Wall clock time and date at job start Tue Mar 31 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 C 1.50703 * 109.47185 * 120.00026 * 2 1 3 5 5 H 1.08005 * 119.99525 * 119.99801 * 4 2 1 6 6 C 1.37876 * 120.00249 * 300.00088 * 4 2 1 7 7 N 1.31515 * 119.99465 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00169 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47029 * 89.99871 * 8 6 4 10 10 H 1.48499 * 109.47284 * 209.99909 * 8 6 4 11 11 H 1.48499 * 109.47291 * 330.00030 * 8 6 4 12 12 N 1.46503 * 109.47036 * 240.00136 * 2 1 3 13 13 C 1.34775 * 120.00069 * 84.99916 * 12 2 1 14 14 O 1.21594 * 119.99767 * 359.97438 * 13 12 2 15 15 N 1.34777 * 120.00065 * 179.97438 * 13 12 2 16 16 C 1.40192 * 120.00049 * 180.02562 * 15 13 12 17 17 C 1.40402 * 125.97032 * 359.97438 * 16 15 13 18 18 C 1.35245 * 107.86627 * 179.70432 * 17 16 15 19 19 N 1.34964 * 107.85965 * 0.26430 * 18 17 16 20 20 C 1.46495 * 125.98003 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.46877 * 125.00357 * 20 19 18 22 22 F 1.39896 * 109.47193 * 65.00730 * 21 20 19 23 23 F 1.39909 * 109.47199 * 185.00628 * 21 20 19 24 24 N 1.31206 * 125.97560 * 180.17721 * 16 15 13 25 25 H 1.09001 * 109.46524 * 299.99708 * 1 2 3 26 26 H 1.08993 * 109.46948 * 59.99784 * 1 2 3 27 27 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99349 * 180.02562 * 7 6 4 29 29 H 0.97005 * 119.99875 * 265.00221 * 12 2 1 30 30 H 0.97005 * 119.99878 * 0.02562 * 15 13 12 31 31 H 1.08002 * 126.07048 * 359.97438 * 17 16 15 32 32 H 1.08000 * 126.07435 * 180.26799 * 18 17 16 33 33 H 1.08994 * 109.47532 * 245.00383 * 20 19 18 34 34 H 1.08999 * 109.47116 * 5.01096 * 20 19 18 35 35 H 1.08995 * 109.47425 * 305.00221 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8574 1.1614 -2.4118 15 7 2.5968 -0.6534 -3.4575 16 6 2.7311 0.0461 -4.6650 17 6 2.4348 1.4032 -4.8693 18 6 2.7031 1.6965 -6.1620 19 7 3.1467 0.5700 -6.7585 20 6 3.5506 0.4405 -8.1607 21 6 4.9710 -0.1235 -8.2322 22 9 4.9818 -1.4262 -7.7222 23 9 5.3996 -0.1406 -9.5639 24 7 3.1523 -0.4539 -5.8026 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7096 1.1617 3.4844 29 1 2.2490 -1.6318 -1.1527 30 1 2.8275 -1.5946 -3.4139 31 1 2.0630 2.0919 -4.1250 32 1 2.5836 2.6608 -6.6333 33 1 2.8658 -0.2335 -8.6754 34 1 3.5242 1.4198 -8.6384 35 1 5.6408 0.5028 -7.6431 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161737607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:55 Heat of formation + Delta-G solvation = -43.058958 kcal Electronic energy + Delta-G solvation = -22209.484804 eV Core-core repulsion = 18301.721934 eV Total energy + Delta-G solvation = -3907.762870 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.27318 -47.25348 -41.26360 -39.30693 -35.45525 -34.48197 -33.19925 -32.24929 -30.07865 -28.98759 -27.87307 -25.26667 -23.82400 -22.34665 -21.32581 -20.28404 -19.78485 -18.18751 -17.99000 -17.70292 -17.10646 -16.85013 -15.98849 -15.64054 -15.08405 -14.92172 -14.41075 -14.26380 -14.07581 -13.63784 -13.55317 -13.34286 -13.15831 -12.91972 -12.51161 -12.39572 -11.84881 -11.59347 -11.10623 -11.03122 -10.82657 -10.62506 -10.53026 -10.29047 -10.24108 -9.39990 -9.07186 -8.78162 -8.58212 -8.26038 -7.82737 -6.14093 -4.23120 1.78405 2.00981 2.90205 3.09033 3.24612 3.31363 3.33139 3.39293 3.81923 3.93728 3.95677 4.30526 4.32713 4.68567 4.79758 4.91010 4.98612 5.18929 5.36499 5.75675 5.90223 6.41838 6.74376 6.89389 6.96652 7.00712 7.12377 7.15506 7.43124 7.57417 7.66835 7.87565 8.03866 8.14019 8.70305 8.81733 9.18881 9.44919 10.92025 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.038947 B = 0.002882 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.759045 B = 9712.214334 C =10164.564276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.281 3.719 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.715 5.715 13 C 0.702 3.298 14 O -0.576 6.576 15 N -0.656 5.656 16 C 0.336 3.664 17 C -0.251 4.251 18 C 0.056 3.944 19 N -0.389 5.389 20 C 0.099 3.901 21 C 0.255 3.745 22 F -0.186 7.186 23 F -0.202 7.202 24 N -0.326 5.326 25 H 0.091 0.909 26 H 0.016 0.984 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.388 0.612 30 H 0.408 0.592 31 H 0.179 0.821 32 H 0.177 0.823 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 -0.125 -20.293 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.180 3.820 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.366 5.366 13 C 0.401 3.599 14 O -0.452 6.452 15 N -0.308 5.308 16 C 0.078 3.922 17 C -0.282 4.282 18 C -0.087 4.087 19 N -0.174 5.174 20 C -0.025 4.025 21 C 0.200 3.800 22 F -0.167 7.167 23 F -0.183 7.183 24 N -0.156 5.156 25 H 0.110 0.890 26 H 0.035 0.965 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.220 0.780 30 H 0.243 0.757 31 H 0.196 0.804 32 H 0.194 0.806 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.195 0.043 -20.781 21.420 hybrid contribution 0.269 -0.806 1.139 1.421 sum 5.464 -0.762 -19.642 20.402 Atomic orbital electron populations 1.22115 0.98439 0.99205 1.01017 1.18721 0.90906 0.93785 0.78629 0.93101 1.21211 1.32544 1.13343 0.90207 0.91996 1.24873 0.94778 0.94983 0.99033 1.69904 1.35770 1.22416 1.23944 0.86424 0.78588 0.79833 0.82102 1.20552 1.21068 1.19842 1.45859 1.68438 1.13467 1.08872 1.15965 0.78624 0.85302 0.79967 1.90793 1.56553 1.14131 1.83734 1.42005 1.69118 1.13571 1.06073 1.19005 0.95862 0.91437 0.85936 1.22072 1.13201 0.96114 0.96780 1.22614 1.00238 0.92053 0.93791 1.47668 1.54875 1.07091 1.07800 1.22489 0.94959 1.05300 0.79718 1.22069 0.97180 0.82748 0.77980 1.93073 1.97440 1.39552 1.86680 1.93008 1.91081 1.96846 1.37379 1.77508 1.30916 1.10453 0.96696 0.89035 0.96475 0.95447 0.92527 0.77959 0.75721 0.80364 0.80578 0.87820 0.85664 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 2 C 0.28 7.01 2.56 -69.08 -0.18 6.83 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -13.92 8.73 -34.44 -0.30 -14.22 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.49 11.32 55.43 0.63 -23.86 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.71 -14.62 5.07 -59.81 -0.30 -14.92 16 13 C 0.70 14.11 8.50 -86.92 -0.74 13.37 16 14 O -0.58 -13.33 13.13 5.28 0.07 -13.26 16 15 N -0.66 -10.78 5.45 -15.51 -0.08 -10.87 16 16 C 0.34 5.52 8.11 -154.37 -1.25 4.27 16 17 C -0.25 -3.91 9.61 -39.83 -0.38 -4.29 16 18 C 0.06 0.62 11.44 -17.24 -0.20 0.42 16 19 N -0.39 -4.41 3.68 -61.39 -0.23 -4.64 16 20 C 0.10 0.70 6.72 -4.04 -0.03 0.67 16 21 C 0.26 2.06 5.51 37.16 0.20 2.27 16 22 F -0.19 -2.22 16.57 2.25 0.04 -2.18 16 23 F -0.20 -1.68 17.34 2.25 0.04 -1.64 16 24 N -0.33 -4.88 11.75 31.44 0.37 -4.51 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 6.79 8.55 -40.82 -0.35 6.44 16 30 H 0.41 5.53 8.84 -40.82 -0.36 5.17 16 31 H 0.18 3.16 5.91 -52.49 -0.31 2.85 16 32 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.13 0.39 8.07 -51.93 -0.42 -0.03 16 35 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -32.59 312.59 -6.20 -38.79 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -3.80 Total: 9.29 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -2.62 Total: 7.70 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.38 Total: -58.79 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.07 Total: -13.26 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.08 Total: -3.82 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.59 -6.20 -38.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161737607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.270 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds