Wall clock time and date at job start Tue Mar 31 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35631 * 116.99655 * 179.97438 * 3 2 1 5 5 N 1.32358 * 119.53097 * 0.02562 * 4 3 2 6 6 C 1.31696 * 121.82547 * 179.97438 * 5 4 3 7 7 C 1.39644 * 120.66249 * 0.02562 * 6 5 4 8 8 C 1.47719 * 120.50016 * 179.97438 * 7 6 5 9 9 C 1.39738 * 120.65387 * 129.99153 * 8 7 6 10 10 C 1.38340 * 118.47521 * 179.97438 * 9 8 7 11 11 C 1.39086 * 119.73415 * 0.02562 * 10 9 8 12 12 N 1.31272 * 121.35038 * 0.02562 * 11 10 9 13 13 C 1.33712 * 121.63594 * 359.71814 * 12 11 10 14 14 C 1.40760 * 119.94274 * 180.26814 * 13 12 11 15 15 H 1.08000 * 120.00044 * 180.27366 * 14 13 12 16 16 C 1.40128 * 120.00197 * 0.26613 * 14 13 12 17 17 N 1.30708 * 119.99875 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00330 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46873 * 60.00171 * 18 16 14 20 20 H 1.48494 * 109.47014 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47017 * 300.00851 * 18 16 14 22 22 C 1.40272 * 119.00359 * 359.97438 * 7 6 5 23 23 C 1.38184 * 118.33145 * 359.75078 * 22 7 6 24 24 F 1.35100 * 120.38092 * 180.26853 * 23 22 7 25 25 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 30 30 H 1.08008 * 119.66983 * 179.97438 * 6 5 4 31 31 H 1.08000 * 120.76693 * 0.02562 * 9 8 7 32 32 H 1.08005 * 120.13551 * 179.97438 * 10 9 8 33 33 H 1.07999 * 119.32029 * 179.97438 * 11 10 9 34 34 H 0.97007 * 120.00362 * 179.97438 * 17 16 14 35 35 H 1.07993 * 120.83334 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3509 1.5251 0.0005 5 7 4.1485 0.4688 0.0005 6 6 5.4600 0.5890 0.0005 7 6 6.0596 1.8501 0.0011 8 6 7.5310 1.9808 0.0017 9 6 8.1727 2.8135 -0.9188 10 6 9.5526 2.9025 -0.8777 11 6 10.2632 2.1698 0.0671 12 7 9.6516 1.3892 0.9272 13 6 8.3202 1.2663 0.9393 14 6 7.7009 0.4233 1.8812 15 1 6.6259 0.3200 1.8889 16 6 8.4792 -0.2820 2.8088 17 7 9.7802 -0.1566 2.7997 18 14 7.6574 -1.4002 4.0593 19 1 6.8959 -2.4600 3.3505 20 1 8.6932 -2.0257 4.9200 21 1 6.7296 -0.6033 4.9016 22 6 5.2437 2.9911 0.0011 23 6 3.8728 2.8171 -0.0047 24 9 3.0482 3.8872 -0.0104 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 6.0780 -0.2968 0.0009 31 1 7.6044 3.3755 -1.6452 32 1 10.0761 3.5378 -1.5769 33 1 11.3404 2.2439 0.0930 34 1 10.3191 -0.6446 3.4420 35 1 5.6760 3.9808 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243772663.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:51 Heat of formation + Delta-G solvation = -35.583816 kcal Electronic energy + Delta-G solvation = -21979.413494 eV Core-core repulsion = 18470.451244 eV Total energy + Delta-G solvation = -3508.962250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.93242 -41.57357 -40.11580 -38.86794 -35.59915 -34.31195 -32.99361 -32.17481 -32.13703 -29.65397 -27.68514 -25.59526 -24.66761 -23.61440 -22.98364 -22.23593 -19.70918 -19.34890 -18.54651 -18.29545 -17.62466 -17.25545 -16.40430 -16.39221 -16.11969 -16.04872 -15.70835 -14.92597 -14.61344 -14.49950 -14.23002 -14.00176 -13.86805 -13.52412 -13.33789 -13.25215 -12.91865 -12.88152 -12.78831 -12.48299 -12.17477 -11.87656 -11.64113 -11.25838 -10.99703 -10.78934 -10.15192 -9.71928 -9.52786 -8.98595 -8.34310 -6.51840 -0.13747 0.00927 0.91552 1.17631 1.39097 1.48944 1.53300 1.87380 2.18492 2.58982 2.81863 3.04892 3.28454 3.64634 3.89418 3.96296 4.08700 4.11500 4.22725 4.31294 4.39785 4.46893 4.55215 4.79521 4.81805 4.85450 4.94983 4.95209 5.15047 5.18334 5.20666 5.37998 5.46587 5.67503 5.86810 6.12117 6.15367 6.26649 6.64861 6.70478 6.93242 8.15446 8.37629 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.014316 B = 0.005871 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.400449 B = 4768.101944 C = 6309.460848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.058 3.942 3 O -0.314 6.314 4 C 0.265 3.735 5 N -0.515 5.515 6 C 0.134 3.866 7 C -0.041 4.041 8 C -0.244 4.244 9 C -0.033 4.033 10 C -0.309 4.309 11 C 0.116 3.884 12 N -0.519 5.519 13 C 0.243 3.757 14 C -0.448 4.448 15 H 0.093 0.907 16 C 0.031 3.969 17 N -0.742 5.742 18 Si 0.968 3.032 19 H -0.255 1.255 20 H -0.266 1.266 21 H -0.265 1.265 22 C -0.081 4.081 23 C 0.026 3.974 24 F -0.130 7.130 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.167 0.833 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.282 0.718 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 0.235 -3.729 11.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.016 4.016 3 O -0.223 6.223 4 C 0.085 3.915 5 N -0.237 5.237 6 C -0.022 4.022 7 C -0.044 4.044 8 C -0.249 4.249 9 C -0.057 4.057 10 C -0.332 4.332 11 C -0.051 4.051 12 N -0.231 5.231 13 C 0.120 3.880 14 C -0.478 4.478 15 H 0.111 0.889 16 C -0.192 4.192 17 N -0.363 5.363 18 Si 0.789 3.211 19 H -0.179 1.179 20 H -0.190 1.190 21 H -0.190 1.190 22 C -0.107 4.107 23 C 0.004 3.996 24 F -0.109 7.109 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.185 0.815 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.093 0.907 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.593 -0.950 -2.987 11.047 hybrid contribution -0.007 0.895 -0.032 0.896 sum -10.600 -0.054 -3.018 11.022 Atomic orbital electron populations 1.21827 0.90540 1.04390 1.03372 1.22872 0.96540 0.79808 1.02427 1.86220 1.15488 1.32463 1.88116 1.19942 0.85410 0.88794 0.97365 1.67382 1.06591 1.31103 1.18647 1.22835 0.88078 0.97927 0.93376 1.19351 0.93531 0.92421 0.99090 1.19233 0.90718 1.09747 1.05188 1.21269 0.94603 0.94314 0.95513 1.21591 0.94665 1.10283 1.06630 1.23096 1.00041 0.91352 0.90618 1.68727 1.10137 1.20260 1.23948 1.18850 0.87908 0.90396 0.90852 1.19951 0.95245 1.20875 1.11732 0.88937 1.26875 0.95123 0.97830 0.99417 1.70174 1.06571 1.30506 1.29039 0.85450 0.79025 0.78654 0.77968 1.17878 1.18966 1.18973 1.21740 0.89596 1.01161 0.98217 1.17496 0.88241 0.81654 1.12200 1.91470 1.71508 1.53376 1.94566 0.91672 0.91418 0.87890 0.92031 0.91613 0.81547 0.85369 0.85245 0.84331 0.90748 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 10.28 71.98 0.74 -1.75 16 2 C 0.06 1.45 6.02 71.98 0.43 1.89 16 3 O -0.31 -10.08 9.98 -89.44 -0.89 -10.97 16 4 C 0.26 9.39 7.50 84.88 0.64 10.02 16 5 N -0.51 -18.82 9.18 -307.44 -2.82 -21.64 16 6 C 0.13 5.18 8.75 85.05 0.74 5.92 16 7 C -0.04 -1.61 5.03 -19.94 -0.10 -1.71 16 8 C -0.24 -10.76 5.55 -19.51 -0.11 -10.86 16 9 C -0.03 -1.29 9.69 22.66 0.22 -1.07 16 10 C -0.31 -12.18 10.10 22.50 0.23 -11.95 16 11 C 0.12 5.18 11.17 84.98 0.95 6.13 16 12 N -0.52 -27.10 7.85 -188.41 -1.48 -28.58 16 13 C 0.24 12.41 6.56 40.37 0.26 12.68 16 14 C -0.45 -22.50 7.98 23.35 0.19 -22.32 16 15 H 0.09 4.41 5.25 -2.91 -0.02 4.40 16 16 C 0.03 1.52 5.50 85.32 0.47 1.99 16 17 N -0.74 -37.92 11.46 21.86 0.25 -37.67 16 18 Si 0.97 36.80 29.56 68.60 2.03 38.82 16 19 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 20 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 21 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 22 C -0.08 -2.85 9.69 22.75 0.22 -2.63 16 23 C 0.03 0.91 7.34 22.52 0.17 1.08 16 24 F -0.13 -4.38 17.12 44.97 0.77 -3.61 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 29 H 0.07 1.62 8.10 -2.39 -0.02 1.60 16 30 H 0.17 6.56 7.25 -2.91 -0.02 6.54 16 31 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.14 5.43 8.06 -2.91 -0.02 5.41 16 34 H 0.28 13.07 8.29 -92.70 -0.77 12.30 16 35 H 0.16 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -58.44 311.27 4.03 -54.41 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 1.12 Total: 21.82 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 5.05 Total: -12.59 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -4.05 Total: -87.89 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.89 Total: -10.97 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.77 Total: -3.61 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.82 kcal Total: -58.44 4.03 -54.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243772663.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.826 kcal (2) G-P(sol) polarization free energy of solvation -58.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds