Wall clock time and date at job start Tue Mar 31 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47383 * 308.65457 * 3 2 1 5 5 N 1.46902 * 109.47150 * 181.87842 * 4 3 2 6 6 C 1.46900 * 110.99635 * 76.07098 * 5 4 3 7 7 C 1.50705 * 109.46866 * 195.84624 * 6 5 4 8 8 H 1.08000 * 119.99742 * 355.41413 * 7 6 5 9 9 C 1.37872 * 120.00068 * 175.41271 * 7 6 5 10 10 N 1.31519 * 120.00035 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00055 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47268 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47518 * 120.00359 * 11 9 7 14 14 H 1.48504 * 109.47267 * 240.00131 * 11 9 7 15 15 C 1.46897 * 111.00021 * 200.02530 * 5 4 3 16 16 C 1.53007 * 109.46949 * 66.04304 * 15 5 4 17 17 H 1.08992 * 115.55296 * 330.72388 * 16 15 5 18 18 C 1.52994 * 117.49533 * 185.01103 * 16 15 5 19 19 H 1.09008 * 117.49766 * 145.02610 * 18 16 15 20 20 C 1.50703 * 117.50424 * 0.02562 * 18 16 15 21 21 O 1.20827 * 119.99462 * 0.02562 * 20 18 16 22 22 O 1.34220 * 120.00330 * 179.97438 * 20 18 16 23 23 C 1.53000 * 60.00118 * 252.51714 * 18 16 15 24 24 F 1.39899 * 117.49779 * 252.50877 * 23 18 16 25 25 F 1.39897 * 117.51731 * 107.48716 * 23 18 16 26 26 H 1.09003 * 109.47191 * 188.65332 * 3 2 1 27 27 H 1.09001 * 109.47457 * 68.65682 * 3 2 1 28 28 H 1.09002 * 109.46498 * 61.87862 * 4 3 2 29 29 H 1.09000 * 109.46736 * 301.88195 * 4 3 2 30 30 H 1.09001 * 109.47468 * 315.84793 * 6 5 4 31 31 H 1.08998 * 109.47038 * 75.85419 * 6 5 4 32 32 H 0.97001 * 120.00407 * 180.02562 * 10 9 7 33 33 H 1.08992 * 109.47354 * 186.04728 * 15 5 4 34 34 H 1.09006 * 109.47181 * 306.04867 * 15 5 4 35 35 H 0.96702 * 117.00385 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.9001 1.1265 5 7 4.5868 -0.8641 1.1550 6 6 5.0711 0.3876 1.7520 7 6 6.5299 0.5707 1.4208 8 1 7.0643 -0.2033 0.8900 9 6 7.1821 1.7261 1.7953 10 7 6.5314 2.6685 2.4421 11 14 8.9900 1.9533 1.3841 12 1 9.4868 0.7566 0.6586 13 1 9.1559 3.1557 0.5286 14 1 9.7650 2.1278 2.6388 15 6 5.1283 -2.0303 1.8654 16 6 4.8105 -3.3015 1.0753 17 1 3.9005 -3.2677 0.4763 18 6 5.1896 -4.6410 1.7101 19 1 4.5288 -5.4888 1.5288 20 6 5.8468 -4.6074 3.0658 21 8 6.0551 -3.5490 3.6101 22 8 6.1998 -5.7533 3.6691 23 6 5.9907 -4.1032 0.5227 24 9 5.8191 -4.7372 -0.7126 25 9 7.2776 -3.6176 0.7780 26 1 2.9709 1.0168 0.1546 27 1 2.9716 -0.3732 -0.9572 28 1 2.7833 -1.9229 0.9539 29 1 2.7277 -0.5458 2.0803 30 1 4.4999 1.2256 1.3526 31 1 4.9468 0.3460 2.8341 32 1 6.9902 3.4816 2.7053 33 1 6.2085 -1.9253 1.9657 34 1 4.6760 -2.0951 2.8551 35 1 6.6187 -5.6812 4.5377 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:34 Heat of formation + Delta-G solvation = -142.226979 kcal Electronic energy + Delta-G solvation = -23179.601703 eV Core-core repulsion = 19235.245834 eV Total energy + Delta-G solvation = -3944.355869 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.79141 -48.46569 -41.51701 -39.25285 -37.78790 -37.17191 -36.50771 -34.65000 -32.27683 -29.58257 -27.43219 -26.00110 -24.85492 -22.97431 -21.84804 -21.24880 -19.51165 -18.75045 -18.52208 -18.32589 -18.06569 -17.44217 -16.88121 -16.61423 -16.21804 -16.01977 -15.59959 -15.38466 -15.11410 -14.97399 -14.68666 -14.45988 -14.22869 -14.08807 -13.93548 -13.66944 -13.46071 -13.12842 -12.87987 -12.65282 -12.60262 -12.45764 -12.34781 -12.11414 -11.99623 -11.60643 -11.39852 -11.13733 -10.94147 -10.51905 -8.99642 -8.13280 -6.19345 0.72659 1.42423 1.44907 1.56842 1.74074 1.79513 1.86588 2.02447 2.11838 2.45132 2.72534 3.08111 3.20949 3.43607 3.45042 3.78444 4.11141 4.17869 4.22234 4.34101 4.45918 4.53803 4.67428 4.80853 4.96568 5.14892 5.20599 5.34544 5.37184 5.57354 5.74282 6.14610 6.32765 6.62377 6.66836 6.91269 6.95876 7.49023 8.97192 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.007125 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.318979 B = 3928.868742 C = 5836.527252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.246 3.754 3 C -0.017 4.017 4 C 0.053 3.947 5 N -0.533 5.533 6 C 0.206 3.794 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.952 3.048 12 H -0.268 1.268 13 H -0.276 1.276 14 H -0.285 1.285 15 C 0.098 3.902 16 C -0.100 4.100 17 H 0.182 0.818 18 C -0.148 4.148 19 H 0.206 0.794 20 C 0.504 3.496 21 O -0.522 6.522 22 O -0.501 6.501 23 C 0.218 3.782 24 F -0.148 7.148 25 F -0.169 7.169 26 H 0.105 0.895 27 H 0.142 0.858 28 H 0.105 0.895 29 H 0.027 0.973 30 H 0.031 0.969 31 H -0.040 1.040 32 H 0.262 0.738 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 -17.401 -2.182 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.071 4.071 3 C -0.057 4.057 4 C -0.077 4.077 5 N -0.258 5.258 6 C 0.080 3.920 7 C -0.549 4.549 8 H 0.076 0.924 9 C -0.191 4.191 10 N -0.573 5.573 11 Si 0.779 3.221 12 H -0.193 1.193 13 H -0.202 1.202 14 H -0.212 1.212 15 C -0.030 4.030 16 C -0.119 4.119 17 H 0.199 0.801 18 C -0.168 4.168 19 H 0.223 0.777 20 C 0.346 3.654 21 O -0.410 6.410 22 O -0.316 6.316 23 C 0.181 3.819 24 F -0.128 7.128 25 F -0.149 7.149 26 H 0.123 0.877 27 H 0.160 0.840 28 H 0.123 0.877 29 H 0.046 0.954 30 H 0.049 0.951 31 H -0.022 1.022 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -4.689 -17.001 -2.842 17.863 hybrid contribution 1.771 0.686 1.469 2.401 sum -2.918 -16.315 -1.372 16.630 Atomic orbital electron populations 1.81201 1.14378 1.10994 1.10914 1.29460 0.95257 0.91210 0.91175 1.19325 0.79055 1.03887 1.03412 1.22090 0.88390 1.00856 0.96347 1.61960 1.06514 1.02755 1.54537 1.19459 0.94966 0.86926 0.90664 1.21471 0.96080 1.02165 1.35194 0.92447 1.25694 1.02170 0.95895 0.95381 1.70052 1.37931 1.08265 1.41035 0.85581 0.80589 0.78198 0.77774 1.19277 1.20208 1.21151 1.21481 1.00963 0.87047 0.93524 1.24019 0.98705 0.90604 0.98536 0.80118 1.23531 1.02170 1.03659 0.87398 0.77733 1.22132 0.75121 0.81350 0.86780 1.90888 1.51269 1.32768 1.66103 1.84411 1.73210 1.34520 1.39424 1.19893 0.80411 1.00043 0.81554 1.93062 1.94973 1.82177 1.42562 1.93043 1.40087 1.88150 1.93641 0.87693 0.84008 0.87705 0.95420 0.95065 1.02221 0.92936 0.91523 0.93634 0.70440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -15.37 18.54 20.01 0.37 -15.00 16 2 C 0.25 6.37 15.43 89.44 1.38 7.75 16 3 C -0.02 -0.39 5.84 28.79 0.17 -0.22 16 4 C 0.05 1.40 4.76 86.30 0.41 1.81 16 5 N -0.53 -19.06 4.38 -900.77 -3.95 -23.00 16 6 C 0.21 9.85 4.55 85.56 0.39 10.24 16 7 C -0.51 -27.58 8.53 25.60 0.22 -27.37 16 8 H 0.06 3.13 7.42 -2.91 -0.02 3.11 16 9 C 0.01 0.36 5.46 84.65 0.46 0.82 16 10 N -0.93 -54.34 13.29 21.45 0.28 -54.05 16 11 Si 0.95 44.20 29.54 68.60 2.03 46.22 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 14 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 15 C 0.10 3.33 3.32 86.31 0.29 3.61 16 16 C -0.10 -2.29 5.53 -10.79 -0.06 -2.35 16 17 H 0.18 2.83 6.45 -2.39 -0.02 2.82 16 18 C -0.15 -2.73 6.28 -11.54 -0.07 -2.81 16 19 H 0.21 1.85 8.14 -2.38 -0.02 1.83 16 20 C 0.50 11.53 7.73 71.24 0.55 12.08 16 21 O -0.52 -16.75 13.87 21.96 0.30 -16.45 16 22 O -0.50 -7.93 13.42 -51.32 -0.69 -8.62 16 23 C 0.22 5.41 5.13 30.59 0.16 5.57 16 24 F -0.15 -3.39 17.60 44.97 0.79 -2.60 16 25 F -0.17 -5.60 16.01 44.97 0.72 -4.88 16 26 H 0.11 2.84 6.73 -2.39 -0.02 2.82 16 27 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.10 2.01 6.00 -2.39 -0.01 2.00 16 29 H 0.03 0.81 7.99 -2.39 -0.02 0.79 16 30 H 0.03 1.54 6.53 -2.39 -0.02 1.52 16 31 H -0.04 -2.15 8.05 -2.39 -0.02 -2.17 16 32 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.07 2.84 5.35 -2.39 -0.01 2.83 16 34 H 0.05 1.64 6.90 -2.38 -0.02 1.62 16 35 H 0.43 3.52 9.10 -74.06 -0.67 2.84 16 Total: -1.00 -72.75 315.67 4.24 -68.51 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 0.49 Total: 0.74 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 3.89 Total: 9.14 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -3.29 Total: -92.06 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.38 Total: -25.07 kcal Atomic # 9 Polarization: -8.99 SS G_CDS: 1.51 Total: -7.48 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -72.75 4.24 -68.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.717 kcal (2) G-P(sol) polarization free energy of solvation -72.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds