Wall clock time and date at job start Tue Mar 31 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46960 * 2 1 4 4 C 1.35680 * 117.00028 * 180.02562 * 3 2 1 5 5 N 1.32279 * 119.56477 * 0.02562 * 4 3 2 6 6 C 1.31796 * 121.80257 * 180.02562 * 5 4 3 7 7 C 1.39217 * 120.70673 * 359.97438 * 6 5 4 8 8 C 1.48328 * 120.46437 * 179.97438 * 7 6 5 9 9 C 1.40062 * 120.82390 * 180.02562 * 8 7 6 10 10 C 1.38481 * 119.42594 * 180.02562 * 9 8 7 11 11 N 1.31493 * 121.14625 * 359.97438 * 10 9 8 12 12 C 1.33658 * 121.79741 * 0.02562 * 11 10 9 13 13 C 1.41430 * 119.77447 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00137 * 180.02562 * 13 12 11 15 15 C 1.40037 * 120.00173 * 359.72274 * 13 12 11 16 16 N 1.30744 * 119.99612 * 0.27901 * 15 13 12 17 17 Si 1.86803 * 120.00055 * 180.27344 * 15 13 12 18 18 H 1.48498 * 109.46811 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46768 * 120.00070 * 17 15 13 20 20 H 1.48498 * 109.47283 * 240.00322 * 17 15 13 21 21 C 1.39345 * 120.82808 * 0.27487 * 8 7 6 22 22 C 1.39913 * 119.06493 * 0.25322 * 7 6 5 23 23 C 1.38321 * 118.36009 * 359.50323 * 22 7 6 24 24 F 1.35102 * 120.40310 * 180.24279 * 23 22 7 25 25 H 1.09000 * 109.47009 * 299.99414 * 1 2 3 26 26 H 1.08994 * 109.47492 * 60.00004 * 1 2 3 27 27 H 1.09006 * 109.46867 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46729 * 240.00143 * 2 1 3 29 29 H 1.08997 * 109.47210 * 120.00435 * 2 1 3 30 30 H 1.08000 * 119.64519 * 180.02562 * 6 5 4 31 31 H 1.08008 * 120.28833 * 359.97438 * 9 8 7 32 32 H 1.07996 * 119.42410 * 179.97438 * 10 9 8 33 33 H 0.97000 * 119.99125 * 179.97438 * 16 15 13 34 34 H 1.07998 * 120.57994 * 359.97438 * 21 8 7 35 35 H 1.08006 * 120.82104 * 179.75109 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 -0.0005 5 7 4.1493 0.4700 -0.0015 6 6 5.4616 0.5916 -0.0016 7 6 6.0591 1.8490 -0.0011 8 6 7.5366 1.9796 -0.0006 9 6 8.1456 3.2409 0.0004 10 6 9.5276 3.3291 0.0003 11 7 10.2780 2.2494 -0.0002 12 6 9.7471 1.0227 -0.0012 13 6 10.5947 -0.1094 -0.0023 14 1 10.1697 -1.1023 -0.0035 15 6 11.9852 0.0569 -0.0082 16 7 12.4997 1.2588 -0.0072 17 14 13.1047 -1.4385 -0.0173 18 1 12.2805 -2.6738 -0.0175 19 1 13.9562 -1.4119 -1.2337 20 1 13.9672 -1.4186 1.1913 21 6 8.3532 0.8506 -0.0064 22 6 5.2462 2.9878 0.0048 23 6 3.8737 2.8154 -0.0005 24 9 3.0501 3.8863 -0.0001 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 6.0801 -0.2938 -0.0029 31 1 7.5426 4.1370 0.0004 32 1 9.9971 4.3017 0.0007 33 1 13.4629 1.3739 -0.0109 34 1 7.9219 -0.1395 -0.0109 35 1 5.6796 3.9771 0.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243772680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:02 Heat of formation + Delta-G solvation = -19.077700 kcal Electronic energy + Delta-G solvation = -21261.955252 eV Core-core repulsion = 17753.708761 eV Total energy + Delta-G solvation = -3508.246491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.77374 -40.47314 -38.62652 -37.65889 -33.96188 -32.86011 -32.06225 -31.11032 -30.06736 -28.38617 -25.95334 -24.44703 -23.72952 -22.54248 -21.24044 -20.81118 -18.63073 -17.87674 -17.31845 -16.58242 -16.44064 -15.75503 -15.36936 -15.33510 -14.56747 -14.18216 -14.05394 -13.68096 -13.67505 -13.17598 -13.10532 -12.75715 -12.69759 -12.40662 -12.14701 -12.01959 -11.62886 -11.32061 -11.26101 -10.89230 -10.84802 -10.60128 -10.01240 -9.99615 -9.64477 -9.43562 -8.85828 -7.79920 -7.70305 -7.56841 -6.51409 -4.64932 0.92079 1.10439 2.64152 2.84604 2.85644 3.04210 3.08096 3.10321 3.86928 3.89059 4.11374 4.37274 4.66755 4.73942 4.85493 4.90129 5.03282 5.15065 5.26378 5.51211 5.58931 5.65912 5.78566 5.82673 5.86633 5.99028 6.10796 6.25575 6.48888 6.57430 6.75684 7.00764 7.15401 7.18583 7.36321 7.50389 7.73652 7.86908 8.11086 8.52594 8.78002 9.98435 10.20591 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.003458 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.664132 B = 8096.077880 C = 9115.287741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 O -0.305 6.305 4 C 0.279 3.721 5 N -0.512 5.512 6 C 0.133 3.867 7 C -0.070 4.070 8 C 0.002 3.998 9 C -0.305 4.305 10 C 0.129 3.871 11 N -0.481 5.481 12 C 0.254 3.746 13 C -0.427 4.427 14 H 0.086 0.914 15 C 0.068 3.932 16 N -0.712 5.712 17 Si 0.908 3.092 18 H -0.259 1.259 19 H -0.272 1.272 20 H -0.272 1.272 21 C -0.250 4.250 22 C -0.074 4.074 23 C 0.032 3.968 24 F -0.129 7.129 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.173 0.827 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.274 0.726 34 H 0.105 0.895 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.697 -1.262 0.005 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.213 6.213 4 C 0.099 3.901 5 N -0.234 5.234 6 C -0.023 4.023 7 C -0.073 4.073 8 C -0.004 4.004 9 C -0.329 4.329 10 C -0.037 4.037 11 N -0.193 5.193 12 C 0.129 3.871 13 C -0.459 4.459 14 H 0.104 0.896 15 C -0.158 4.158 16 N -0.333 5.333 17 Si 0.732 3.268 18 H -0.183 1.183 19 H -0.198 1.198 20 H -0.198 1.198 21 C -0.273 4.273 22 C -0.100 4.100 23 C 0.010 3.990 24 F -0.107 7.107 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.190 0.810 31 H 0.115 0.885 32 H 0.139 0.861 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.219 -1.717 0.003 13.330 hybrid contribution -0.146 0.186 -0.007 0.237 sum -13.365 -1.531 -0.004 13.452 Atomic orbital electron populations 1.21816 0.93093 1.02786 1.03275 1.22612 0.94604 0.81027 1.02684 1.86244 1.16187 1.30732 1.88095 1.19785 0.84895 0.88748 0.96694 1.67393 1.06704 1.30990 1.18315 1.22754 0.88244 0.97746 0.93533 1.19784 0.94911 0.92296 1.00287 1.18285 0.88089 0.94590 0.99475 1.21304 0.96202 0.95147 1.20204 1.22469 0.89812 0.97618 0.93805 1.68743 1.36892 0.97185 1.16510 1.18548 0.88613 0.91375 0.88519 1.19697 0.90600 0.93103 1.42449 0.89587 1.26091 0.99239 0.96913 0.93575 1.70137 1.12807 1.22326 1.28051 0.86258 0.80038 0.81847 0.78651 1.18303 1.19765 1.19756 1.21826 0.94929 0.96103 1.14476 1.21638 0.89708 1.01439 0.97217 1.17496 0.88255 0.81664 1.11611 1.91495 1.71497 1.53297 1.94444 0.91698 0.91692 0.90302 0.91505 0.91506 0.81018 0.88463 0.86088 0.91503 0.87726 0.82590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.87 16 2 C 0.07 0.74 6.03 37.16 0.22 0.97 16 3 O -0.30 -4.46 9.98 -18.74 -0.19 -4.65 16 4 C 0.28 4.45 7.50 -17.00 -0.13 4.32 16 5 N -0.51 -8.16 9.19 -12.99 -0.12 -8.28 16 6 C 0.13 2.17 10.61 -17.20 -0.18 1.99 16 7 C -0.07 -1.24 5.89 -104.75 -0.62 -1.85 16 8 C 0.00 0.05 5.91 -104.65 -0.62 -0.57 16 9 C -0.31 -6.34 9.53 -38.81 -0.37 -6.71 16 10 C 0.13 2.94 11.17 -17.61 -0.20 2.74 16 11 N -0.48 -12.65 7.85 -11.21 -0.09 -12.74 16 12 C 0.25 6.55 6.55 -85.03 -0.56 5.99 16 13 C -0.43 -10.84 9.14 -37.69 -0.34 -11.18 16 14 H 0.09 2.02 7.85 -52.49 -0.41 1.61 16 15 C 0.07 1.65 5.50 -17.34 -0.10 1.55 16 16 N -0.71 -18.28 11.46 55.55 0.64 -17.65 16 17 Si 0.91 17.80 29.56 -169.99 -5.02 12.78 16 18 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.25 -5.63 9.23 -38.34 -0.35 -5.99 16 22 C -0.07 -1.18 9.53 -38.92 -0.37 -1.55 16 23 C 0.03 0.51 7.34 -39.19 -0.29 0.22 16 24 F -0.13 -2.02 17.12 2.25 0.04 -1.98 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.17 2.57 6.30 -52.49 -0.33 2.23 16 31 H 0.10 1.73 6.38 -52.48 -0.34 1.40 16 32 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 33 H 0.27 6.34 8.29 -40.82 -0.34 6.00 16 34 H 0.10 2.10 6.35 -52.49 -0.33 1.76 16 35 H 0.16 2.25 6.40 -52.48 -0.34 1.91 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -28.26 310.93 -6.99 -35.25 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -3.41 Total: 3.52 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -3.52 Total: -10.94 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.43 Total: -38.66 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.19 Total: -4.65 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.02 Total: 12.78 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.26 -6.99 -35.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243772680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.174 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds