28.55 308.23 -7.65 -36.20 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -3.26 Total: 4.66 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -4.26 Total: -5.66 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.41 Total: -45.17 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.20 Total: -4.65 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.55 -7.65 -36.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241024480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.674 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds